Wall clock time and date at job start Tue Mar 31 2020 20:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 6 6 H 1.09004 * 111.00348 * 82.60834 * 5 4 2 7 7 N 1.46497 * 111.00940 * 206.42272 * 5 4 2 8 8 C 1.36935 * 120.00199 * 204.99877 * 7 5 4 9 9 H 1.07998 * 119.99877 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00162 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99895 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99929 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47497 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47291 * 119.99927 * 12 10 8 15 15 H 1.48509 * 109.46589 * 239.99561 * 12 10 8 16 16 C 1.54907 * 101.58028 * 324.49859 * 5 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34780 * 125.64274 * 300.45579 * 17 2 1 19 19 O 1.21270 * 120.00380 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99384 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.46635 * 180.02562 * 20 18 17 22 22 O 1.21280 * 120.00474 * 0.02562 * 21 20 18 23 23 N 1.34776 * 119.99498 * 180.02562 * 21 20 18 24 24 C 1.46506 * 119.99958 * 179.97438 * 23 21 20 25 25 C 1.53001 * 109.47334 * 179.97438 * 24 23 21 26 26 F 1.39902 * 109.46860 * 59.99886 * 25 24 23 27 27 F 1.39899 * 109.47129 * 180.02562 * 25 24 23 28 28 F 1.39906 * 109.47062 * 300.00428 * 25 24 23 29 29 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 32 32 H 1.09000 * 110.71809 * 21.13997 * 4 2 1 33 33 H 1.09002 * 110.72272 * 144.23157 * 4 2 1 34 34 H 0.97000 * 119.99782 * 24.99822 * 7 5 4 35 35 H 0.96997 * 120.00581 * 180.02562 * 11 10 8 36 36 H 1.09001 * 110.36979 * 155.84714 * 16 5 4 37 37 H 1.08999 * 110.36689 * 278.06189 * 16 5 4 38 38 H 1.08999 * 109.46840 * 300.00108 * 20 18 17 39 39 H 1.08993 * 109.46953 * 60.00231 * 20 18 17 40 40 H 0.96996 * 120.00247 * 359.97438 * 23 21 20 41 41 H 1.08998 * 109.47053 * 300.00157 * 24 23 21 42 42 H 1.09006 * 109.46910 * 59.99867 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 2.3519 -2.1685 -0.6954 6 1 1.4454 -2.7729 -0.6649 7 7 3.3938 -2.8291 -1.4855 8 6 3.4569 -4.1964 -1.5286 9 1 2.7384 -4.7876 -0.9804 10 6 4.4438 -4.8224 -2.2777 11 7 5.3185 -4.1018 -2.9469 12 14 4.5295 -6.6874 -2.3370 13 1 3.4403 -7.2597 -1.5054 14 1 4.3740 -7.1457 -3.7408 15 1 5.8428 -7.1395 -1.8112 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7750 -0.3880 2.4652 19 8 1.0780 0.5714 2.7188 20 6 2.3554 -1.2146 3.5838 21 6 1.9221 -0.6417 4.9086 22 8 1.2116 0.3407 4.9413 23 7 2.3241 -1.2211 6.0571 24 6 1.9034 -0.6639 7.3451 25 6 2.4924 -1.5032 8.4807 26 9 3.8889 -1.4846 8.3983 27 9 2.0902 -0.9714 9.7106 28 9 2.0363 -2.8213 8.3715 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.4980 -0.8990 31 1 -0.3634 0.5296 0.8808 32 1 1.2919 -0.7862 -2.0211 33 1 2.9640 -0.2790 -1.6204 34 1 4.0389 -2.2981 -1.9782 35 1 6.0079 -4.5391 -3.4707 36 1 2.7088 -2.7100 1.3885 37 1 3.9096 -1.5695 0.7110 38 1 2.0000 -2.2416 3.4987 39 1 3.4433 -1.2001 3.5196 40 1 2.8920 -2.0071 6.0310 41 1 2.2583 0.3631 7.4299 42 1 0.8153 -0.6788 7.4094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571488157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:04 Heat of formation + Delta-G solvation = -228.931830 kcal Electronic energy + Delta-G solvation = -29254.316739 eV Core-core repulsion = 24432.934462 eV Total energy + Delta-G solvation = -4821.382277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.21510 -48.73158 -48.69236 -41.57265 -40.42541 -38.52282 -36.14590 -35.86730 -33.52228 -33.07103 -31.68146 -29.95278 -29.51898 -26.68087 -25.76655 -24.59452 -23.43475 -22.12157 -21.43191 -20.03361 -19.67825 -19.50225 -19.25625 -19.04400 -18.36234 -17.33505 -17.00761 -16.86044 -16.60497 -16.22853 -16.05755 -15.66183 -15.51758 -15.31868 -15.12070 -15.10737 -14.85364 -14.83741 -14.68878 -14.58531 -14.32662 -14.27060 -14.07667 -13.74517 -13.25326 -13.07192 -12.99415 -12.95854 -12.81835 -12.77724 -12.22740 -12.07629 -11.99262 -11.66764 -11.40289 -11.29742 -10.94521 -10.51218 -10.44331 -9.59321 -9.00206 -7.90767 -5.20164 1.32865 1.49164 1.53245 1.55109 1.63566 1.70075 1.71695 2.19169 2.60806 2.62374 2.93825 3.14555 3.33901 3.41911 3.60563 3.91731 3.93888 4.01780 4.09773 4.16190 4.29035 4.30832 4.37637 4.42751 4.53323 4.56821 4.75858 4.85946 4.96676 5.01093 5.07740 5.20147 5.29860 5.38476 5.51650 5.60569 6.22267 6.30473 6.61003 7.04341 7.27908 7.38439 8.10522 8.33904 9.32390 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.002559 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.311666 B =10938.813056 C =12920.754528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 H 0.067 0.933 4 C -0.127 4.127 5 C 0.166 3.834 6 H 0.067 0.933 7 N -0.724 5.724 8 C -0.237 4.237 9 H 0.083 0.917 10 C -0.071 4.071 11 N -0.968 5.968 12 Si 0.967 3.033 13 H -0.263 1.263 14 H -0.300 1.300 15 H -0.296 1.296 16 C 0.084 3.916 17 N -0.610 5.610 18 C 0.522 3.478 19 O -0.549 6.549 20 C -0.155 4.155 21 C 0.526 3.474 22 O -0.537 6.537 23 N -0.722 5.722 24 C 0.080 3.920 25 C 0.458 3.542 26 F -0.181 7.181 27 F -0.177 7.177 28 F -0.181 7.181 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.421 0.579 41 H 0.119 0.881 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 4.799 20.354 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.166 4.166 5 C 0.056 3.944 6 H 0.085 0.915 7 N -0.362 5.362 8 C -0.368 4.368 9 H 0.101 0.899 10 C -0.264 4.264 11 N -0.618 5.618 12 Si 0.797 3.203 13 H -0.187 1.187 14 H -0.228 1.228 15 H -0.223 1.223 16 C -0.042 4.042 17 N -0.345 5.345 18 C 0.310 3.690 19 O -0.426 6.426 20 C -0.197 4.197 21 C 0.312 3.688 22 O -0.411 6.411 23 N -0.380 5.380 24 C -0.045 4.045 25 C 0.404 3.596 26 F -0.162 7.162 27 F -0.158 7.158 28 F -0.162 7.162 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.259 0.741 41 H 0.137 0.863 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.780 5.840 20.649 22.505 hybrid contribution 1.010 -1.223 -0.270 1.609 sum -5.771 4.617 20.379 21.678 Atomic orbital electron populations 1.22052 0.94351 1.02156 1.02483 1.21472 0.94887 0.95692 0.84322 0.91522 1.22926 1.01894 0.95504 0.96298 1.21436 0.91455 0.92136 0.89405 0.91483 1.42466 1.34197 1.03347 1.56229 1.19669 1.10088 0.83891 1.23183 0.89935 1.25490 0.98531 1.01714 1.00634 1.69804 1.20057 1.35437 1.36539 0.85168 0.77344 0.81004 0.76787 1.18689 1.22817 1.22344 1.23208 0.94557 0.87845 0.98555 1.48629 1.50526 1.30755 1.04566 1.20143 0.80996 0.85139 0.82765 1.90804 1.39098 1.29701 1.83015 1.21616 1.06161 1.02732 0.89151 1.20260 0.79731 0.83305 0.85522 1.90878 1.36675 1.26411 1.87170 1.45532 1.54726 1.33964 1.03740 1.22461 1.03298 0.98397 0.80370 1.20425 0.76295 0.79045 0.83848 1.93236 1.30325 1.96408 1.96247 1.93226 1.90429 1.86107 1.46058 1.93237 1.88688 1.38255 1.96022 0.92503 0.90184 0.93269 0.89279 0.90977 0.79127 0.94124 0.89373 0.91695 0.82725 0.82912 0.74102 0.86337 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.05 71.98 0.65 -3.30 16 2 C 0.14 3.83 3.49 45.34 0.16 3.99 16 3 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 4 C -0.13 -3.62 6.14 31.78 0.20 -3.43 16 5 C 0.17 5.49 3.71 46.38 0.17 5.66 16 6 H 0.07 2.25 8.09 -2.38 -0.02 2.23 16 7 N -0.72 -31.65 5.24 -316.39 -1.66 -33.31 16 8 C -0.24 -11.60 9.96 84.03 0.84 -10.76 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 11 N -0.97 -55.23 13.06 21.65 0.28 -54.95 16 12 Si 0.97 42.61 29.55 68.60 2.03 44.64 16 13 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 14 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 15 H -0.30 -13.17 7.11 99.48 0.71 -12.47 16 16 C 0.08 2.32 6.39 86.85 0.55 2.87 16 17 N -0.61 -16.59 3.08 -788.06 -2.43 -19.02 16 18 C 0.52 14.66 7.62 87.66 0.67 15.33 16 19 O -0.55 -20.27 13.09 20.44 0.27 -20.00 16 20 C -0.15 -2.75 5.19 29.10 0.15 -2.60 16 21 C 0.53 10.97 7.82 87.66 0.69 11.66 16 22 O -0.54 -16.98 14.18 20.41 0.29 -16.69 16 23 N -0.72 -9.41 5.42 -463.04 -2.51 -11.92 16 24 C 0.08 0.95 5.64 86.38 0.49 1.43 16 25 C 0.46 5.29 3.11 71.98 0.22 5.51 16 26 F -0.18 -2.35 17.18 44.97 0.77 -1.58 16 27 F -0.18 -2.34 17.32 44.97 0.78 -1.56 16 28 F -0.18 -2.34 17.18 44.97 0.77 -1.57 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.47 6.77 -2.38 -0.02 1.46 16 32 H 0.09 2.37 7.83 -2.39 -0.02 2.35 16 33 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 34 H 0.38 18.06 7.77 -92.71 -0.72 17.34 16 35 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.09 2.11 7.48 -2.39 -0.02 2.09 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.16 1.84 7.85 -2.39 -0.02 1.82 16 39 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.42 3.29 8.36 -92.71 -0.78 2.51 16 41 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -71.26 365.52 3.43 -67.82 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.41 Total: 25.04 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 5.25 Total: 23.09 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.31 Total: -119.19 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: 0.56 Total: -36.69 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 2.32 Total: -4.70 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -71.26 3.43 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571488157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.111 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds