Wall clock time and date at job start Tue Mar 31 2020 20:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.86934 * 2 1 4 4 C 1.54324 * 109.88442 * 121.02052 * 2 1 3 5 5 C 1.55151 * 102.94073 * 141.61113 * 4 2 1 6 6 H 1.09000 * 111.00244 * 82.57334 * 5 4 2 7 7 N 1.46498 * 111.00005 * 206.38391 * 5 4 2 8 8 C 1.36944 * 119.99654 * 205.00070 * 7 5 4 9 9 H 1.07993 * 120.00323 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99793 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00081 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00007 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47245 * 60.00217 * 12 10 8 14 14 H 1.48505 * 109.47009 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46931 * 299.99950 * 12 10 8 16 16 C 1.54905 * 101.58488 * 324.49594 * 5 4 2 17 17 N 1.47028 * 109.88230 * 238.98982 * 2 1 3 18 18 C 1.34775 * 125.64515 * 61.60466 * 17 2 1 19 19 O 1.21276 * 120.00641 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99394 * 179.97438 * 18 17 2 21 21 C 1.50697 * 109.46886 * 180.02562 * 20 18 17 22 22 O 1.21285 * 120.00207 * 0.02562 * 21 20 18 23 23 N 1.34779 * 120.00238 * 179.97438 * 21 20 18 24 24 C 1.46500 * 120.00439 * 179.97438 * 23 21 20 25 25 C 1.52992 * 109.47258 * 180.02562 * 24 23 21 26 26 F 1.39900 * 109.47512 * 60.00116 * 25 24 23 27 27 F 1.39902 * 109.47145 * 180.02562 * 25 24 23 28 28 F 1.39906 * 109.47048 * 299.99778 * 25 24 23 29 29 H 1.08998 * 109.47007 * 299.29401 * 1 2 3 30 30 H 1.08996 * 109.47351 * 59.29842 * 1 2 3 31 31 H 1.08999 * 109.46680 * 179.29541 * 1 2 3 32 32 H 1.08997 * 110.71657 * 259.97367 * 4 2 1 33 33 H 1.09002 * 110.71774 * 23.06665 * 4 2 1 34 34 H 0.96992 * 120.00573 * 25.00719 * 7 5 4 35 35 H 0.97000 * 120.00248 * 179.97438 * 11 10 8 36 36 H 1.09001 * 110.36617 * 155.84513 * 16 5 4 37 37 H 1.09002 * 110.36944 * 278.06458 * 16 5 4 38 38 H 1.08994 * 109.47096 * 300.00146 * 20 18 17 39 39 H 1.09003 * 109.46962 * 60.00648 * 20 18 17 40 40 H 0.96997 * 119.99295 * 0.02562 * 23 21 20 41 41 H 1.09004 * 109.46773 * 300.00314 * 24 23 21 42 42 H 1.08999 * 109.46889 * 60.00050 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2437 5 6 3.2877 -1.5132 0.6943 6 1 4.1654 -0.8678 0.6615 7 7 3.5538 -2.7170 1.4857 8 6 4.8173 -3.2435 1.5274 9 1 5.6176 -2.7711 0.9773 10 6 5.0694 -4.3844 2.2769 11 7 4.0939 -4.9604 2.9470 12 14 6.7930 -5.1022 2.3344 13 1 7.7309 -4.0938 2.8897 14 1 6.7973 -6.3109 3.1971 15 1 7.2208 -5.4730 0.9615 16 6 2.8146 -1.8804 -0.7343 17 7 2.0301 -0.7123 -1.1850 18 6 1.8074 -0.3583 -2.4663 19 8 1.1436 0.6251 -2.7172 20 6 2.3843 -1.1841 -3.5872 21 6 1.9921 -0.5787 -4.9103 22 8 1.3116 0.4248 -4.9402 23 7 2.3984 -1.1518 -6.0605 24 6 2.0167 -0.5636 -7.3468 25 6 2.6024 -1.4018 -8.4848 26 9 2.1079 -2.7080 -8.4043 27 9 2.2384 -0.8398 -9.7132 28 9 3.9972 -1.4238 -8.3777 29 1 -0.3633 0.5028 0.8962 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3632 -1.0276 -0.0126 32 1 2.3530 -0.0433 2.0200 33 1 1.3040 -1.4415 1.6220 34 1 2.8351 -3.1411 1.9801 35 1 4.2699 -5.7579 3.4704 36 1 3.6717 -2.0355 -1.3896 37 1 2.1903 -2.7735 -0.7095 38 1 3.4709 -1.2013 -3.5037 39 1 1.9988 -2.2018 -3.5244 40 1 2.9430 -1.9541 -6.0366 41 1 0.9300 -0.5469 -7.4304 42 1 2.4017 0.4542 -7.4094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571488155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:58 Heat of formation + Delta-G solvation = -229.035073 kcal Electronic energy + Delta-G solvation = -29225.643794 eV Core-core repulsion = 24404.257041 eV Total energy + Delta-G solvation = -4821.386753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.21568 -48.73132 -48.69317 -41.55520 -40.40135 -38.50676 -36.14749 -35.86950 -33.48492 -33.11886 -31.67552 -30.03837 -29.51558 -26.66495 -25.75913 -24.58195 -23.30696 -22.00518 -21.62800 -20.01637 -19.67886 -19.50709 -19.20337 -19.03274 -18.34184 -17.44549 -16.99574 -16.91036 -16.69228 -16.28743 -15.89023 -15.60808 -15.48784 -15.29309 -15.26029 -15.11990 -14.89719 -14.83821 -14.81540 -14.44303 -14.32248 -14.15896 -14.07637 -13.62340 -13.39701 -13.07463 -12.99648 -12.87306 -12.78722 -12.73096 -12.33502 -12.11087 -11.98013 -11.69366 -11.45699 -11.28004 -10.92021 -10.52095 -10.44378 -9.58815 -9.00152 -7.90287 -5.19830 1.32815 1.49094 1.54735 1.55922 1.61780 1.70067 1.71802 2.18921 2.61166 2.62357 2.93785 3.14467 3.33909 3.41861 3.60540 3.88457 3.95072 4.02527 4.09725 4.20443 4.29047 4.30064 4.36418 4.41476 4.51772 4.55842 4.76961 4.84271 4.92003 5.01089 5.11931 5.18627 5.26775 5.43199 5.47336 5.59985 6.22177 6.30579 6.61024 7.04289 7.27922 7.38683 8.10822 8.34321 9.32387 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.002562 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.248510 B =10926.793952 C =12980.536399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.164 3.836 6 H 0.067 0.933 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.082 0.918 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.968 3.032 13 H -0.281 1.281 14 H -0.302 1.302 15 H -0.274 1.274 16 C 0.085 3.915 17 N -0.610 5.610 18 C 0.522 3.478 19 O -0.550 6.550 20 C -0.155 4.155 21 C 0.526 3.474 22 O -0.537 6.537 23 N -0.722 5.722 24 C 0.080 3.920 25 C 0.458 3.542 26 F -0.181 7.181 27 F -0.177 7.177 28 F -0.181 7.181 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.421 0.579 41 H 0.119 0.881 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 6.568 -20.300 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.085 0.915 7 N -0.362 5.362 8 C -0.372 4.372 9 H 0.100 0.900 10 C -0.263 4.263 11 N -0.618 5.618 12 Si 0.797 3.203 13 H -0.207 1.207 14 H -0.229 1.229 15 H -0.200 1.200 16 C -0.040 4.040 17 N -0.346 5.346 18 C 0.310 3.690 19 O -0.427 6.427 20 C -0.197 4.197 21 C 0.312 3.688 22 O -0.411 6.411 23 N -0.380 5.380 24 C -0.045 4.045 25 C 0.404 3.596 26 F -0.162 7.162 27 F -0.158 7.158 28 F -0.162 7.162 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.259 0.741 41 H 0.137 0.863 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.843 7.805 -20.582 22.345 hybrid contribution 0.850 -1.308 0.248 1.579 sum -2.994 6.498 -20.334 21.556 Atomic orbital electron populations 1.22044 0.94623 1.01939 1.02441 1.21493 0.94660 0.95950 0.84319 0.91148 1.22938 0.97902 0.99468 0.96207 1.21446 0.95783 0.87939 0.89471 0.91497 1.42437 1.08468 1.29186 1.56077 1.19606 0.88050 1.06182 1.23366 0.89968 1.25493 1.00746 0.99468 1.00558 1.69795 1.32693 1.22886 1.36409 0.85302 0.80255 0.77190 0.77521 1.20739 1.22902 1.20000 1.23253 0.94939 0.87340 0.98489 1.48712 1.52418 1.28860 1.04560 1.20133 0.80768 0.85332 0.82778 1.90807 1.40371 1.28439 1.83084 1.21614 1.06528 1.02368 0.89146 1.20263 0.79306 0.83753 0.85502 1.90879 1.37597 1.25489 1.87176 1.45531 1.56497 1.32192 1.03741 1.22459 1.03695 0.98002 0.80371 1.20424 0.76275 0.79021 0.83890 1.93236 1.87394 1.39319 1.96263 1.93227 1.91479 1.84924 1.46191 1.93237 1.30467 1.96455 1.96044 0.90172 0.93355 0.92787 0.89480 0.90715 0.79106 0.94105 0.89362 0.91724 0.82700 0.82946 0.74104 0.86345 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.10 71.98 0.66 -3.35 16 2 C 0.14 3.82 3.45 45.34 0.16 3.97 16 3 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.13 -3.59 6.12 31.78 0.19 -3.40 16 5 C 0.16 5.44 3.71 46.38 0.17 5.61 16 6 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 7 N -0.72 -31.66 5.25 -316.39 -1.66 -33.32 16 8 C -0.24 -11.81 9.96 84.03 0.84 -10.98 16 9 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 10 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 11 N -0.97 -55.18 13.06 21.65 0.28 -54.90 16 12 Si 0.97 42.57 29.55 68.60 2.03 44.60 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 14 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 C 0.09 2.36 6.41 86.79 0.56 2.91 16 17 N -0.61 -16.63 3.08 -787.22 -2.42 -19.05 16 18 C 0.52 14.71 7.64 87.66 0.67 15.38 16 19 O -0.55 -20.36 13.22 20.43 0.27 -20.09 16 20 C -0.15 -2.76 5.20 29.10 0.15 -2.61 16 21 C 0.53 11.00 7.82 87.66 0.69 11.68 16 22 O -0.54 -17.02 14.18 20.40 0.29 -16.73 16 23 N -0.72 -9.44 5.42 -463.07 -2.51 -11.95 16 24 C 0.08 0.95 5.64 86.38 0.49 1.44 16 25 C 0.46 5.30 3.11 71.98 0.22 5.53 16 26 F -0.18 -2.35 17.18 44.97 0.77 -1.58 16 27 F -0.18 -2.34 17.32 44.97 0.78 -1.56 16 28 F -0.18 -2.34 17.18 44.97 0.77 -1.57 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.46 6.89 -2.39 -0.02 1.44 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.20 7.72 -2.39 -0.02 2.18 16 34 H 0.38 18.07 7.77 -92.71 -0.72 17.35 16 35 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.09 2.11 7.50 -2.39 -0.02 2.09 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.16 1.85 7.86 -2.39 -0.02 1.83 16 39 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.42 3.31 8.36 -92.71 -0.78 2.53 16 41 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -71.17 365.87 3.45 -67.72 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -0.41 Total: 25.47 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 5.26 Total: 22.97 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -6.31 Total: -119.22 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: 0.56 Total: -36.82 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 2.32 Total: -4.71 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -71.17 3.45 -67.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.312 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds