Wall clock time and date at job start Tue Mar 31 2020 21:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47139 * 2 1 4 4 C 1.53007 * 109.47139 * 119.99686 * 2 1 3 5 5 C 1.50697 * 109.47303 * 185.00385 * 4 2 1 6 6 O 1.20822 * 119.99770 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99964 * 180.02562 * 5 4 2 8 8 N 1.46496 * 109.47491 * 239.99625 * 2 1 3 9 9 C 1.34775 * 119.99986 * 85.00087 * 8 2 1 10 10 O 1.21589 * 120.00064 * 359.97438 * 9 8 2 11 11 N 1.34774 * 120.00006 * 180.02562 * 9 8 2 12 12 C 1.39594 * 119.99891 * 179.97438 * 11 9 8 13 13 N 1.32266 * 119.72727 * 0.26464 * 12 11 9 14 14 C 1.31963 * 121.69068 * 180.26509 * 13 12 11 15 15 C 1.38075 * 120.95403 * 359.72759 * 14 13 12 16 16 C 1.38794 * 119.35183 * 359.97438 * 15 14 13 17 17 C 1.38781 * 118.44752 * 359.97438 * 16 15 14 18 18 O 1.35983 * 120.49767 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99537 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46748 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99962 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99834 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00496 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47141 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47494 * 119.99680 * 25 23 21 28 28 H 1.48505 * 109.47047 * 239.99860 * 25 23 21 29 29 H 1.09001 * 109.46892 * 60.00799 * 1 2 3 30 30 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47321 * 300.00263 * 1 2 3 32 32 H 1.08998 * 109.46909 * 305.00179 * 4 2 1 33 33 H 1.08997 * 109.46832 * 64.99946 * 4 2 1 34 34 H 0.96703 * 117.00108 * 179.97438 * 7 5 4 35 35 H 0.97000 * 120.00232 * 265.00129 * 8 2 1 36 36 H 0.97000 * 120.00212 * 359.97438 * 11 9 8 37 37 H 1.08000 * 119.52770 * 179.74706 * 14 13 12 38 38 H 1.07997 * 120.32417 * 179.97438 * 15 14 13 39 39 H 1.07993 * 120.77636 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.47490 * 59.99651 * 19 18 17 41 41 H 1.09001 * 109.47232 * 299.99005 * 19 18 17 42 42 H 1.08993 * 109.46955 * 299.99993 * 20 19 18 43 43 H 1.09000 * 109.47050 * 59.99822 * 20 19 18 44 44 H 0.96992 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3129 6 8 4.1427 -0.0233 0.4475 7 8 4.2122 -1.1781 2.3303 8 7 2.0184 -0.6907 -1.1961 9 6 2.1472 -0.0184 -2.3570 10 8 1.8576 1.1612 -2.4119 11 7 2.5960 -0.6539 -3.4575 12 6 2.7289 0.0423 -4.6602 13 7 2.4177 1.3268 -4.7122 14 6 2.5237 2.0210 -5.8295 15 6 2.9720 1.4291 -6.9936 16 6 3.3158 0.0845 -6.9844 17 6 3.1955 -0.6206 -5.7951 18 8 3.5203 -1.9398 -5.7390 19 6 3.9831 -2.5459 -6.9476 20 6 4.2976 -4.0210 -6.6904 21 6 4.7850 -4.6603 -7.9651 22 1 4.8623 -4.0733 -8.8683 23 6 5.1312 -5.9948 -7.9784 24 7 5.0366 -6.7098 -6.8786 25 14 5.7361 -6.7871 -9.5582 26 1 5.7515 -5.7753 -10.6451 27 1 7.1089 -7.3151 -9.3532 28 1 4.8281 -7.9011 -9.9324 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7714 1.2057 34 1 5.1746 -1.0836 2.3278 35 1 2.2491 -1.6318 -1.1525 36 1 2.8268 -1.5950 -3.4139 37 1 2.2561 3.0673 -5.8334 38 1 3.0544 2.0068 -7.9023 39 1 3.6695 -0.4016 -7.8816 40 1 4.8847 -2.0364 -7.2875 41 1 3.2107 -2.4668 -7.7126 42 1 5.0700 -4.0998 -5.9255 43 1 3.3961 -4.5308 -6.3503 44 1 5.2805 -7.6485 -6.8879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607417493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:56 Heat of formation + Delta-G solvation = -144.414217 kcal Electronic energy + Delta-G solvation = -28637.206969 eV Core-core repulsion = 24361.346392 eV Total energy + Delta-G solvation = -4275.860577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.09944 -41.38215 -40.56326 -39.13655 -37.49869 -36.70812 -35.82016 -35.43556 -33.07809 -32.73495 -31.93802 -30.13595 -29.30411 -27.16586 -25.28215 -24.22150 -23.62564 -22.80145 -21.89502 -21.52154 -19.94468 -19.31231 -19.00040 -18.73950 -18.03551 -17.57049 -17.35625 -17.18606 -17.09761 -16.52314 -16.48279 -16.21228 -15.66547 -15.34468 -15.13681 -14.91840 -14.61337 -14.35810 -14.15229 -13.84839 -13.63114 -13.43460 -13.28303 -13.24375 -12.87018 -12.78414 -12.76664 -12.48813 -12.43611 -12.07385 -11.82888 -11.70463 -11.63392 -11.58563 -11.52944 -11.38401 -10.61822 -10.41989 -10.21822 -10.09230 -8.81072 -8.26131 -6.38525 0.16247 0.31359 1.26674 1.42085 1.42402 1.44316 1.55411 2.12219 2.13594 2.17046 2.44340 2.93136 2.95207 3.09189 3.53535 3.60283 3.87196 3.98602 4.09995 4.14544 4.21663 4.29403 4.34119 4.48652 4.51026 4.60009 4.67528 4.74529 4.84194 4.93964 5.03493 5.14865 5.28729 5.31654 5.35632 5.49876 5.51638 5.54699 5.66996 5.71586 5.83419 6.07939 6.35628 6.72662 6.76393 7.01891 7.17920 7.31507 7.57394 8.86784 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.002703 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.088948 B =10355.520659 C =12427.873330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.066 0.934 4 C -0.113 4.113 5 C 0.472 3.528 6 O -0.551 6.551 7 O -0.515 6.515 8 N -0.724 5.724 9 C 0.698 3.302 10 O -0.574 6.574 11 N -0.663 5.663 12 C 0.329 3.671 13 N -0.473 5.473 14 C 0.074 3.926 15 C -0.148 4.148 16 C -0.146 4.146 17 C 0.038 3.962 18 O -0.330 6.330 19 C 0.083 3.917 20 C 0.030 3.970 21 C -0.543 4.543 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.929 5.929 25 Si 0.971 3.029 26 H -0.258 1.258 27 H -0.279 1.279 28 H -0.278 1.278 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.142 0.858 34 H 0.424 0.576 35 H 0.405 0.595 36 H 0.422 0.578 37 H 0.185 0.815 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.000 1.000 43 H 0.002 0.998 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 13.063 14.620 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.064 3.936 3 H 0.084 0.916 4 C -0.150 4.150 5 C 0.316 3.684 6 O -0.442 6.442 7 O -0.328 6.328 8 N -0.381 5.381 9 C 0.398 3.602 10 O -0.449 6.449 11 N -0.313 5.313 12 C 0.096 3.904 13 N -0.188 5.188 14 C -0.083 4.083 15 C -0.169 4.169 16 C -0.173 4.173 17 C -0.013 4.013 18 O -0.243 6.243 19 C 0.009 3.991 20 C -0.007 4.007 21 C -0.581 4.581 22 H 0.089 0.911 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.795 3.205 26 H -0.182 1.182 27 H -0.205 1.205 28 H -0.204 1.204 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.176 0.824 33 H 0.160 0.840 34 H 0.285 0.715 35 H 0.240 0.760 36 H 0.260 0.740 37 H 0.202 0.798 38 H 0.194 0.806 39 H 0.175 0.825 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.404 14.336 15.453 22.692 hybrid contribution 1.794 -1.884 -1.512 3.009 sum -6.609 12.452 13.941 19.826 Atomic orbital electron populations 1.22136 0.92644 1.03626 1.02967 1.20733 0.94979 0.96441 0.81492 0.91568 1.21845 0.85946 1.06741 1.00506 1.23999 0.92835 0.73867 0.77701 1.90834 1.71493 1.41557 1.40290 1.84488 1.28590 1.72070 1.47679 1.45077 1.71050 1.13845 1.08098 1.16057 0.78452 0.85006 0.80674 1.90958 1.55195 1.14678 1.84038 1.42536 1.67563 1.14240 1.06954 1.17710 0.99235 0.89117 0.84312 1.67679 1.17068 1.04123 1.29976 1.23063 0.97324 1.00994 0.86905 1.22265 0.99567 0.94049 1.01006 1.21884 1.02315 0.96177 0.96906 1.19685 1.01592 0.85407 0.94648 1.86025 1.80314 1.19627 1.38378 1.22956 0.98015 0.94261 0.83867 1.18943 0.95838 0.88976 0.96932 1.21428 1.44813 0.95665 0.96219 0.91119 1.25964 0.95472 0.97942 1.00130 1.70107 1.48877 1.08503 1.29347 0.85305 0.77804 0.78439 0.78931 1.18170 1.20480 1.20386 0.94398 0.90320 0.88607 0.82414 0.83982 0.71460 0.75972 0.74003 0.79786 0.80619 0.82459 0.91940 0.91709 0.98164 0.97952 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.48 71.98 0.68 -1.49 16 2 C 0.17 3.00 2.14 44.99 0.10 3.09 16 3 H 0.07 1.65 7.39 -2.39 -0.02 1.63 16 4 C -0.11 -1.07 5.35 29.85 0.16 -0.91 16 5 C 0.47 7.88 8.19 71.23 0.58 8.46 16 6 O -0.55 -15.13 16.11 21.98 0.35 -14.78 16 7 O -0.51 -6.10 13.42 -51.40 -0.69 -6.79 16 8 N -0.72 -16.72 4.22 -457.82 -1.93 -18.65 16 9 C 0.70 23.09 8.50 179.06 1.52 24.61 16 10 O -0.57 -23.04 14.26 -4.00 -0.06 -23.10 16 11 N -0.66 -22.19 5.40 -321.76 -1.74 -23.93 16 12 C 0.33 11.97 7.45 132.98 0.99 12.96 16 13 N -0.47 -17.06 7.87 -192.58 -1.52 -18.58 16 14 C 0.07 2.02 11.17 84.63 0.95 2.97 16 15 C -0.15 -3.49 10.10 22.36 0.23 -3.26 16 16 C -0.15 -4.22 9.14 22.53 0.21 -4.01 16 17 C 0.04 1.32 6.72 22.70 0.15 1.48 16 18 O -0.33 -12.85 9.39 -93.36 -0.88 -13.73 16 19 C 0.08 3.36 4.70 71.98 0.34 3.70 16 20 C 0.03 1.56 5.34 29.85 0.16 1.72 16 21 C -0.54 -29.31 9.11 25.60 0.23 -29.08 16 22 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 23 C 0.00 0.20 5.46 84.65 0.46 0.66 16 24 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 25 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.42 2.60 9.10 -74.05 -0.67 1.92 16 35 H 0.40 7.35 8.62 -92.71 -0.80 6.55 16 36 H 0.42 12.80 8.06 -92.71 -0.75 12.05 16 37 H 0.19 3.77 8.06 -2.91 -0.02 3.74 16 38 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.16 4.05 6.44 -2.91 -0.02 4.03 16 40 H 0.06 2.36 7.70 -2.39 -0.02 2.35 16 41 H 0.06 2.43 7.70 -2.39 -0.02 2.41 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 44 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -84.25 381.83 1.46 -82.78 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -1.15 Total: 25.89 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.76 Total: 20.88 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -4.90 Total: -115.43 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -1.27 Total: -58.40 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -84.25 1.46 -82.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607417493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.632 kcal (2) G-P(sol) polarization free energy of solvation -84.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds