Wall clock time and date at job start Tue Mar 31 2020 20:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.27448 * 2 1 4 4 C 1.55498 * 110.36813 * 237.89013 * 2 1 3 5 5 C 1.55302 * 100.69357 * 204.60876 * 4 2 1 6 6 H 1.09006 * 110.84692 * 152.42018 * 5 4 2 7 7 C 1.50705 * 110.84873 * 275.83367 * 5 4 2 8 8 O 1.21273 * 119.99515 * 44.52271 * 7 5 4 9 9 N 1.34777 * 120.00025 * 224.79656 * 7 5 4 10 10 C 1.38479 * 119.99714 * 185.75866 * 9 7 5 11 11 C 1.39236 * 126.43029 * 112.29497 * 10 9 7 12 12 C 1.46746 * 126.51623 * 359.97438 * 11 10 9 13 13 O 1.21591 * 119.99793 * 0.02562 * 12 11 10 14 14 O 1.34828 * 120.00081 * 179.97438 * 12 11 10 15 15 C 1.41473 * 106.97220 * 179.97438 * 11 10 9 16 16 N 1.30314 * 108.16943 * 359.97438 * 15 11 10 17 17 N 1.34771 * 126.43585 * 291.98046 * 10 9 7 18 18 C 1.46498 * 125.73766 * 0.02562 * 17 10 9 19 19 C 1.50702 * 109.46812 * 95.05344 * 18 17 10 20 20 H 1.07989 * 120.00209 * 5.28580 * 19 18 17 21 21 C 1.37878 * 119.99843 * 185.28574 * 19 18 17 22 22 N 1.31514 * 120.00196 * 184.60929 * 21 19 18 23 23 Si 1.86803 * 120.00108 * 4.60670 * 21 19 18 24 24 H 1.48500 * 109.47067 * 92.88249 * 23 21 19 25 25 H 1.48493 * 109.47359 * 212.88656 * 23 21 19 26 26 H 1.48507 * 109.47111 * 332.88565 * 23 21 19 27 27 C 1.54381 * 102.44047 * 34.12903 * 5 4 2 28 28 H 1.08995 * 109.83130 * 98.05246 * 27 5 4 29 29 C 1.52997 * 109.83313 * 219.02821 * 27 5 4 30 30 O 1.43243 * 107.58650 * 338.54001 * 27 5 4 31 31 H 1.09002 * 109.47246 * 299.36801 * 1 2 3 32 32 H 1.09003 * 109.47192 * 59.36472 * 1 2 3 33 33 H 1.09001 * 109.47428 * 179.36459 * 1 2 3 34 34 H 1.09005 * 111.33080 * 86.73681 * 4 2 1 35 35 H 1.09002 * 111.14838 * 322.40353 * 4 2 1 36 36 H 0.96996 * 119.99837 * 5.75917 * 9 7 5 37 37 H 0.96705 * 116.99953 * 180.02562 * 14 12 11 38 38 H 1.08003 * 125.91913 * 180.02562 * 15 11 10 39 39 H 1.09002 * 109.46964 * 215.05279 * 18 17 10 40 40 H 1.08997 * 109.47603 * 335.05284 * 18 17 10 41 41 H 0.96999 * 120.00269 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.47174 * 66.95275 * 29 27 5 43 43 H 1.08998 * 109.47034 * 186.95850 * 29 27 5 44 44 H 1.09004 * 109.46874 * 306.95896 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0712 -0.7749 -1.2348 5 6 3.4722 -1.2000 -0.7168 6 1 3.8040 -2.1170 -1.2039 7 6 4.4767 -0.0948 -0.9183 8 8 4.1841 1.0486 -0.6395 9 7 5.6982 -0.3763 -1.4134 10 6 6.6610 0.6163 -1.4872 11 6 7.8385 0.6827 -0.7471 12 6 8.2937 -0.2846 0.2582 13 8 7.6164 -1.2620 0.5120 14 8 9.4636 -0.0901 0.8996 15 6 8.5127 1.8599 -1.1485 16 7 7.7919 2.4504 -2.0594 17 7 6.6370 1.6963 -2.2930 18 6 5.5784 2.0263 -3.2503 19 6 4.5995 2.9759 -2.6090 20 1 4.7950 3.3679 -1.6220 21 6 3.4542 3.3441 -3.2826 22 7 2.6454 4.2416 -2.7629 23 14 3.0512 2.5683 -4.9335 24 1 2.1770 1.3862 -4.7247 25 1 2.3484 3.5591 -5.7876 26 1 4.3080 2.1429 -5.6005 27 6 3.2126 -1.4393 0.7861 28 1 3.0651 -2.5033 0.9711 29 6 4.3990 -0.9279 1.6057 30 8 2.0286 -0.7156 1.1414 31 1 -0.3634 0.5040 0.8956 32 1 -0.3634 0.5237 -0.8842 33 1 -0.3634 -1.0276 -0.0114 34 1 2.1550 -0.1245 -2.1055 35 1 1.4529 -1.6452 -1.4548 36 1 5.9028 -1.2742 -1.7180 37 1 9.7217 -0.7546 1.5531 38 1 9.4610 2.2084 -0.7667 39 1 6.0177 2.4966 -4.1300 40 1 5.0594 1.1148 -3.5467 41 1 1.8395 4.5003 -3.2366 42 1 4.4546 0.1578 1.5260 43 1 4.2671 -1.2093 2.6504 44 1 5.3205 -1.3678 1.2244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573633726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:17 Heat of formation + Delta-G solvation = -115.984745 kcal Electronic energy + Delta-G solvation = -31538.747567 eV Core-core repulsion = 27264.119784 eV Total energy + Delta-G solvation = -4274.627783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.79577 -41.59856 -40.49322 -39.37902 -36.86027 -35.95986 -35.65880 -33.90475 -33.69195 -33.43274 -30.69775 -29.91585 -29.74924 -26.16034 -25.23512 -24.29951 -23.98567 -22.30226 -21.92709 -21.21760 -20.99607 -19.33958 -19.03197 -18.83739 -18.61052 -17.46944 -17.00208 -16.88072 -16.55870 -16.47931 -16.20648 -15.72557 -15.49843 -15.15579 -14.91063 -14.83279 -14.57650 -14.27698 -14.20927 -13.93138 -13.89960 -13.50374 -13.11332 -13.06748 -12.92102 -12.83924 -12.68939 -12.49870 -12.37483 -12.30323 -12.19422 -11.90950 -11.82913 -11.76710 -11.38346 -11.10932 -10.86432 -10.75745 -10.50997 -10.25702 -9.70202 -8.33554 -6.39514 0.19993 1.05897 1.21848 1.25898 1.31988 1.38831 1.49275 2.00804 2.20382 2.24149 2.41232 2.73885 2.96730 3.35523 3.47499 3.65365 3.68887 3.94031 4.08102 4.15111 4.18020 4.22953 4.32899 4.37801 4.39535 4.50993 4.62914 4.66562 4.72357 4.80656 4.87091 4.87878 4.95127 5.00542 5.19336 5.20075 5.23463 5.26660 5.48368 5.73290 5.80191 6.07156 6.20987 6.24370 6.58379 6.66075 7.14940 7.18444 7.19826 8.84175 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.006879 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.617232 B = 4069.272701 C = 6607.480189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.034 0.966 4 C -0.126 4.126 5 C -0.131 4.131 6 H 0.156 0.844 7 C 0.512 3.488 8 O -0.509 6.509 9 N -0.648 5.648 10 C 0.377 3.623 11 C -0.315 4.315 12 C 0.575 3.425 13 O -0.543 6.543 14 O -0.503 6.503 15 C 0.105 3.895 16 N -0.317 5.317 17 N -0.326 5.326 18 C 0.240 3.760 19 C -0.511 4.511 20 H 0.021 0.979 21 C 0.023 3.977 22 N -0.935 5.935 23 Si 0.934 3.066 24 H -0.254 1.254 25 H -0.278 1.278 26 H -0.241 1.241 27 C 0.099 3.901 28 H 0.131 0.869 29 C -0.170 4.170 30 O -0.390 6.390 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.434 0.566 37 H 0.432 0.568 38 H 0.232 0.768 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.268 0.732 42 H 0.022 0.978 43 H 0.070 0.930 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -18.763 2.376 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 H 0.052 0.948 4 C -0.164 4.164 5 C -0.152 4.152 6 H 0.174 0.826 7 C 0.299 3.701 8 O -0.380 6.380 9 N -0.305 5.305 10 C 0.149 3.851 11 C -0.331 4.331 12 C 0.421 3.579 13 O -0.436 6.436 14 O -0.316 6.316 15 C -0.082 4.082 16 N -0.137 5.137 17 N -0.105 5.105 18 C 0.120 3.880 19 C -0.550 4.550 20 H 0.040 0.960 21 C -0.176 4.176 22 N -0.574 5.574 23 Si 0.755 3.245 24 H -0.178 1.178 25 H -0.203 1.203 26 H -0.164 1.164 27 C 0.042 3.958 28 H 0.148 0.852 29 C -0.227 4.227 30 O -0.310 6.310 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.276 0.724 37 H 0.293 0.707 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.586 -16.739 1.659 17.435 hybrid contribution 0.054 -0.539 0.180 0.571 sum 4.639 -17.279 1.840 17.985 Atomic orbital electron populations 1.21823 0.91952 1.03734 1.02320 1.23054 0.95868 0.94870 0.84768 0.94821 1.23339 0.93671 1.01697 0.97682 1.23017 0.94372 0.98486 0.99352 0.82610 1.21214 0.81792 0.90830 0.76241 1.91024 1.77016 1.22953 1.46970 1.42651 1.10950 1.11515 1.65392 1.18113 0.89839 0.86387 0.90806 1.19052 1.00786 1.03618 1.09616 1.19085 0.78382 0.82321 0.78146 1.90805 1.56444 1.30876 1.65425 1.84514 1.37110 1.55676 1.54342 1.24565 0.99965 0.90807 0.92825 1.77207 0.95247 1.18805 1.22475 1.49276 1.16550 1.15981 1.28688 1.19858 0.83532 0.97186 0.87381 1.20826 1.05108 1.26657 1.02386 0.96026 1.25675 0.95144 0.94990 1.01783 1.70054 1.13850 1.32435 1.41094 0.85956 0.80264 0.79409 0.78892 1.17835 1.20330 1.16442 1.22774 0.85097 0.97837 0.90130 0.85163 1.22290 0.98621 1.00216 1.01617 1.88367 1.42221 1.65171 1.35260 0.92611 0.91187 0.89512 0.91577 0.85232 0.72371 0.70686 0.75221 0.92610 0.92589 0.92257 0.95899 0.91097 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.63 71.98 0.69 -3.17 16 2 C 0.07 2.44 3.64 31.45 0.11 2.56 16 3 H 0.03 1.55 7.00 -2.38 -0.02 1.53 16 4 C -0.13 -3.48 5.98 32.25 0.19 -3.29 16 5 C -0.13 -3.39 3.43 -10.28 -0.04 -3.43 16 6 H 0.16 2.37 8.01 -2.38 -0.02 2.35 16 7 C 0.51 18.41 4.65 87.66 0.41 18.82 16 8 O -0.51 -25.02 11.78 -3.01 -0.04 -25.05 16 9 N -0.65 -20.62 4.39 -307.35 -1.35 -21.97 16 10 C 0.38 14.28 6.50 132.54 0.86 15.14 16 11 C -0.31 -10.55 6.15 -20.02 -0.12 -10.67 16 12 C 0.57 15.90 8.31 70.05 0.58 16.48 16 13 O -0.54 -15.91 15.78 19.54 0.31 -15.60 16 14 O -0.50 -9.71 13.28 -57.40 -0.76 -10.47 16 15 C 0.11 3.46 11.86 85.72 1.02 4.47 16 16 N -0.32 -13.21 12.47 -56.22 -0.70 -13.91 16 17 N -0.33 -14.29 3.58 -347.30 -1.24 -15.53 16 18 C 0.24 11.34 4.72 85.63 0.40 11.75 16 19 C -0.51 -29.81 7.90 25.60 0.20 -29.61 16 20 H 0.02 1.51 7.91 -2.92 -0.02 1.49 16 21 C 0.02 1.32 5.47 84.65 0.46 1.78 16 22 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 23 Si 0.93 40.92 27.39 68.60 1.88 42.80 16 24 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.24 -9.50 6.69 99.48 0.67 -8.83 16 27 C 0.10 2.64 4.09 31.06 0.13 2.76 16 28 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 29 C -0.17 -5.21 8.47 71.98 0.61 -4.60 16 30 O -0.39 -12.90 10.70 -148.98 -1.59 -14.50 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.19 8.03 -2.38 -0.02 2.17 16 35 H 0.13 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.43 9.97 8.73 -92.71 -0.81 9.16 16 37 H 0.43 3.88 9.11 -74.05 -0.67 3.20 16 38 H 0.23 5.34 8.06 -2.91 -0.02 5.32 16 39 H 0.06 2.58 7.76 -2.39 -0.02 2.57 16 40 H 0.06 2.42 6.95 -2.39 -0.02 2.41 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.02 0.89 6.75 -2.38 -0.02 0.88 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.09 2.52 6.59 -2.38 -0.02 2.50 16 Total: -1.00 -84.93 367.04 1.86 -83.07 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.46 Total: 30.50 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 5.52 Total: 19.00 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -2.99 Total: -109.75 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -2.08 Total: -65.62 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.80 kcal Total: -84.93 1.86 -83.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573633726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.911 kcal (2) G-P(sol) polarization free energy of solvation -84.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds