Wall clock time and date at job start Tue Mar 31 2020 20:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.87405 * 2 1 4 4 C 1.54323 * 109.88201 * 121.18078 * 2 1 3 5 5 C 1.55163 * 102.94041 * 141.61126 * 4 2 1 6 6 H 1.09006 * 110.99934 * 206.38284 * 5 4 2 7 7 N 1.46494 * 111.00700 * 82.57150 * 5 4 2 8 8 C 1.36940 * 120.00394 * 154.99959 * 7 5 4 9 9 H 1.07999 * 119.99438 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99982 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99472 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00086 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47025 * 90.00710 * 12 10 8 14 14 H 1.48500 * 109.46962 * 210.00279 * 12 10 8 15 15 H 1.48494 * 109.47393 * 330.00217 * 12 10 8 16 16 C 1.55127 * 101.48383 * 324.32614 * 5 4 2 17 17 N 1.47026 * 109.88248 * 238.98606 * 2 1 3 18 18 C 1.34773 * 125.64547 * 61.60192 * 17 2 1 19 19 O 1.21283 * 120.00360 * 359.72907 * 18 17 2 20 20 C 1.50706 * 120.00081 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47259 * 179.72770 * 20 18 17 22 22 O 1.21281 * 119.99992 * 359.97438 * 21 20 18 23 23 N 1.34778 * 119.99830 * 179.97438 * 21 20 18 24 24 C 1.46506 * 119.99945 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.46955 * 180.02562 * 24 23 21 26 26 F 1.39898 * 109.47086 * 60.00091 * 25 24 23 27 27 F 1.39896 * 109.46875 * 179.97438 * 25 24 23 28 28 F 1.39902 * 109.47248 * 300.00174 * 25 24 23 29 29 H 1.09004 * 109.46973 * 179.56057 * 1 2 3 30 30 H 1.09006 * 109.47030 * 299.55347 * 1 2 3 31 31 H 1.08992 * 109.47514 * 59.55867 * 1 2 3 32 32 H 1.09000 * 110.71642 * 259.96669 * 4 2 1 33 33 H 1.08993 * 110.72174 * 23.24596 * 4 2 1 34 34 H 0.97008 * 119.99899 * 334.99815 * 7 5 4 35 35 H 0.97005 * 119.99604 * 179.97438 * 11 10 8 36 36 H 1.08994 * 110.49854 * 278.45638 * 16 5 4 37 37 H 1.09008 * 110.33833 * 156.05946 * 16 5 4 38 38 H 1.09001 * 109.46564 * 299.73030 * 20 18 17 39 39 H 1.08998 * 109.47012 * 59.72084 * 20 18 17 40 40 H 0.96998 * 120.00160 * 0.02562 * 23 21 20 41 41 H 1.09000 * 109.46973 * 300.00268 * 24 23 21 42 42 H 1.09002 * 109.46843 * 60.00387 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7514 1.2416 5 6 3.2877 -1.5153 0.6901 6 1 3.4856 -2.4126 1.2765 7 7 4.4674 -0.6478 0.6483 8 6 5.7218 -1.1950 0.6968 9 1 5.8413 -2.2662 0.7662 10 6 6.8396 -0.3730 0.6577 11 7 8.0452 -0.8990 0.7048 12 14 6.6329 1.4797 0.5384 13 1 6.5622 2.0588 1.9040 14 1 7.7910 2.0613 -0.1866 15 1 5.3812 1.7917 -0.1971 16 6 2.8099 -1.8815 -0.7396 17 7 2.0300 -0.7124 -1.1850 18 6 1.8073 -0.3585 -2.4662 19 8 1.1390 0.6219 -2.7172 20 6 2.3832 -1.1849 -3.5872 21 6 1.9850 -0.5836 -4.9104 22 8 1.3006 0.4171 -4.9403 23 7 2.3895 -1.1580 -6.0606 24 6 2.0019 -0.5738 -7.3470 25 6 2.5867 -1.4128 -8.4850 26 9 2.0964 -2.7202 -8.3999 27 9 2.2161 -0.8552 -9.7133 28 9 3.9818 -1.4303 -8.3821 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3633 0.5069 0.8940 31 1 -0.3634 0.5206 -0.8859 32 1 2.3530 -0.0489 2.0199 33 1 1.3052 -1.4483 1.6161 34 1 4.3601 0.3143 0.5863 35 1 8.8264 -0.3246 0.6772 36 1 2.1801 -2.7708 -0.7155 37 1 3.6655 -2.0392 -1.3963 38 1 3.4701 -1.1990 -3.5068 39 1 2.0009 -2.2035 -3.5211 40 1 2.9366 -1.9587 -6.0367 41 1 0.9150 -0.5605 -7.4273 42 1 2.3837 0.4451 -7.4130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571488156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:02 Heat of formation + Delta-G solvation = -202.876456 kcal Electronic energy + Delta-G solvation = -29789.570384 eV Core-core repulsion = 24969.317953 eV Total energy + Delta-G solvation = -4820.252431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.59073 -48.10576 -48.06221 -40.47552 -39.36694 -37.30041 -35.24157 -34.12873 -32.34661 -31.54048 -30.74033 -29.04929 -28.70084 -25.59040 -23.95775 -23.52357 -22.40686 -21.09464 -20.14284 -19.05833 -18.96186 -18.83324 -18.17333 -17.79625 -17.30696 -16.35167 -16.03424 -15.94634 -15.63892 -15.09381 -14.89589 -14.64991 -14.50279 -14.49049 -14.21793 -14.20852 -14.07276 -14.00182 -13.71644 -13.46312 -13.16651 -12.87045 -12.73317 -12.36626 -12.34691 -12.19317 -11.98272 -11.80411 -11.42719 -11.15097 -10.90564 -10.70638 -10.40120 -10.22515 -10.12583 -9.70355 -9.64387 -9.33787 -9.10867 -8.33568 -7.40908 -5.89738 -3.26867 2.04275 2.41081 2.46635 2.89492 3.22348 3.28166 3.31317 3.36187 3.40453 3.54477 3.79014 4.35410 4.49159 4.59614 4.69736 4.88557 4.96393 5.03165 5.05813 5.17008 5.25194 5.26958 5.46662 5.55596 5.66266 5.75692 5.76456 5.88431 5.98128 6.05510 6.27303 6.29880 6.43490 6.51567 6.68285 6.96250 7.81104 7.84809 7.92069 8.29273 8.46543 9.06536 9.79484 9.97989 11.27733 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.003080 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.864655 B = 9087.895520 C =10550.838149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.070 0.930 4 C -0.142 4.142 5 C 0.175 3.825 6 H 0.083 0.917 7 N -0.736 5.736 8 C -0.253 4.253 9 H 0.093 0.907 10 C 0.012 3.988 11 N -0.929 5.929 12 Si 0.879 3.121 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.066 3.934 17 N -0.605 5.605 18 C 0.530 3.470 19 O -0.510 6.510 20 C -0.160 4.160 21 C 0.524 3.476 22 O -0.484 6.484 23 N -0.738 5.738 24 C 0.081 3.919 25 C 0.449 3.551 26 F -0.179 7.179 27 F -0.174 7.174 28 F -0.176 7.176 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.407 0.593 41 H 0.114 0.886 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -4.789 -13.200 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.181 4.181 5 C 0.063 3.937 6 H 0.101 0.899 7 N -0.377 5.377 8 C -0.382 4.382 9 H 0.111 0.889 10 C -0.185 4.185 11 N -0.575 5.575 12 Si 0.709 3.291 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.060 4.060 17 N -0.340 5.340 18 C 0.316 3.684 19 O -0.384 6.384 20 C -0.202 4.202 21 C 0.309 3.691 22 O -0.354 6.354 23 N -0.396 5.396 24 C -0.045 4.045 25 C 0.394 3.606 26 F -0.160 7.160 27 F -0.156 7.156 28 F -0.158 7.158 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.196 0.804 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.243 0.757 41 H 0.132 0.868 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.844 -3.624 -13.425 20.340 hybrid contribution 0.584 0.662 -0.445 0.988 sum -14.260 -2.962 -13.870 20.112 Atomic orbital electron populations 1.22130 0.95250 1.01842 1.02541 1.21469 0.93830 0.96467 0.84705 0.91207 1.23125 0.98444 1.00162 0.96364 1.21314 0.86102 0.94403 0.91897 0.89901 1.42709 1.01833 1.04319 1.88873 1.19055 0.81223 0.94104 1.43828 0.88902 1.24652 0.95097 0.97288 1.01470 1.69693 0.96948 1.34291 1.56596 0.86636 0.77152 0.87274 0.77995 1.20897 1.21639 1.20268 1.23437 0.94591 0.87038 1.00913 1.48445 1.52468 1.28771 1.04302 1.19375 0.81346 0.85509 0.82162 1.90811 1.38467 1.26556 1.82564 1.21547 1.05331 1.01864 0.91501 1.20120 0.80095 0.84411 0.84518 1.90884 1.34965 1.23106 1.86443 1.45720 1.57238 1.32463 1.04189 1.22392 1.03165 0.97942 0.80993 1.20562 0.76638 0.79286 0.84122 1.93228 1.87534 1.39007 1.96239 1.93226 1.91288 1.85061 1.45997 1.93248 1.30030 1.96442 1.96069 0.92763 0.92055 0.91490 0.89872 0.90293 0.80377 0.92894 0.92142 0.89980 0.85346 0.85966 0.75706 0.86834 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.10 37.16 0.34 -1.73 16 2 C 0.14 2.05 3.45 -66.95 -0.23 1.82 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.14 -1.92 6.07 -24.89 -0.15 -2.07 16 5 C 0.17 2.82 3.72 -65.66 -0.24 2.58 16 6 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.74 -15.67 5.05 -51.24 -0.26 -15.93 16 8 C -0.25 -6.49 10.44 -15.06 -0.16 -6.65 16 9 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 10 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 11 N -0.93 -27.72 13.97 55.49 0.78 -26.95 16 12 Si 0.88 21.49 27.73 -169.99 -4.71 16.78 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 16 C 0.07 0.92 6.41 -2.41 -0.02 0.91 16 17 N -0.60 -9.16 3.06 -162.88 -0.50 -9.66 16 18 C 0.53 8.52 7.64 -10.98 -0.08 8.43 16 19 O -0.51 -10.16 13.21 -18.96 -0.25 -10.41 16 20 C -0.16 -1.84 5.18 -29.03 -0.15 -1.99 16 21 C 0.52 6.57 7.82 -10.99 -0.09 6.48 16 22 O -0.48 -8.34 14.18 -18.96 -0.27 -8.61 16 23 N -0.74 -6.44 5.42 -60.29 -0.33 -6.76 16 24 C 0.08 0.62 5.64 -4.04 -0.02 0.60 16 25 C 0.45 3.35 3.11 37.16 0.12 3.47 16 26 F -0.18 -1.41 17.18 2.25 0.04 -1.37 16 27 F -0.17 -1.40 17.32 2.25 0.04 -1.37 16 28 F -0.18 -1.52 17.18 2.25 0.04 -1.48 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.02 6.87 -51.93 -0.36 0.66 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 34 H 0.36 8.01 5.73 -40.82 -0.23 7.78 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.21 7.49 -51.92 -0.39 0.82 16 38 H 0.13 1.35 7.86 -51.93 -0.41 0.94 16 39 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.41 2.61 8.36 -40.82 -0.34 2.27 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -34.77 362.86 -6.27 -41.05 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.53 Total: 7.17 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -0.78 Total: 12.07 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.31 Total: -59.30 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.52 Total: -19.02 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.12 Total: -4.22 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.77 -6.27 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.830 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds