Wall clock time and date at job start Tue Mar 31 2020 20:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.86934 * 2 1 4 4 C 1.54324 * 109.88442 * 121.02052 * 2 1 3 5 5 C 1.55151 * 102.94073 * 141.61113 * 4 2 1 6 6 H 1.09000 * 111.00244 * 82.57334 * 5 4 2 7 7 N 1.46498 * 111.00005 * 206.38391 * 5 4 2 8 8 C 1.36944 * 119.99654 * 205.00070 * 7 5 4 9 9 H 1.07993 * 120.00323 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99793 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00081 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00007 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47245 * 60.00217 * 12 10 8 14 14 H 1.48505 * 109.47009 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46931 * 299.99950 * 12 10 8 16 16 C 1.54905 * 101.58488 * 324.49594 * 5 4 2 17 17 N 1.47028 * 109.88230 * 238.98982 * 2 1 3 18 18 C 1.34775 * 125.64515 * 61.60466 * 17 2 1 19 19 O 1.21276 * 120.00641 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99394 * 179.97438 * 18 17 2 21 21 C 1.50697 * 109.46886 * 180.02562 * 20 18 17 22 22 O 1.21285 * 120.00207 * 0.02562 * 21 20 18 23 23 N 1.34779 * 120.00238 * 179.97438 * 21 20 18 24 24 C 1.46500 * 120.00439 * 179.97438 * 23 21 20 25 25 C 1.52992 * 109.47258 * 180.02562 * 24 23 21 26 26 F 1.39900 * 109.47512 * 60.00116 * 25 24 23 27 27 F 1.39902 * 109.47145 * 180.02562 * 25 24 23 28 28 F 1.39906 * 109.47048 * 299.99778 * 25 24 23 29 29 H 1.08998 * 109.47007 * 299.29401 * 1 2 3 30 30 H 1.08996 * 109.47351 * 59.29842 * 1 2 3 31 31 H 1.08999 * 109.46680 * 179.29541 * 1 2 3 32 32 H 1.08997 * 110.71657 * 259.97367 * 4 2 1 33 33 H 1.09002 * 110.71774 * 23.06665 * 4 2 1 34 34 H 0.96992 * 120.00573 * 25.00719 * 7 5 4 35 35 H 0.97000 * 120.00248 * 179.97438 * 11 10 8 36 36 H 1.09001 * 110.36617 * 155.84513 * 16 5 4 37 37 H 1.09002 * 110.36944 * 278.06458 * 16 5 4 38 38 H 1.08994 * 109.47096 * 300.00146 * 20 18 17 39 39 H 1.09003 * 109.46962 * 60.00648 * 20 18 17 40 40 H 0.96997 * 119.99295 * 0.02562 * 23 21 20 41 41 H 1.09004 * 109.46773 * 300.00314 * 24 23 21 42 42 H 1.08999 * 109.46889 * 60.00050 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2437 5 6 3.2877 -1.5132 0.6943 6 1 4.1654 -0.8678 0.6615 7 7 3.5538 -2.7170 1.4857 8 6 4.8173 -3.2435 1.5274 9 1 5.6176 -2.7711 0.9773 10 6 5.0694 -4.3844 2.2769 11 7 4.0939 -4.9604 2.9470 12 14 6.7930 -5.1022 2.3344 13 1 7.7309 -4.0938 2.8897 14 1 6.7973 -6.3109 3.1971 15 1 7.2208 -5.4730 0.9615 16 6 2.8146 -1.8804 -0.7343 17 7 2.0301 -0.7123 -1.1850 18 6 1.8074 -0.3583 -2.4663 19 8 1.1436 0.6251 -2.7172 20 6 2.3843 -1.1841 -3.5872 21 6 1.9921 -0.5787 -4.9103 22 8 1.3116 0.4248 -4.9402 23 7 2.3984 -1.1518 -6.0605 24 6 2.0167 -0.5636 -7.3468 25 6 2.6024 -1.4018 -8.4848 26 9 2.1079 -2.7080 -8.4043 27 9 2.2384 -0.8398 -9.7132 28 9 3.9972 -1.4238 -8.3777 29 1 -0.3633 0.5028 0.8962 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3632 -1.0276 -0.0126 32 1 2.3530 -0.0433 2.0200 33 1 1.3040 -1.4415 1.6220 34 1 2.8351 -3.1411 1.9801 35 1 4.2699 -5.7579 3.4704 36 1 3.6717 -2.0355 -1.3896 37 1 2.1903 -2.7735 -0.7095 38 1 3.4709 -1.2013 -3.5037 39 1 1.9988 -2.2018 -3.5244 40 1 2.9430 -1.9541 -6.0366 41 1 0.9300 -0.5469 -7.4304 42 1 2.4017 0.4542 -7.4094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571488155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:59 Heat of formation + Delta-G solvation = -207.183080 kcal Electronic energy + Delta-G solvation = -29224.696221 eV Core-core repulsion = 24404.257041 eV Total energy + Delta-G solvation = -4820.439180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.64223 -48.15543 -48.11691 -40.51569 -39.34313 -37.25117 -35.30634 -34.22319 -32.36358 -31.44184 -30.76807 -28.86529 -28.37134 -25.45943 -24.09966 -23.78928 -22.22984 -21.02252 -20.32249 -19.11184 -18.99601 -18.88534 -18.22149 -17.54645 -17.21598 -16.35750 -16.05978 -15.98981 -15.61985 -15.11882 -14.97741 -14.78227 -14.57823 -14.54037 -14.27307 -14.25687 -14.09387 -13.72763 -13.65159 -13.48450 -13.22296 -12.93604 -12.67939 -12.44994 -12.40023 -12.21286 -11.91807 -11.66389 -11.19445 -11.05862 -10.82806 -10.66592 -10.37923 -10.29282 -10.08081 -9.82681 -9.71258 -9.39420 -9.07261 -8.35319 -7.16438 -5.91717 -3.23071 1.98445 2.33751 2.40170 2.82389 3.16964 3.21878 3.34847 3.40338 3.41124 3.48903 3.73336 4.28291 4.43768 4.59274 4.63836 4.83904 5.00732 5.04021 5.10668 5.16913 5.25450 5.46517 5.54753 5.65020 5.68972 5.76523 5.81187 6.04639 6.09131 6.14641 6.33288 6.43472 6.44226 6.64028 6.78409 6.89347 7.55891 7.77339 7.84877 8.25544 8.40211 9.37639 9.91166 10.25885 11.30034 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.002562 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.248510 B =10926.793952 C =12980.536399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.251 4.251 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.071 3.929 17 N -0.612 5.612 18 C 0.528 3.472 19 O -0.509 6.509 20 C -0.160 4.160 21 C 0.523 3.477 22 O -0.484 6.484 23 N -0.738 5.738 24 C 0.081 3.919 25 C 0.448 3.552 26 F -0.178 7.178 27 F -0.174 7.174 28 F -0.178 7.178 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.258 0.742 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.407 0.593 41 H 0.114 0.886 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 6.699 -19.051 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.382 4.382 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.055 4.055 17 N -0.348 5.348 18 C 0.314 3.686 19 O -0.384 6.384 20 C -0.203 4.203 21 C 0.308 3.692 22 O -0.354 6.354 23 N -0.396 5.396 24 C -0.045 4.045 25 C 0.394 3.606 26 F -0.159 7.159 27 F -0.155 7.155 28 F -0.159 7.159 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.243 0.757 41 H 0.132 0.868 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.897 7.934 -19.271 21.408 hybrid contribution 1.193 -1.436 -0.083 1.869 sum -3.704 6.498 -19.354 20.749 Atomic orbital electron populations 1.22132 0.95219 1.02129 1.02426 1.21480 0.94190 0.96063 0.84524 0.91082 1.23048 0.99153 0.99693 0.95768 1.21272 0.94728 0.89465 0.88521 0.91401 1.42320 1.09612 1.27927 1.55247 1.19203 0.86835 1.07019 1.25169 0.90982 1.24777 0.97649 0.98302 0.99678 1.69646 1.30935 1.22344 1.34683 0.86259 0.83904 0.78455 0.77470 1.21127 1.21634 1.21121 1.23577 0.94386 0.87639 0.99929 1.48681 1.52613 1.29177 1.04314 1.19401 0.81494 0.85531 0.82185 1.90813 1.38540 1.26462 1.82571 1.21551 1.04951 1.02222 0.91540 1.20123 0.80087 0.84460 0.84509 1.90888 1.34971 1.23072 1.86442 1.45730 1.57423 1.32263 1.04219 1.22394 1.03313 0.97819 0.80964 1.20566 0.76577 0.79338 0.84138 1.93238 1.87363 1.39049 1.96262 1.93230 1.91458 1.84873 1.45988 1.93239 1.30173 1.96458 1.96044 0.91956 0.91576 0.92609 0.90351 0.90402 0.77826 0.93217 0.91342 0.91189 0.85702 0.85747 0.75696 0.86784 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.10 37.16 0.34 -1.85 16 2 C 0.14 2.02 3.45 -66.95 -0.23 1.79 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.05 6.12 -24.90 -0.15 -2.20 16 5 C 0.17 3.01 3.71 -65.79 -0.24 2.76 16 6 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 7 N -0.71 -15.93 5.25 -51.36 -0.27 -16.19 16 8 C -0.25 -6.34 9.96 -15.06 -0.15 -6.49 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16 12 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.06 6.41 -2.35 -0.02 1.04 16 17 N -0.61 -8.89 3.08 -162.75 -0.50 -9.39 16 18 C 0.53 7.85 7.64 -10.98 -0.08 7.76 16 19 O -0.51 -9.49 13.22 -18.96 -0.25 -9.74 16 20 C -0.16 -1.65 5.20 -29.03 -0.15 -1.80 16 21 C 0.52 5.93 7.82 -10.99 -0.09 5.85 16 22 O -0.48 -7.75 14.18 -18.96 -0.27 -8.02 16 23 N -0.74 -5.66 5.42 -60.30 -0.33 -5.99 16 24 C 0.08 0.54 5.64 -4.05 -0.02 0.52 16 25 C 0.45 2.99 3.11 37.15 0.12 3.11 16 26 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 27 F -0.17 -1.28 17.32 2.25 0.04 -1.24 16 28 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.01 6.89 -51.93 -0.36 0.65 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.19 7.72 -51.93 -0.40 0.78 16 34 H 0.39 9.32 7.77 -40.82 -0.32 9.00 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.13 1.00 7.86 -51.93 -0.41 0.59 16 39 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.41 2.21 8.36 -40.82 -0.34 1.87 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -32.80 365.87 -6.63 -39.42 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.56 Total: 7.67 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.78 Total: 10.20 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.37 Total: -57.11 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.52 Total: -17.76 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.12 Total: -3.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.80 -6.63 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.761 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds