Wall clock time and date at job start Tue Mar 31 2020 22:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47373 * 2 1 4 4 C 1.35972 * 117.00128 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.98378 * 359.72602 * 4 3 2 6 6 C 1.38061 * 120.01610 * 179.76323 * 5 4 3 7 7 C 1.38872 * 119.98413 * 0.53801 * 6 5 4 8 8 N 1.40108 * 120.01438 * 179.74466 * 7 6 5 9 9 C 1.34776 * 120.00228 * 34.96865 * 8 7 6 10 10 O 1.21294 * 120.00064 * 5.26583 * 9 8 7 11 11 C 1.50697 * 119.99885 * 185.26718 * 9 8 7 12 12 N 1.46906 * 109.47159 * 180.02562 * 11 9 8 13 13 C 1.46903 * 111.00151 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.46678 * 324.99937 * 13 12 11 15 15 C 1.53003 * 109.47269 * 84.99663 * 13 12 11 16 16 C 1.50700 * 109.47034 * 204.99847 * 13 12 11 17 17 H 1.08002 * 119.99808 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99908 * 179.97438 * 16 13 12 19 19 N 1.31508 * 119.99948 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99695 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47253 * 60.00418 * 20 18 16 22 22 H 1.48505 * 109.46767 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47426 * 299.99921 * 20 18 16 24 24 C 1.38828 * 119.97034 * 359.71651 * 7 6 5 25 25 N 1.48016 * 120.00936 * 180.02562 * 24 7 6 26 26 O 1.21792 * 120.00145 * 175.03072 * 25 24 7 27 27 O 1.21800 * 119.99634 * 355.02659 * 25 24 7 28 28 C 1.38111 * 119.98345 * 0.02562 * 24 7 6 29 29 H 1.09004 * 109.47030 * 299.99876 * 1 2 3 30 30 H 1.09001 * 109.47446 * 59.99246 * 1 2 3 31 31 H 1.08998 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46542 * 239.99941 * 2 1 3 33 33 H 1.08998 * 109.47032 * 120.01074 * 2 1 3 34 34 H 1.08006 * 119.99028 * 0.02562 * 5 4 3 35 35 H 1.07996 * 120.01181 * 180.23595 * 6 5 4 36 36 H 0.96998 * 119.99829 * 214.96959 * 8 7 6 37 37 H 1.09003 * 109.47138 * 299.99858 * 11 9 8 38 38 H 1.09000 * 109.47124 * 60.00014 * 11 9 8 39 39 H 1.00902 * 110.99695 * 303.95169 * 12 11 9 40 40 H 1.08998 * 109.46614 * 300.00402 * 15 13 12 41 41 H 1.09001 * 109.46541 * 59.99923 * 15 13 12 42 42 H 1.08997 * 109.47125 * 179.97438 * 15 13 12 43 43 H 0.96999 * 119.99984 * 180.02562 * 19 18 16 44 44 H 1.07999 * 119.99307 * 179.97438 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 4.1992 0.4247 0.0047 6 6 5.5680 0.6048 -0.0008 7 6 6.0993 1.8879 -0.0003 8 7 7.4883 2.0713 -0.0004 9 6 8.2815 1.2117 -0.6699 10 8 7.7893 0.3363 -1.3501 11 6 9.7801 1.3381 -0.5735 12 7 10.4132 0.2924 -1.3883 13 6 11.8776 0.3845 -1.3178 14 1 12.1729 1.4315 -1.2498 15 6 12.3770 -0.3675 -0.0824 16 6 12.4796 -0.2280 -2.5561 17 1 11.8384 -0.6436 -3.3194 18 6 13.8489 -0.2567 -2.7152 19 7 14.6295 0.2498 -1.7860 20 14 14.5950 -1.0165 -4.2499 21 1 14.1098 -0.2875 -5.4492 22 1 16.0754 -0.9223 -4.1792 23 1 14.1932 -2.4431 -4.3415 24 6 5.2534 2.9887 -0.0002 25 7 5.8187 4.3567 -0.0001 26 8 5.0801 5.3208 -0.0914 27 8 7.0224 4.5181 0.0912 28 6 3.8843 2.8071 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 3.7859 -0.5731 0.0088 35 1 6.2256 -0.2519 -0.0006 36 1 7.8790 2.8171 0.4813 37 1 10.0863 2.3183 -0.9391 38 1 10.0881 1.2256 0.4660 39 1 10.0950 -0.6241 -1.1110 40 1 11.9415 0.0755 0.8132 41 1 12.0816 -1.4145 -0.1504 42 1 13.4637 -0.2996 -0.0304 43 1 15.5928 0.2299 -1.8980 44 1 3.2261 3.6633 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001619199020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:35 Heat of formation + Delta-G solvation = -36.211564 kcal Electronic energy + Delta-G solvation = -28570.069912 eV Core-core repulsion = 24298.901353 eV Total energy + Delta-G solvation = -4271.168558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.53540 -40.95551 -40.00156 -38.00918 -36.86485 -35.83350 -34.69690 -32.62612 -32.39100 -32.19103 -29.97565 -28.81496 -26.90893 -25.48128 -25.01222 -24.28994 -23.37077 -22.20575 -20.62839 -20.25249 -19.81229 -18.93541 -18.11073 -17.78075 -17.58840 -17.27908 -16.69601 -16.48397 -15.95027 -15.43294 -14.85055 -14.70958 -14.61693 -14.10142 -14.01842 -13.74717 -13.50053 -13.14614 -13.11844 -12.80907 -12.72037 -12.62229 -11.77748 -11.75261 -11.72503 -11.65891 -11.54483 -11.36076 -11.30735 -10.93969 -10.85473 -10.60641 -10.36016 -10.19685 -10.14170 -9.98937 -9.75019 -9.06369 -8.39628 -8.38020 -7.37090 -6.00912 -4.03855 -0.47161 0.60632 1.03177 1.08680 2.47410 2.51596 2.71749 3.00669 3.35260 3.38675 3.42944 3.97578 4.14906 4.20955 4.35167 4.38603 4.43376 4.57027 4.66044 4.67338 4.93873 5.08598 5.20551 5.22950 5.23459 5.31121 5.40154 5.48313 5.53245 5.64367 5.69142 5.79466 6.09331 6.20309 6.59270 6.69320 6.76025 6.98730 7.07323 7.26068 7.42699 7.67950 7.83614 8.00759 8.19313 8.42930 8.52580 9.03122 9.61377 11.06284 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.002288 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.850166 B =12234.115000 C =13355.619556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.308 6.308 4 C 0.113 3.887 5 C -0.131 4.131 6 C -0.086 4.086 7 C 0.202 3.798 8 N -0.675 5.675 9 C 0.517 3.483 10 O -0.501 6.501 11 C 0.045 3.955 12 N -0.667 5.667 13 C 0.212 3.788 14 H 0.037 0.963 15 C -0.171 4.171 16 C -0.495 4.495 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.044 4.044 25 N 0.041 4.959 26 O -0.150 6.150 27 O -0.170 6.170 28 C -0.076 4.076 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.426 0.574 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.335 0.665 40 H 0.005 0.995 41 H 0.029 0.971 42 H 0.092 0.908 43 H 0.261 0.739 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.236 1.164 9.089 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.222 6.222 4 C 0.066 3.934 5 C -0.151 4.151 6 C -0.107 4.107 7 C 0.103 3.897 8 N -0.329 5.329 9 C 0.306 3.694 10 O -0.373 6.373 11 C -0.088 4.088 12 N -0.299 5.299 13 C 0.105 3.895 14 H 0.055 0.945 15 C -0.230 4.230 16 C -0.534 4.534 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.132 4.132 25 N 0.557 4.443 26 O -0.368 6.368 27 O -0.379 6.379 28 C -0.096 4.096 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.167 0.833 35 H 0.180 0.820 36 H 0.270 0.730 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.024 0.976 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.677 0.406 8.040 27.865 hybrid contribution 1.034 -0.179 0.360 1.110 sum -25.642 0.227 8.400 26.984 Atomic orbital electron populations 1.21783 0.92200 1.03194 1.03778 1.22929 0.96385 0.81235 1.01876 1.86108 1.17409 1.30022 1.88685 1.18411 0.83495 0.92376 0.99160 1.21617 0.93451 0.99279 1.00731 1.21096 0.95082 0.95787 0.98745 1.17470 0.84310 0.91668 0.96286 1.44452 1.02877 1.32961 1.52602 1.21576 0.90474 0.80141 0.77214 1.90696 1.76052 1.33412 1.37128 1.21834 0.87526 1.01004 0.98397 1.60638 1.09830 1.04914 1.54506 1.19248 0.79672 0.96715 0.93879 0.94490 1.22465 1.05538 0.98491 0.96534 1.21079 0.90932 1.37796 1.03609 0.91828 1.24942 0.97132 0.95725 0.96737 1.69859 1.04122 1.46227 1.33530 0.86525 0.77613 0.79693 0.83341 1.20252 1.21460 1.20357 1.20524 0.93360 0.80885 1.18382 1.43327 1.00752 1.02683 0.97522 1.94543 1.58102 1.31449 1.52743 1.94395 0.97651 1.91623 1.54238 1.19802 0.91753 0.97507 1.00521 0.91350 0.91281 0.90030 0.91465 0.91577 0.83261 0.82048 0.73021 0.87738 0.92508 0.84733 0.97613 0.95165 0.88964 0.92950 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 10.28 37.16 0.38 -0.17 16 2 C 0.05 0.25 5.46 37.16 0.20 0.45 16 3 O -0.31 -2.45 10.14 -19.65 -0.20 -2.65 16 4 C 0.11 1.00 6.69 -39.22 -0.26 0.74 16 5 C -0.13 -1.09 9.03 -39.46 -0.36 -1.44 16 6 C -0.09 -0.92 8.65 -39.41 -0.34 -1.26 16 7 C 0.20 2.46 6.24 -83.62 -0.52 1.94 16 8 N -0.68 -8.64 4.69 -9.83 -0.05 -8.69 16 9 C 0.52 8.00 7.59 -10.99 -0.08 7.91 16 10 O -0.50 -9.04 14.00 5.55 0.08 -8.96 16 11 C 0.05 0.75 5.97 -4.97 -0.03 0.72 16 12 N -0.67 -14.04 5.86 -109.21 -0.64 -14.67 16 13 C 0.21 5.17 2.57 -68.86 -0.18 4.99 16 14 H 0.04 0.97 7.80 -51.93 -0.40 0.57 16 15 C -0.17 -3.94 8.94 37.16 0.33 -3.60 16 16 C -0.50 -13.63 8.84 -34.44 -0.30 -13.93 16 17 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 18 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 19 N -0.90 -25.26 11.32 55.43 0.63 -24.63 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.04 -0.52 6.86 -79.78 -0.55 -1.07 16 25 N 0.04 0.54 4.45 34.05 0.15 0.69 16 26 O -0.15 -2.04 18.46 -29.46 -0.54 -2.58 16 27 O -0.17 -2.36 15.94 -29.46 -0.47 -2.83 16 28 C -0.08 -0.75 9.49 -39.46 -0.37 -1.13 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.28 7.67 -51.93 -0.40 -0.12 16 33 H 0.07 0.24 7.65 -51.93 -0.40 -0.16 16 34 H 0.15 0.81 6.29 -52.48 -0.33 0.48 16 35 H 0.16 1.81 6.54 -52.49 -0.34 1.47 16 36 H 0.43 4.90 6.25 -40.82 -0.26 4.64 16 37 H 0.10 1.69 8.06 -51.93 -0.42 1.27 16 38 H 0.06 0.84 7.44 -51.93 -0.39 0.46 16 39 H 0.33 6.90 8.17 -39.29 -0.32 6.58 16 40 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 41 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 42 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.16 1.42 7.62 -52.49 -0.40 1.02 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -31.51 373.31 -8.20 -39.71 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.59 Total: 6.92 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.18 Total: -4.44 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.09 Total: -47.30 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.13 Total: -17.02 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.51 -8.20 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001619199020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.502 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds