Wall clock time and date at job start Tue Mar 31 2020 22:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47373 * 2 1 4 4 C 1.35972 * 117.00128 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.98378 * 359.72602 * 4 3 2 6 6 C 1.38061 * 120.01610 * 179.76323 * 5 4 3 7 7 C 1.38872 * 119.98413 * 0.53801 * 6 5 4 8 8 N 1.40108 * 120.01438 * 179.74466 * 7 6 5 9 9 C 1.34776 * 120.00228 * 34.96865 * 8 7 6 10 10 O 1.21294 * 120.00064 * 5.26583 * 9 8 7 11 11 C 1.50697 * 119.99885 * 185.26718 * 9 8 7 12 12 N 1.46906 * 109.47159 * 180.02562 * 11 9 8 13 13 C 1.46903 * 111.00151 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.46678 * 324.99937 * 13 12 11 15 15 C 1.53003 * 109.47269 * 84.99663 * 13 12 11 16 16 C 1.50700 * 109.47034 * 204.99847 * 13 12 11 17 17 H 1.08002 * 119.99808 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99908 * 179.97438 * 16 13 12 19 19 N 1.31508 * 119.99948 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99695 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47253 * 60.00418 * 20 18 16 22 22 H 1.48505 * 109.46767 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47426 * 299.99921 * 20 18 16 24 24 C 1.38828 * 119.97034 * 359.71651 * 7 6 5 25 25 N 1.48016 * 120.00936 * 180.02562 * 24 7 6 26 26 O 1.21792 * 120.00145 * 175.03072 * 25 24 7 27 27 O 1.21800 * 119.99634 * 355.02659 * 25 24 7 28 28 C 1.38111 * 119.98345 * 0.02562 * 24 7 6 29 29 H 1.09004 * 109.47030 * 299.99876 * 1 2 3 30 30 H 1.09001 * 109.47446 * 59.99246 * 1 2 3 31 31 H 1.08998 * 109.47343 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46542 * 239.99941 * 2 1 3 33 33 H 1.08998 * 109.47032 * 120.01074 * 2 1 3 34 34 H 1.08006 * 119.99028 * 0.02562 * 5 4 3 35 35 H 1.07996 * 120.01181 * 180.23595 * 6 5 4 36 36 H 0.96998 * 119.99829 * 214.96959 * 8 7 6 37 37 H 1.09003 * 109.47138 * 299.99858 * 11 9 8 38 38 H 1.09000 * 109.47124 * 60.00014 * 11 9 8 39 39 H 1.00902 * 110.99695 * 303.95169 * 12 11 9 40 40 H 1.08998 * 109.46614 * 300.00402 * 15 13 12 41 41 H 1.09001 * 109.46541 * 59.99923 * 15 13 12 42 42 H 1.08997 * 109.47125 * 179.97438 * 15 13 12 43 43 H 0.96999 * 119.99984 * 180.02562 * 19 18 16 44 44 H 1.07999 * 119.99307 * 179.97438 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 4.1992 0.4247 0.0047 6 6 5.5680 0.6048 -0.0008 7 6 6.0993 1.8879 -0.0003 8 7 7.4883 2.0713 -0.0004 9 6 8.2815 1.2117 -0.6699 10 8 7.7893 0.3363 -1.3501 11 6 9.7801 1.3381 -0.5735 12 7 10.4132 0.2924 -1.3883 13 6 11.8776 0.3845 -1.3178 14 1 12.1729 1.4315 -1.2498 15 6 12.3770 -0.3675 -0.0824 16 6 12.4796 -0.2280 -2.5561 17 1 11.8384 -0.6436 -3.3194 18 6 13.8489 -0.2567 -2.7152 19 7 14.6295 0.2498 -1.7860 20 14 14.5950 -1.0165 -4.2499 21 1 14.1098 -0.2875 -5.4492 22 1 16.0754 -0.9223 -4.1792 23 1 14.1932 -2.4431 -4.3415 24 6 5.2534 2.9887 -0.0002 25 7 5.8187 4.3567 -0.0001 26 8 5.0801 5.3208 -0.0914 27 8 7.0224 4.5181 0.0912 28 6 3.8843 2.8071 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 3.7859 -0.5731 0.0088 35 1 6.2256 -0.2519 -0.0006 36 1 7.8790 2.8171 0.4813 37 1 10.0863 2.3183 -0.9391 38 1 10.0881 1.2256 0.4660 39 1 10.0950 -0.6241 -1.1110 40 1 11.9415 0.0755 0.8132 41 1 12.0816 -1.4145 -0.1504 42 1 13.4637 -0.2996 -0.0304 43 1 15.5928 0.2299 -1.8980 44 1 3.2261 3.6633 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001619199020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:34 Heat of formation + Delta-G solvation = -56.456639 kcal Electronic energy + Delta-G solvation = -28570.947804 eV Core-core repulsion = 24298.901353 eV Total energy + Delta-G solvation = -4272.046451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.52143 -41.86378 -40.93156 -38.89928 -37.89276 -37.52673 -35.72295 -34.49104 -33.19023 -32.75872 -31.30991 -30.02967 -27.91607 -27.25143 -26.62220 -24.90432 -24.26632 -22.95947 -22.18338 -21.69725 -20.63759 -19.93826 -19.14608 -18.77566 -18.62470 -18.28469 -17.96192 -17.26071 -17.14365 -16.64327 -16.56217 -16.04413 -15.41388 -15.22923 -15.05361 -14.88317 -14.50587 -14.44832 -14.20189 -13.55528 -13.54386 -13.49888 -13.32555 -13.18220 -12.85228 -12.81687 -12.74489 -12.47188 -12.42976 -12.41913 -12.18536 -12.14904 -11.95699 -11.93575 -11.34005 -11.16567 -10.97467 -10.74685 -10.46848 -9.24449 -9.02900 -8.09358 -6.19342 -1.40273 -0.20970 0.10541 0.16385 1.32758 1.44353 1.45755 1.53210 1.61043 2.00185 2.15659 2.45357 3.13960 3.19327 3.36434 3.47337 3.63626 3.70864 3.71795 4.05074 4.06284 4.12957 4.35125 4.36289 4.38793 4.43839 4.60244 4.73189 4.76203 4.82174 4.89433 4.90743 4.95671 5.06804 5.07576 5.25074 5.29046 5.37851 5.70640 5.80636 6.05826 6.10645 6.26799 6.37450 6.59073 6.71368 6.86946 6.93546 7.49800 8.95776 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.002288 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.850166 B =12234.115000 C =13355.619556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.038 3.962 3 O -0.316 6.316 4 C 0.124 3.876 5 C -0.114 4.114 6 C -0.092 4.092 7 C 0.179 3.821 8 N -0.665 5.665 9 C 0.526 3.474 10 O -0.530 6.530 11 C 0.045 3.955 12 N -0.679 5.679 13 C 0.217 3.783 14 H 0.014 0.986 15 C -0.158 4.158 16 C -0.517 4.517 17 H 0.050 0.950 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.050 4.050 25 N 0.040 4.960 26 O -0.157 6.157 27 O -0.190 6.190 28 C -0.078 4.078 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.157 0.843 36 H 0.431 0.569 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.337 0.663 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.262 0.738 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.185 0.070 9.443 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.036 4.036 3 O -0.230 6.230 4 C 0.076 3.924 5 C -0.133 4.133 6 C -0.112 4.112 7 C 0.080 3.920 8 N -0.318 5.318 9 C 0.316 3.684 10 O -0.405 6.405 11 C -0.088 4.088 12 N -0.310 5.310 13 C 0.109 3.891 14 H 0.032 0.968 15 C -0.218 4.218 16 C -0.556 4.556 17 H 0.068 0.932 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.137 4.137 25 N 0.554 4.446 26 O -0.375 6.375 27 O -0.395 6.395 28 C -0.098 4.098 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.201 0.799 35 H 0.175 0.825 36 H 0.276 0.724 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.155 0.845 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -28.645 -0.658 8.420 29.864 hybrid contribution 1.416 0.146 0.293 1.454 sum -27.229 -0.512 8.712 28.593 Atomic orbital electron populations 1.21821 0.91366 1.04337 1.03344 1.23288 0.97143 0.79903 1.03264 1.86134 1.16494 1.32204 1.88194 1.18434 0.84219 0.91963 0.97746 1.21918 0.92258 1.00748 0.98410 1.21149 0.96131 0.94909 0.99043 1.17650 0.83695 0.92466 0.98148 1.44170 1.03351 1.32320 1.52008 1.21175 0.90027 0.80142 0.77097 1.90683 1.76358 1.34810 1.38629 1.21837 0.88343 0.99567 0.99004 1.60420 1.08080 1.06090 1.56430 1.19001 0.81673 0.95073 0.93369 0.96763 1.22261 1.03697 0.98607 0.97212 1.21374 0.91360 1.38207 1.04644 0.93197 1.25651 0.97551 0.96161 0.99386 1.69971 1.04235 1.46805 1.34795 0.85611 0.76982 0.78993 0.79984 1.20243 1.20807 1.19802 1.20574 0.94011 0.79686 1.19454 1.43557 1.00634 1.03299 0.97154 1.94524 1.57987 1.32158 1.52856 1.94382 0.98086 1.91955 1.55089 1.19980 0.91062 0.98644 1.00143 0.91615 0.91917 0.88099 0.90379 0.89796 0.79939 0.82526 0.72439 0.87619 0.90186 0.84512 0.94737 0.95071 0.91682 0.92913 0.81001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 71.98 0.74 0.04 16 2 C 0.04 0.25 5.46 71.98 0.39 0.64 16 3 O -0.32 -4.17 10.14 -93.24 -0.95 -5.11 16 4 C 0.12 1.89 6.69 22.50 0.15 2.04 16 5 C -0.11 -1.57 9.03 22.35 0.20 -1.37 16 6 C -0.09 -1.82 8.65 22.38 0.19 -1.62 16 7 C 0.18 4.21 6.24 38.11 0.24 4.45 16 8 N -0.66 -16.75 4.69 -303.39 -1.42 -18.17 16 9 C 0.53 16.08 7.59 87.66 0.67 16.75 16 10 O -0.53 -18.97 14.00 -3.07 -0.04 -19.02 16 11 C 0.04 1.46 5.97 85.55 0.51 1.98 16 12 N -0.68 -28.58 5.86 -499.44 -2.93 -31.50 16 13 C 0.22 10.68 2.57 44.17 0.11 10.79 16 14 H 0.01 0.77 7.80 -2.39 -0.02 0.75 16 15 C -0.16 -7.24 8.94 71.98 0.64 -6.60 16 16 C -0.52 -28.80 8.84 25.60 0.23 -28.57 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 18 C 0.01 0.61 5.30 84.66 0.45 1.06 16 19 N -0.92 -52.05 11.32 21.45 0.24 -51.81 16 20 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 C -0.05 -1.15 6.86 36.49 0.25 -0.90 16 25 N 0.04 1.07 4.45 -46.20 -0.21 0.86 16 26 O -0.16 -4.23 18.46 18.90 0.35 -3.88 16 27 O -0.19 -5.30 15.94 18.89 0.30 -5.00 16 28 C -0.08 -1.44 9.49 22.35 0.21 -1.23 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.08 0.37 7.67 -2.38 -0.02 0.35 16 33 H 0.08 0.28 7.65 -2.39 -0.02 0.26 16 34 H 0.18 1.23 6.29 -2.91 -0.02 1.21 16 35 H 0.16 3.33 6.54 -2.91 -0.02 3.31 16 36 H 0.43 9.82 6.25 -92.71 -0.58 9.24 16 37 H 0.11 3.43 8.06 -2.39 -0.02 3.41 16 38 H 0.08 2.26 7.44 -2.39 -0.02 2.24 16 39 H 0.34 13.83 8.17 -89.69 -0.73 13.10 16 40 H 0.03 1.33 7.45 -2.39 -0.02 1.31 16 41 H 0.03 1.37 8.13 -2.39 -0.02 1.35 16 42 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 43 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 44 H 0.17 2.78 7.62 -2.91 -0.02 2.75 16 Total: -1.00 -67.92 373.31 2.12 -65.81 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.25 Total: 24.11 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.99 Total: -2.55 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.31 Total: -100.62 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.34 Total: -33.01 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.92 2.12 -65.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001619199020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.349 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds