Wall clock time and date at job start Tue Mar 31 2020 20:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.27448 * 2 1 4 4 C 1.55498 * 110.36813 * 237.89013 * 2 1 3 5 5 C 1.55302 * 100.69357 * 204.60876 * 4 2 1 6 6 H 1.09006 * 110.84692 * 152.42018 * 5 4 2 7 7 C 1.50705 * 110.84873 * 275.83367 * 5 4 2 8 8 O 1.21273 * 119.99515 * 44.52271 * 7 5 4 9 9 N 1.34777 * 120.00025 * 224.79656 * 7 5 4 10 10 C 1.38479 * 119.99714 * 185.75866 * 9 7 5 11 11 C 1.39236 * 126.43029 * 112.29497 * 10 9 7 12 12 C 1.46746 * 126.51623 * 359.97438 * 11 10 9 13 13 O 1.21591 * 119.99793 * 0.02562 * 12 11 10 14 14 O 1.34828 * 120.00081 * 179.97438 * 12 11 10 15 15 C 1.41473 * 106.97220 * 179.97438 * 11 10 9 16 16 N 1.30314 * 108.16943 * 359.97438 * 15 11 10 17 17 N 1.34771 * 126.43585 * 291.98046 * 10 9 7 18 18 C 1.46498 * 125.73766 * 0.02562 * 17 10 9 19 19 C 1.50702 * 109.46812 * 95.05344 * 18 17 10 20 20 H 1.07989 * 120.00209 * 5.28580 * 19 18 17 21 21 C 1.37878 * 119.99843 * 185.28574 * 19 18 17 22 22 N 1.31514 * 120.00196 * 184.60929 * 21 19 18 23 23 Si 1.86803 * 120.00108 * 4.60670 * 21 19 18 24 24 H 1.48500 * 109.47067 * 92.88249 * 23 21 19 25 25 H 1.48493 * 109.47359 * 212.88656 * 23 21 19 26 26 H 1.48507 * 109.47111 * 332.88565 * 23 21 19 27 27 C 1.54381 * 102.44047 * 34.12903 * 5 4 2 28 28 H 1.08995 * 109.83130 * 98.05246 * 27 5 4 29 29 C 1.52997 * 109.83313 * 219.02821 * 27 5 4 30 30 O 1.43243 * 107.58650 * 338.54001 * 27 5 4 31 31 H 1.09002 * 109.47246 * 299.36801 * 1 2 3 32 32 H 1.09003 * 109.47192 * 59.36472 * 1 2 3 33 33 H 1.09001 * 109.47428 * 179.36459 * 1 2 3 34 34 H 1.09005 * 111.33080 * 86.73681 * 4 2 1 35 35 H 1.09002 * 111.14838 * 322.40353 * 4 2 1 36 36 H 0.96996 * 119.99837 * 5.75917 * 9 7 5 37 37 H 0.96705 * 116.99953 * 180.02562 * 14 12 11 38 38 H 1.08003 * 125.91913 * 180.02562 * 15 11 10 39 39 H 1.09002 * 109.46964 * 215.05279 * 18 17 10 40 40 H 1.08997 * 109.47603 * 335.05284 * 18 17 10 41 41 H 0.96999 * 120.00269 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.47174 * 66.95275 * 29 27 5 43 43 H 1.08998 * 109.47034 * 186.95850 * 29 27 5 44 44 H 1.09004 * 109.46874 * 306.95896 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0712 -0.7749 -1.2348 5 6 3.4722 -1.2000 -0.7168 6 1 3.8040 -2.1170 -1.2039 7 6 4.4767 -0.0948 -0.9183 8 8 4.1841 1.0486 -0.6395 9 7 5.6982 -0.3763 -1.4134 10 6 6.6610 0.6163 -1.4872 11 6 7.8385 0.6827 -0.7471 12 6 8.2937 -0.2846 0.2582 13 8 7.6164 -1.2620 0.5120 14 8 9.4636 -0.0901 0.8996 15 6 8.5127 1.8599 -1.1485 16 7 7.7919 2.4504 -2.0594 17 7 6.6370 1.6963 -2.2930 18 6 5.5784 2.0263 -3.2503 19 6 4.5995 2.9759 -2.6090 20 1 4.7950 3.3679 -1.6220 21 6 3.4542 3.3441 -3.2826 22 7 2.6454 4.2416 -2.7629 23 14 3.0512 2.5683 -4.9335 24 1 2.1770 1.3862 -4.7247 25 1 2.3484 3.5591 -5.7876 26 1 4.3080 2.1429 -5.6005 27 6 3.2126 -1.4393 0.7861 28 1 3.0651 -2.5033 0.9711 29 6 4.3990 -0.9279 1.6057 30 8 2.0286 -0.7156 1.1414 31 1 -0.3634 0.5040 0.8956 32 1 -0.3634 0.5237 -0.8842 33 1 -0.3634 -1.0276 -0.0114 34 1 2.1550 -0.1245 -2.1055 35 1 1.4529 -1.6452 -1.4548 36 1 5.9028 -1.2742 -1.7180 37 1 9.7217 -0.7546 1.5531 38 1 9.4610 2.2084 -0.7667 39 1 6.0177 2.4966 -4.1300 40 1 5.0594 1.1148 -3.5467 41 1 1.8395 4.5003 -3.2366 42 1 4.4546 0.1578 1.5260 43 1 4.2671 -1.2093 2.6504 44 1 5.3205 -1.3678 1.2244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573633726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:18 Heat of formation + Delta-G solvation = -89.004265 kcal Electronic energy + Delta-G solvation = -31537.577605 eV Core-core repulsion = 27264.119784 eV Total energy + Delta-G solvation = -4273.457822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.38163 -40.29098 -39.32986 -38.00904 -35.76221 -34.49635 -33.80540 -32.61165 -32.24249 -31.85813 -29.29682 -28.63700 -28.02197 -24.80342 -23.78679 -22.79539 -22.61169 -20.95714 -20.61905 -19.94142 -19.55704 -17.80042 -17.68342 -17.32569 -17.07882 -16.18519 -15.69164 -15.56410 -15.26955 -14.95516 -14.63150 -14.33729 -14.10564 -13.58403 -13.55751 -13.50281 -13.10432 -13.03189 -12.68439 -12.55300 -12.27182 -12.16672 -11.91631 -11.72194 -11.62252 -11.34332 -11.24767 -11.19179 -11.04360 -10.84503 -10.72502 -10.58279 -10.44118 -10.10394 -9.77733 -9.56873 -9.35411 -9.22420 -8.75189 -8.67809 -8.24391 -6.22096 -4.21434 1.58539 2.44391 2.65404 2.85227 3.06377 3.13099 3.17489 3.29920 3.46246 3.65169 3.93086 4.18604 4.54092 4.66590 4.82986 4.95198 5.08546 5.14264 5.26575 5.36167 5.38334 5.51643 5.56847 5.59282 5.68789 5.80817 5.88060 5.91192 6.05099 6.07527 6.13277 6.18722 6.32575 6.33945 6.45721 6.53082 6.54998 6.71782 6.85001 7.21536 7.29228 7.34643 7.51403 8.04230 8.23751 8.28915 8.48226 8.91969 9.31041 10.90693 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.006879 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.617232 B = 4069.272701 C = 6607.480189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.095 0.905 4 C -0.133 4.133 5 C -0.136 4.136 6 H 0.103 0.897 7 C 0.515 3.485 8 O -0.448 6.448 9 N -0.660 5.660 10 C 0.389 3.611 11 C -0.311 4.311 12 C 0.567 3.433 13 O -0.535 6.535 14 O -0.516 6.516 15 C 0.091 3.909 16 N -0.275 5.275 17 N -0.299 5.299 18 C 0.227 3.773 19 C -0.515 4.515 20 H 0.089 0.911 21 C 0.084 3.916 22 N -0.878 5.878 23 Si 0.859 3.141 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 C 0.103 3.897 28 H 0.085 0.915 29 C -0.178 4.178 30 O -0.375 6.375 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.415 0.585 37 H 0.407 0.593 38 H 0.192 0.808 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.266 0.734 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -14.427 3.325 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.113 0.887 4 C -0.171 4.171 5 C -0.158 4.158 6 H 0.121 0.879 7 C 0.300 3.700 8 O -0.315 6.315 9 N -0.316 5.316 10 C 0.159 3.841 11 C -0.327 4.327 12 C 0.414 3.586 13 O -0.426 6.426 14 O -0.327 6.327 15 C -0.096 4.096 16 N -0.096 5.096 17 N -0.077 5.077 18 C 0.109 3.891 19 C -0.553 4.553 20 H 0.107 0.893 21 C -0.120 4.120 22 N -0.515 5.515 23 Si 0.685 3.315 24 H -0.199 1.199 25 H -0.204 1.204 26 H -0.192 1.192 27 C 0.045 3.955 28 H 0.103 0.897 29 C -0.236 4.236 30 O -0.295 6.295 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.254 0.746 37 H 0.264 0.736 38 H 0.209 0.791 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.720 -12.334 2.586 13.140 hybrid contribution 0.115 -1.940 -0.371 1.978 sum 3.836 -14.273 2.214 14.945 Atomic orbital electron populations 1.21868 0.94081 1.01944 1.02601 1.23206 0.94235 0.97337 0.83308 0.88709 1.23336 0.92792 1.01003 0.99990 1.22858 0.95862 0.98148 0.98934 0.87906 1.20377 0.81229 0.90603 0.77752 1.91008 1.75933 1.20085 1.44444 1.42620 1.11701 1.11161 1.66124 1.17670 0.88906 0.86453 0.91083 1.18716 1.01347 1.03045 1.09616 1.19499 0.77575 0.83151 0.78419 1.90813 1.55861 1.30733 1.65200 1.84586 1.39233 1.54791 1.54101 1.23883 0.99427 0.91654 0.94633 1.77279 0.94623 1.17455 1.20243 1.49517 1.16214 1.14658 1.27347 1.20235 0.83825 0.97754 0.87277 1.20932 1.03531 1.25837 1.05033 0.89285 1.24690 0.95709 0.94736 0.96892 1.69859 1.12950 1.30180 1.38553 0.87153 0.79310 0.80005 0.85020 1.19892 1.20361 1.19188 1.22463 0.86489 0.96072 0.90450 0.89701 1.22373 0.97434 1.03375 1.00369 1.88388 1.41375 1.65032 1.34719 0.91944 0.91159 0.92529 0.88995 0.89723 0.74605 0.73609 0.79136 0.92805 0.94357 0.92316 0.91228 0.92200 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.63 37.16 0.36 -1.70 16 2 C 0.08 1.27 3.64 -25.41 -0.09 1.18 16 3 H 0.10 1.97 7.00 -51.93 -0.36 1.60 16 4 C -0.13 -1.96 5.98 -24.18 -0.14 -2.10 16 5 C -0.14 -1.93 3.43 -89.82 -0.31 -2.24 16 6 H 0.10 1.07 8.01 -51.93 -0.42 0.65 16 7 C 0.52 9.24 4.65 -10.98 -0.05 9.19 16 8 O -0.45 -10.29 11.78 5.56 0.07 -10.22 16 9 N -0.66 -10.82 4.39 -11.08 -0.05 -10.87 16 10 C 0.39 7.35 6.50 -153.43 -1.00 6.35 16 11 C -0.31 -5.36 6.15 -104.86 -0.64 -6.00 16 12 C 0.57 8.49 8.31 34.17 0.28 8.77 16 13 O -0.53 -8.51 15.78 -19.34 -0.31 -8.81 16 14 O -0.52 -5.84 13.28 -40.84 -0.54 -6.38 16 15 C 0.09 1.53 11.86 -16.96 -0.20 1.33 16 16 N -0.28 -5.63 12.47 30.88 0.39 -5.24 16 17 N -0.30 -6.39 3.58 -61.12 -0.22 -6.61 16 18 C 0.23 5.26 4.72 -5.19 -0.02 5.23 16 19 C -0.52 -14.11 7.90 -34.44 -0.27 -14.38 16 20 H 0.09 2.86 7.91 -52.49 -0.42 2.44 16 21 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 22 N -0.88 -25.85 13.96 55.43 0.77 -25.07 16 23 Si 0.86 19.63 27.39 -169.99 -4.66 14.97 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -5.77 6.69 56.52 0.38 -5.39 16 27 C 0.10 1.50 4.09 -26.01 -0.11 1.39 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 C -0.18 -2.79 8.47 37.16 0.31 -2.47 16 30 O -0.38 -6.31 10.70 -35.23 -0.38 -6.69 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 35 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.42 5.30 8.73 -40.82 -0.36 4.94 16 37 H 0.41 2.61 9.11 45.56 0.42 3.03 16 38 H 0.19 2.43 8.06 -52.48 -0.42 2.01 16 39 H 0.05 1.24 7.76 -51.93 -0.40 0.84 16 40 H 0.04 0.84 6.95 -51.93 -0.36 0.48 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.25 6.59 -51.93 -0.34 0.91 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -34.36 367.04 -6.50 -40.86 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.12 Total: 11.79 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.98 Total: 6.75 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.89 Total: -47.79 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.16 Total: -32.10 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.66 Total: 14.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.36 -6.50 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573633726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.147 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds