Wall clock time and date at job start Tue Mar 31 2020 20:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 6 6 H 1.09004 * 111.00348 * 82.60834 * 5 4 2 7 7 N 1.46497 * 111.00940 * 206.42272 * 5 4 2 8 8 C 1.36935 * 120.00199 * 204.99877 * 7 5 4 9 9 H 1.07998 * 119.99877 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00162 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99895 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99929 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47497 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47291 * 119.99927 * 12 10 8 15 15 H 1.48509 * 109.46589 * 239.99561 * 12 10 8 16 16 C 1.54907 * 101.58028 * 324.49859 * 5 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34780 * 125.64274 * 300.45579 * 17 2 1 19 19 O 1.21270 * 120.00380 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99384 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.46635 * 180.02562 * 20 18 17 22 22 O 1.21280 * 120.00474 * 0.02562 * 21 20 18 23 23 N 1.34776 * 119.99498 * 180.02562 * 21 20 18 24 24 C 1.46506 * 119.99958 * 179.97438 * 23 21 20 25 25 C 1.53001 * 109.47334 * 179.97438 * 24 23 21 26 26 F 1.39902 * 109.46860 * 59.99886 * 25 24 23 27 27 F 1.39899 * 109.47129 * 180.02562 * 25 24 23 28 28 F 1.39906 * 109.47062 * 300.00428 * 25 24 23 29 29 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 32 32 H 1.09000 * 110.71809 * 21.13997 * 4 2 1 33 33 H 1.09002 * 110.72272 * 144.23157 * 4 2 1 34 34 H 0.97000 * 119.99782 * 24.99822 * 7 5 4 35 35 H 0.96997 * 120.00581 * 180.02562 * 11 10 8 36 36 H 1.09001 * 110.36979 * 155.84714 * 16 5 4 37 37 H 1.08999 * 110.36689 * 278.06189 * 16 5 4 38 38 H 1.08999 * 109.46840 * 300.00108 * 20 18 17 39 39 H 1.08993 * 109.46953 * 60.00231 * 20 18 17 40 40 H 0.96996 * 120.00247 * 359.97438 * 23 21 20 41 41 H 1.08998 * 109.47053 * 300.00157 * 24 23 21 42 42 H 1.09006 * 109.46910 * 59.99867 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 2.3519 -2.1685 -0.6954 6 1 1.4454 -2.7729 -0.6649 7 7 3.3938 -2.8291 -1.4855 8 6 3.4569 -4.1964 -1.5286 9 1 2.7384 -4.7876 -0.9804 10 6 4.4438 -4.8224 -2.2777 11 7 5.3185 -4.1018 -2.9469 12 14 4.5295 -6.6874 -2.3370 13 1 3.4403 -7.2597 -1.5054 14 1 4.3740 -7.1457 -3.7408 15 1 5.8428 -7.1395 -1.8112 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7750 -0.3880 2.4652 19 8 1.0780 0.5714 2.7188 20 6 2.3554 -1.2146 3.5838 21 6 1.9221 -0.6417 4.9086 22 8 1.2116 0.3407 4.9413 23 7 2.3241 -1.2211 6.0571 24 6 1.9034 -0.6639 7.3451 25 6 2.4924 -1.5032 8.4807 26 9 3.8889 -1.4846 8.3983 27 9 2.0902 -0.9714 9.7106 28 9 2.0363 -2.8213 8.3715 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.4980 -0.8990 31 1 -0.3634 0.5296 0.8808 32 1 1.2919 -0.7862 -2.0211 33 1 2.9640 -0.2790 -1.6204 34 1 4.0389 -2.2981 -1.9782 35 1 6.0079 -4.5391 -3.4707 36 1 2.7088 -2.7100 1.3885 37 1 3.9096 -1.5695 0.7110 38 1 2.0000 -2.2416 3.4987 39 1 3.4433 -1.2001 3.5196 40 1 2.8920 -2.0071 6.0310 41 1 2.2583 0.3631 7.4299 42 1 0.8153 -0.6788 7.4094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571488157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:05 Heat of formation + Delta-G solvation = -207.036403 kcal Electronic energy + Delta-G solvation = -29253.367282 eV Core-core repulsion = 24432.934462 eV Total energy + Delta-G solvation = -4820.432820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.64263 -48.15663 -48.11709 -40.53001 -39.37216 -37.27152 -35.30736 -34.21413 -32.39388 -31.39578 -30.77666 -28.85439 -28.31220 -25.47926 -24.12016 -23.79346 -22.31722 -21.13787 -20.19256 -19.11220 -18.99530 -18.87720 -18.27307 -17.46305 -17.31952 -16.31518 -16.09749 -15.94112 -15.40519 -15.14719 -15.00953 -14.84107 -14.59701 -14.54251 -14.27165 -14.26516 -14.18000 -13.81544 -13.50736 -13.31577 -13.22745 -12.96215 -12.88493 -12.47719 -12.41941 -12.22242 -11.82415 -11.71174 -11.24177 -11.04111 -10.83488 -10.67196 -10.29824 -10.28715 -10.04571 -9.83650 -9.71375 -9.39796 -9.07772 -8.35905 -7.16364 -5.92193 -3.23380 1.98354 2.33644 2.40087 2.81960 3.16886 3.21957 3.34004 3.40352 3.42418 3.48840 3.73318 4.28104 4.43691 4.59182 4.63754 4.83797 5.01685 5.02766 5.10681 5.16988 5.27459 5.44193 5.55464 5.59940 5.68810 5.82263 5.83443 6.05406 6.07997 6.18529 6.27158 6.41798 6.50394 6.62337 6.79597 6.89292 7.56633 7.77149 7.84747 8.25055 8.39959 9.37342 9.90968 10.25638 11.29736 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.002559 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.311666 B =10938.813056 C =12920.754528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.069 0.931 4 C -0.138 4.138 5 C 0.174 3.826 6 H 0.068 0.932 7 N -0.712 5.712 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.070 3.930 17 N -0.611 5.611 18 C 0.528 3.472 19 O -0.509 6.509 20 C -0.160 4.160 21 C 0.523 3.477 22 O -0.484 6.484 23 N -0.738 5.738 24 C 0.081 3.919 25 C 0.448 3.552 26 F -0.178 7.178 27 F -0.174 7.174 28 F -0.178 7.178 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.407 0.593 41 H 0.114 0.886 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 5.851 19.098 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.087 0.913 4 C -0.177 4.177 5 C 0.061 3.939 6 H 0.086 0.914 7 N -0.352 5.352 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.056 4.056 17 N -0.347 5.347 18 C 0.314 3.686 19 O -0.383 6.383 20 C -0.203 4.203 21 C 0.308 3.692 22 O -0.354 6.354 23 N -0.396 5.396 24 C -0.045 4.045 25 C 0.394 3.606 26 F -0.159 7.159 27 F -0.155 7.155 28 F -0.159 7.159 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.243 0.757 41 H 0.132 0.868 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.412 6.926 19.331 21.512 hybrid contribution 0.964 -1.613 0.062 1.880 sum -5.448 5.313 19.392 20.832 Atomic orbital electron populations 1.22138 0.95081 1.02256 1.02457 1.21462 0.94349 0.95859 0.84528 0.91277 1.23033 1.01740 0.97120 0.95850 1.21267 0.92788 0.91316 0.88481 0.91414 1.42343 1.33347 1.04072 1.55414 1.19288 1.11198 0.82483 1.25066 0.90893 1.24778 0.97962 0.98025 0.99718 1.69662 1.18977 1.34141 1.34796 0.86121 0.77379 0.85254 0.77399 1.20442 1.21754 1.21752 1.23523 0.95057 0.87065 0.99990 1.48598 1.50735 1.31047 1.04319 1.19411 0.81726 0.85318 0.82182 1.90809 1.37271 1.27750 1.82507 1.21553 1.04746 1.02433 0.91538 1.20120 0.80511 0.84010 0.84531 1.90887 1.34059 1.23988 1.86438 1.45731 1.55572 1.34117 1.04214 1.22397 1.02926 0.98207 0.80963 1.20567 0.76602 0.79355 0.84096 1.93238 1.30017 1.96410 1.96246 1.93229 1.90404 1.86061 1.45852 1.93239 1.88664 1.37990 1.96022 0.92502 0.92006 0.91432 0.90168 0.90604 0.77840 0.93324 0.91359 0.91168 0.85708 0.85730 0.75694 0.86771 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.05 37.16 0.34 -1.85 16 2 C 0.14 2.03 3.49 -66.96 -0.23 1.79 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.06 6.14 -24.90 -0.15 -2.22 16 5 C 0.17 3.03 3.71 -65.79 -0.24 2.78 16 6 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 7 N -0.71 -15.93 5.24 -51.35 -0.27 -16.20 16 8 C -0.25 -6.29 9.96 -15.06 -0.15 -6.44 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16 12 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.07 1.05 6.39 -2.53 -0.02 1.03 16 17 N -0.61 -8.87 3.08 -163.02 -0.50 -9.37 16 18 C 0.53 7.83 7.62 -10.98 -0.08 7.74 16 19 O -0.51 -9.45 13.09 -18.95 -0.25 -9.70 16 20 C -0.16 -1.65 5.19 -29.03 -0.15 -1.80 16 21 C 0.52 5.92 7.82 -10.99 -0.09 5.83 16 22 O -0.48 -7.74 14.18 -18.96 -0.27 -8.01 16 23 N -0.74 -5.65 5.42 -60.29 -0.33 -5.97 16 24 C 0.08 0.54 5.64 -4.04 -0.02 0.52 16 25 C 0.45 2.99 3.11 37.16 0.12 3.10 16 26 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 27 F -0.17 -1.27 17.32 2.25 0.04 -1.24 16 28 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.03 6.77 -51.93 -0.35 0.68 16 32 H 0.08 1.13 7.83 -51.93 -0.41 0.73 16 33 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 34 H 0.39 9.31 7.77 -40.82 -0.32 8.99 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.07 0.94 7.48 -51.93 -0.39 0.55 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.13 1.00 7.85 -51.93 -0.41 0.59 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.41 2.21 8.36 -40.82 -0.34 1.87 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -32.83 365.52 -6.63 -39.46 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.55 Total: 7.56 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.78 Total: 10.19 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.37 Total: -57.09 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.52 Total: -17.71 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.12 Total: -3.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.83 -6.63 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.580 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds