Wall clock time and date at job start Tue Mar 31 2020 21:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47139 * 2 1 4 4 C 1.53007 * 109.47139 * 119.99686 * 2 1 3 5 5 C 1.50697 * 109.47303 * 185.00385 * 4 2 1 6 6 O 1.20822 * 119.99770 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99964 * 180.02562 * 5 4 2 8 8 N 1.46496 * 109.47491 * 239.99625 * 2 1 3 9 9 C 1.34775 * 119.99986 * 85.00087 * 8 2 1 10 10 O 1.21589 * 120.00064 * 359.97438 * 9 8 2 11 11 N 1.34774 * 120.00006 * 180.02562 * 9 8 2 12 12 C 1.39594 * 119.99891 * 179.97438 * 11 9 8 13 13 N 1.32266 * 119.72727 * 0.26464 * 12 11 9 14 14 C 1.31963 * 121.69068 * 180.26509 * 13 12 11 15 15 C 1.38075 * 120.95403 * 359.72759 * 14 13 12 16 16 C 1.38794 * 119.35183 * 359.97438 * 15 14 13 17 17 C 1.38781 * 118.44752 * 359.97438 * 16 15 14 18 18 O 1.35983 * 120.49767 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99537 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47141 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47494 * 119.99680 * 25 23 21 28 28 H 1.48505 * 109.47047 * 239.99860 * 25 23 21 29 29 H 1.09001 * 109.46892 * 60.00799 * 1 2 3 30 30 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47321 * 300.00263 * 1 2 3 32 32 H 1.08998 * 109.46909 * 305.00179 * 4 2 1 33 33 H 1.08997 * 109.46832 * 64.99946 * 4 2 1 34 34 H 0.96703 * 117.00108 * 179.97438 * 7 5 4 35 35 H 0.97000 * 120.00232 * 265.00129 * 8 2 1 36 36 H 0.97000 * 120.00212 * 359.97438 * 11 9 8 37 37 H 1.08000 * 119.52770 * 179.74706 * 14 13 12 38 38 H 1.07997 * 120.32417 * 179.97438 * 15 14 13 39 39 H 1.07993 * 120.77636 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.47490 * 59.99651 * 19 18 17 41 41 H 1.09001 * 109.47232 * 299.99005 * 19 18 17 42 42 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 43 43 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 44 44 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3129 6 8 4.1427 -0.0233 0.4475 7 8 4.2122 -1.1781 2.3303 8 7 2.0184 -0.6907 -1.1961 9 6 2.1472 -0.0184 -2.3570 10 8 1.8576 1.1612 -2.4119 11 7 2.5960 -0.6539 -3.4575 12 6 2.7289 0.0423 -4.6602 13 7 2.4177 1.3268 -4.7122 14 6 2.5237 2.0210 -5.8295 15 6 2.9720 1.4291 -6.9936 16 6 3.3158 0.0845 -6.9844 17 6 3.1955 -0.6206 -5.7951 18 8 3.5203 -1.9398 -5.7390 19 6 3.9831 -2.5459 -6.9476 20 6 4.2976 -4.0210 -6.6904 21 6 4.7850 -4.6603 -7.9651 22 1 4.8623 -4.0733 -8.8683 23 6 5.1312 -5.9948 -7.9784 24 7 5.0366 -6.7098 -6.8786 25 14 5.7361 -6.7871 -9.5582 26 1 5.7515 -5.7753 -10.6451 27 1 7.1089 -7.3151 -9.3532 28 1 4.8281 -7.9011 -9.9324 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7714 1.2057 34 1 5.1746 -1.0836 2.3278 35 1 2.2491 -1.6318 -1.1525 36 1 2.8268 -1.5950 -3.4139 37 1 2.2561 3.0673 -5.8334 38 1 3.0544 2.0068 -7.9023 39 1 3.6695 -0.4016 -7.8816 40 1 4.8847 -2.0364 -7.2875 41 1 3.2107 -2.4668 -7.7126 42 1 5.0700 -4.0998 -5.9255 43 1 3.3961 -4.5308 -6.3503 44 1 5.2805 -7.6485 -6.8879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607417493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:58 Heat of formation + Delta-G solvation = -117.326574 kcal Electronic energy + Delta-G solvation = -28636.032361 eV Core-core repulsion = 24361.346392 eV Total energy + Delta-G solvation = -4274.685969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.95010 -40.54341 -39.43776 -37.76661 -36.73968 -35.88554 -34.55013 -33.45921 -32.06283 -31.36074 -30.37023 -28.95991 -28.59648 -25.39344 -24.03794 -23.02782 -22.63204 -21.38772 -20.76283 -20.51865 -18.74150 -18.33178 -18.00102 -17.42415 -16.85655 -16.53529 -16.14198 -15.90661 -15.79949 -15.53056 -15.03749 -14.64225 -14.55797 -14.21770 -13.92216 -13.81541 -13.60406 -13.10797 -12.87849 -12.74724 -12.67163 -12.40106 -12.20904 -11.95991 -11.88601 -11.77053 -11.37974 -11.02980 -11.00523 -10.82324 -10.66361 -10.62222 -10.27792 -10.02249 -9.76506 -9.38769 -9.21524 -9.05625 -8.98226 -8.52056 -7.55797 -6.17735 -4.22326 1.34873 1.53484 1.93030 2.49487 2.68281 3.21932 3.29268 3.32407 3.33822 3.58918 3.94766 4.12771 4.17947 4.34484 4.65257 4.73455 4.78544 5.02451 5.05051 5.10333 5.16461 5.19310 5.20365 5.33232 5.43205 5.54427 5.71953 5.90231 5.93350 5.98295 6.11883 6.22286 6.25121 6.40906 6.45282 6.57595 6.64576 6.90322 7.38103 7.53967 7.60312 7.66886 7.79046 7.90548 8.15363 8.33856 8.73526 8.83167 9.42602 10.93795 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.002703 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.088948 B =10355.520659 C =12427.873330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.099 0.901 4 C -0.123 4.123 5 C 0.469 3.531 6 O -0.496 6.496 7 O -0.522 6.522 8 N -0.738 5.738 9 C 0.705 3.295 10 O -0.535 6.535 11 N -0.661 5.661 12 C 0.350 3.650 13 N -0.441 5.441 14 C 0.077 3.923 15 C -0.165 4.165 16 C -0.147 4.147 17 C 0.063 3.937 18 O -0.317 6.317 19 C 0.066 3.934 20 C 0.026 3.974 21 C -0.527 4.527 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.411 0.589 35 H 0.394 0.606 36 H 0.419 0.581 37 H 0.156 0.844 38 H 0.133 0.867 39 H 0.144 0.856 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 12.693 15.246 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.068 3.932 3 H 0.117 0.883 4 C -0.161 4.161 5 C 0.310 3.690 6 O -0.382 6.382 7 O -0.334 6.334 8 N -0.394 5.394 9 C 0.404 3.596 10 O -0.406 6.406 11 N -0.311 5.311 12 C 0.116 3.884 13 N -0.156 5.156 14 C -0.080 4.080 15 C -0.186 4.186 16 C -0.173 4.173 17 C 0.011 3.989 18 O -0.230 6.230 19 C -0.008 4.008 20 C -0.011 4.011 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.527 5.527 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.270 0.730 35 H 0.227 0.773 36 H 0.256 0.744 37 H 0.173 0.827 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.988 13.995 16.024 22.725 hybrid contribution 1.676 -1.871 -1.796 3.088 sum -6.313 12.123 14.228 19.730 Atomic orbital electron populations 1.22213 0.94176 1.02598 1.03287 1.20575 0.93874 0.97726 0.81053 0.88272 1.21777 0.88033 1.05147 1.01185 1.23434 0.91720 0.75295 0.78506 1.90838 1.70214 1.38970 1.38182 1.84511 1.27320 1.72880 1.48725 1.45056 1.72202 1.13402 1.08762 1.15805 0.78683 0.85215 0.79874 1.91008 1.53322 1.12984 1.83288 1.42478 1.67543 1.14114 1.06924 1.17490 0.98493 0.88762 0.83700 1.67633 1.16005 1.03847 1.28104 1.22408 0.98515 0.99796 0.87278 1.21869 1.01935 0.94846 0.99965 1.21572 1.03059 0.95257 0.97428 1.19542 0.99707 0.86111 0.93501 1.86096 1.79567 1.18246 1.39049 1.23374 0.97070 0.97078 0.83241 1.19125 0.98011 0.85725 0.98206 1.20994 1.45092 0.95089 0.95313 0.92282 1.24983 0.95366 0.97188 0.96609 1.69975 1.47759 1.08059 1.26939 0.86430 0.78514 0.79359 0.83088 1.19614 1.20813 1.20811 0.91032 0.92107 0.91362 0.85980 0.86924 0.72953 0.77277 0.74398 0.82716 0.84889 0.83818 0.92996 0.92977 0.95392 0.95392 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.87 16 2 C 0.17 1.56 2.14 -67.93 -0.15 1.41 16 3 H 0.10 1.16 7.39 -51.93 -0.38 0.78 16 4 C -0.12 -0.71 5.35 -27.88 -0.15 -0.86 16 5 C 0.47 4.08 8.19 36.00 0.29 4.38 16 6 O -0.50 -6.56 16.11 -18.75 -0.30 -6.86 16 7 O -0.52 -3.46 13.42 -39.25 -0.53 -3.99 16 8 N -0.74 -8.24 4.22 -58.68 -0.25 -8.48 16 9 C 0.70 11.03 8.50 -86.92 -0.74 10.30 16 10 O -0.53 -10.15 14.26 5.29 0.08 -10.08 16 11 N -0.66 -10.48 5.40 -15.67 -0.08 -10.56 16 12 C 0.35 6.17 7.45 -154.43 -1.15 5.02 16 13 N -0.44 -7.86 7.87 -12.22 -0.10 -7.96 16 14 C 0.08 1.11 11.17 -17.56 -0.20 0.91 16 15 C -0.16 -2.17 10.10 -39.44 -0.40 -2.57 16 16 C -0.15 -2.23 9.14 -39.17 -0.36 -2.59 16 17 C 0.06 1.10 6.72 -38.92 -0.26 0.84 16 18 O -0.32 -6.02 9.39 -19.69 -0.18 -6.21 16 19 C 0.07 1.34 4.70 37.16 0.17 1.51 16 20 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 21 C -0.53 -14.17 9.11 -34.44 -0.31 -14.48 16 22 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 23 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 25 Si 0.90 20.77 29.54 -169.99 -5.02 15.74 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.41 1.43 9.10 45.56 0.41 1.84 16 35 H 0.39 3.52 8.62 -40.82 -0.35 3.17 16 36 H 0.42 5.92 8.06 -40.82 -0.33 5.60 16 37 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.14 2.02 6.44 -52.49 -0.34 1.68 16 40 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 41 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -36.93 381.83 -8.17 -45.10 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.13 Total: 7.36 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -3.13 Total: 5.08 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.31 Total: -51.90 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.94 Total: -27.14 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.93 -8.17 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607417493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.231 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds