Wall clock time and date at job start Tue Mar 31 2020 20:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.87405 * 2 1 4 4 C 1.54323 * 109.88201 * 121.18078 * 2 1 3 5 5 C 1.55163 * 102.94041 * 141.61126 * 4 2 1 6 6 H 1.09006 * 110.99934 * 206.38284 * 5 4 2 7 7 N 1.46494 * 111.00700 * 82.57150 * 5 4 2 8 8 C 1.36940 * 120.00394 * 154.99959 * 7 5 4 9 9 H 1.07999 * 119.99438 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99982 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99472 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00086 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47025 * 90.00710 * 12 10 8 14 14 H 1.48500 * 109.46962 * 210.00279 * 12 10 8 15 15 H 1.48494 * 109.47393 * 330.00217 * 12 10 8 16 16 C 1.55127 * 101.48383 * 324.32614 * 5 4 2 17 17 N 1.47026 * 109.88248 * 238.98606 * 2 1 3 18 18 C 1.34773 * 125.64547 * 61.60192 * 17 2 1 19 19 O 1.21283 * 120.00360 * 359.72907 * 18 17 2 20 20 C 1.50706 * 120.00081 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47259 * 179.72770 * 20 18 17 22 22 O 1.21281 * 119.99992 * 359.97438 * 21 20 18 23 23 N 1.34778 * 119.99830 * 179.97438 * 21 20 18 24 24 C 1.46506 * 119.99945 * 179.97438 * 23 21 20 25 25 C 1.52996 * 109.46955 * 180.02562 * 24 23 21 26 26 F 1.39898 * 109.47086 * 60.00091 * 25 24 23 27 27 F 1.39896 * 109.46875 * 179.97438 * 25 24 23 28 28 F 1.39902 * 109.47248 * 300.00174 * 25 24 23 29 29 H 1.09004 * 109.46973 * 179.56057 * 1 2 3 30 30 H 1.09006 * 109.47030 * 299.55347 * 1 2 3 31 31 H 1.08992 * 109.47514 * 59.55867 * 1 2 3 32 32 H 1.09000 * 110.71642 * 259.96669 * 4 2 1 33 33 H 1.08993 * 110.72174 * 23.24596 * 4 2 1 34 34 H 0.97008 * 119.99899 * 334.99815 * 7 5 4 35 35 H 0.97005 * 119.99604 * 179.97438 * 11 10 8 36 36 H 1.08994 * 110.49854 * 278.45638 * 16 5 4 37 37 H 1.09008 * 110.33833 * 156.05946 * 16 5 4 38 38 H 1.09001 * 109.46564 * 299.73030 * 20 18 17 39 39 H 1.08998 * 109.47012 * 59.72084 * 20 18 17 40 40 H 0.96998 * 120.00160 * 0.02562 * 23 21 20 41 41 H 1.09000 * 109.46973 * 300.00268 * 24 23 21 42 42 H 1.09002 * 109.46843 * 60.00387 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7514 1.2416 5 6 3.2877 -1.5153 0.6901 6 1 3.4856 -2.4126 1.2765 7 7 4.4674 -0.6478 0.6483 8 6 5.7218 -1.1950 0.6968 9 1 5.8413 -2.2662 0.7662 10 6 6.8396 -0.3730 0.6577 11 7 8.0452 -0.8990 0.7048 12 14 6.6329 1.4797 0.5384 13 1 6.5622 2.0588 1.9040 14 1 7.7910 2.0613 -0.1866 15 1 5.3812 1.7917 -0.1971 16 6 2.8099 -1.8815 -0.7396 17 7 2.0300 -0.7124 -1.1850 18 6 1.8073 -0.3585 -2.4662 19 8 1.1390 0.6219 -2.7172 20 6 2.3832 -1.1849 -3.5872 21 6 1.9850 -0.5836 -4.9104 22 8 1.3006 0.4171 -4.9403 23 7 2.3895 -1.1580 -6.0606 24 6 2.0019 -0.5738 -7.3470 25 6 2.5867 -1.4128 -8.4850 26 9 2.0964 -2.7202 -8.3999 27 9 2.2161 -0.8552 -9.7133 28 9 3.9818 -1.4303 -8.3821 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3633 0.5069 0.8940 31 1 -0.3634 0.5206 -0.8859 32 1 2.3530 -0.0489 2.0199 33 1 1.3052 -1.4483 1.6161 34 1 4.3601 0.3143 0.5863 35 1 8.8264 -0.3246 0.6772 36 1 2.1801 -2.7708 -0.7155 37 1 3.6655 -2.0392 -1.3963 38 1 3.4701 -1.1990 -3.5068 39 1 2.0009 -2.2035 -3.5211 40 1 2.9366 -1.9587 -6.0367 41 1 0.9150 -0.5605 -7.4273 42 1 2.3837 0.4451 -7.4130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571488156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:01 Heat of formation + Delta-G solvation = -227.380623 kcal Electronic energy + Delta-G solvation = -29790.632964 eV Core-core repulsion = 24969.317953 eV Total energy + Delta-G solvation = -4821.315011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.23385 -48.74895 -48.70896 -41.57098 -40.45028 -38.56665 -36.15752 -35.80992 -33.52723 -33.27287 -31.67596 -30.52029 -29.55759 -26.68964 -25.39869 -24.63258 -23.51687 -22.09511 -21.40980 -20.00213 -19.69778 -19.69522 -19.51491 -19.04362 -18.36359 -17.50679 -17.00906 -16.97001 -16.63778 -16.21902 -15.99072 -15.61201 -15.60460 -15.39356 -15.18949 -15.13577 -14.88621 -14.85489 -14.79211 -14.63252 -14.45515 -14.19265 -14.00368 -13.65274 -13.41132 -13.24081 -13.01819 -12.98577 -12.89063 -12.69473 -12.37720 -12.05593 -11.97776 -11.74682 -11.48428 -11.29892 -11.02351 -10.51623 -10.46553 -9.65893 -9.18712 -8.00698 -5.31817 1.31489 1.36091 1.39105 1.43398 1.47299 1.70109 1.72870 2.24188 2.47318 2.60172 2.91990 3.13018 3.29853 3.37724 3.59021 3.65635 3.91486 3.95510 4.07154 4.12774 4.26489 4.30362 4.36503 4.39478 4.50733 4.72792 4.76660 4.86223 4.98579 4.99648 5.12853 5.20807 5.24248 5.36566 5.55317 5.83566 6.20276 6.24729 6.64391 7.02848 7.10077 7.29850 7.87704 8.03578 9.20281 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.003080 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.864655 B = 9087.895520 C =10550.838149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.131 3.869 3 H 0.040 0.960 4 C -0.126 4.126 5 C 0.159 3.841 6 H 0.093 0.907 7 N -0.744 5.744 8 C -0.216 4.216 9 H 0.076 0.924 10 C -0.054 4.054 11 N -0.978 5.978 12 Si 0.936 3.064 13 H -0.281 1.281 14 H -0.302 1.302 15 H -0.269 1.269 16 C 0.075 3.925 17 N -0.607 5.607 18 C 0.518 3.482 19 O -0.556 6.556 20 C -0.153 4.153 21 C 0.524 3.476 22 O -0.537 6.537 23 N -0.722 5.722 24 C 0.080 3.920 25 C 0.459 3.541 26 F -0.178 7.178 27 F -0.176 7.176 28 F -0.182 7.182 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.359 0.641 35 H 0.255 0.745 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.164 0.836 40 H 0.421 0.579 41 H 0.122 0.878 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.828 -6.274 -13.279 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.028 3.972 3 H 0.058 0.942 4 C -0.165 4.165 5 C 0.050 3.950 6 H 0.110 0.890 7 N -0.385 5.385 8 C -0.347 4.347 9 H 0.094 0.906 10 C -0.246 4.246 11 N -0.629 5.629 12 Si 0.766 3.234 13 H -0.207 1.207 14 H -0.229 1.229 15 H -0.195 1.195 16 C -0.050 4.050 17 N -0.341 5.341 18 C 0.306 3.694 19 O -0.433 6.433 20 C -0.195 4.195 21 C 0.310 3.690 22 O -0.412 6.412 23 N -0.379 5.379 24 C -0.046 4.046 25 C 0.405 3.595 26 F -0.160 7.160 27 F -0.158 7.158 28 F -0.163 7.163 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.191 0.809 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.259 0.741 41 H 0.140 0.860 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.520 -5.174 -13.515 21.962 hybrid contribution 1.006 1.022 -0.421 1.495 sum -15.513 -4.152 -13.936 21.263 Atomic orbital electron populations 1.22015 0.93716 1.02764 1.02071 1.21548 0.95066 0.95282 0.85347 0.94185 1.23060 0.97709 1.00232 0.95455 1.21671 0.85252 0.94323 0.93801 0.88955 1.42797 1.01949 1.04735 1.89011 1.19099 0.82781 0.93249 1.39602 0.90584 1.25237 0.95114 1.00737 1.03483 1.69828 0.97665 1.35320 1.60090 0.85702 0.76641 0.83249 0.77776 1.20722 1.22909 1.19460 1.23374 0.95080 0.87885 0.98616 1.48579 1.52171 1.28999 1.04322 1.20135 0.80782 0.85346 0.83125 1.90797 1.40601 1.28661 1.83282 1.21597 1.05805 1.02907 0.89218 1.20303 0.79350 0.83723 0.85585 1.90873 1.37641 1.25489 1.87194 1.45526 1.56301 1.32381 1.03725 1.22459 1.03744 0.97936 0.80437 1.20387 0.76210 0.79084 0.83841 1.93231 1.87499 1.39026 1.96225 1.93225 1.91285 1.85122 1.46131 1.93242 1.30552 1.96460 1.96082 0.90981 0.90263 0.94277 0.90240 0.86694 0.80866 0.93563 0.87945 0.90631 0.84050 0.81841 0.74101 0.86029 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.10 71.98 0.66 -2.86 16 2 C 0.13 3.62 3.45 45.34 0.16 3.77 16 3 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.13 -2.98 6.07 31.78 0.19 -2.79 16 5 C 0.16 4.65 3.72 46.46 0.17 4.82 16 6 H 0.09 2.58 8.09 -2.38 -0.02 2.56 16 7 N -0.74 -30.39 5.05 -316.01 -1.60 -31.99 16 8 C -0.22 -10.95 10.44 84.03 0.88 -10.07 16 9 H 0.08 4.08 8.06 -2.91 -0.02 4.06 16 10 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 11 N -0.98 -59.42 13.97 21.65 0.30 -59.11 16 12 Si 0.94 44.91 27.73 68.60 1.90 46.81 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 15 H -0.27 -12.33 6.52 99.48 0.65 -11.69 16 16 C 0.08 1.82 6.41 86.93 0.56 2.38 16 17 N -0.61 -16.97 3.06 -787.62 -2.41 -19.39 16 18 C 0.52 15.97 7.64 87.66 0.67 16.64 16 19 O -0.56 -22.35 13.21 20.40 0.27 -22.08 16 20 C -0.15 -3.16 5.18 29.10 0.15 -3.01 16 21 C 0.52 12.48 7.82 87.66 0.69 13.17 16 22 O -0.54 -18.61 14.18 20.41 0.29 -18.32 16 23 N -0.72 -11.25 5.42 -463.05 -2.51 -13.75 16 24 C 0.08 1.12 5.64 86.38 0.49 1.61 16 25 C 0.46 6.15 3.11 71.98 0.22 6.37 16 26 F -0.18 -2.47 17.18 44.97 0.77 -1.70 16 27 F -0.18 -2.61 17.32 44.97 0.78 -1.83 16 28 F -0.18 -2.85 17.18 44.97 0.77 -2.07 16 29 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.04 1.16 6.87 -2.39 -0.02 1.14 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.11 1.96 7.85 -2.39 -0.02 1.94 16 34 H 0.36 15.32 5.73 -92.70 -0.53 14.79 16 35 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.98 7.49 -2.38 -0.02 1.96 16 38 H 0.14 2.59 7.86 -2.39 -0.02 2.57 16 39 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.42 4.29 8.36 -92.71 -0.78 3.52 16 41 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -78.01 362.86 3.58 -74.43 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.28 Total: 21.48 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 5.30 Total: 27.53 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -6.21 Total: -124.24 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: 0.56 Total: -40.40 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 2.32 Total: -5.60 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -78.01 3.58 -74.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.951 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds