Wall clock time and date at job start Tue Mar 31 2020 22:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46722 * 2 1 4 4 C 1.35972 * 116.99255 * 180.02562 * 3 2 1 5 5 C 1.38744 * 119.98926 * 0.02562 * 4 3 2 6 6 C 1.38068 * 120.01354 * 179.97438 * 5 4 3 7 7 C 1.38861 * 119.98602 * 0.02562 * 6 5 4 8 8 N 1.40120 * 120.01696 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99555 * 35.28168 * 8 7 6 10 10 O 1.21294 * 120.00229 * 355.55995 * 9 8 7 11 11 C 1.50702 * 119.99432 * 175.55859 * 9 8 7 12 12 N 1.46908 * 109.46654 * 180.02562 * 11 9 8 13 13 C 1.46896 * 110.99486 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47300 * 35.00117 * 13 12 11 15 15 C 1.53001 * 109.47057 * 274.99539 * 13 12 11 16 16 C 1.50711 * 109.46911 * 155.00171 * 13 12 11 17 17 H 1.08000 * 119.99656 * 359.97438 * 16 13 12 18 18 C 1.37870 * 120.00038 * 179.97438 * 16 13 12 19 19 N 1.31520 * 120.00083 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00084 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47247 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46954 * 299.99919 * 20 18 16 23 23 H 1.48499 * 109.46867 * 59.99977 * 20 18 16 24 24 C 1.38827 * 119.97342 * 0.25140 * 7 6 5 25 25 N 1.48012 * 120.00875 * 179.73048 * 24 7 6 26 26 O 1.21805 * 119.99825 * 185.43190 * 25 24 7 27 27 O 1.21797 * 120.00220 * 5.42819 * 25 24 7 28 28 C 1.38114 * 119.98368 * 359.51311 * 24 7 6 29 29 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47459 * 300.00248 * 1 2 3 31 31 H 1.09002 * 109.47096 * 59.99758 * 1 2 3 32 32 H 1.08995 * 109.47107 * 240.00173 * 2 1 3 33 33 H 1.08999 * 109.47180 * 119.99728 * 2 1 3 34 34 H 1.07993 * 119.99116 * 359.97438 * 5 4 3 35 35 H 1.08002 * 120.00530 * 179.97438 * 6 5 4 36 36 H 0.96998 * 119.99801 * 215.29227 * 8 7 6 37 37 H 1.08991 * 109.47161 * 60.00534 * 11 9 8 38 38 H 1.08998 * 109.47250 * 300.00198 * 11 9 8 39 39 H 1.00899 * 110.99425 * 303.95016 * 12 11 9 40 40 H 1.08997 * 109.47195 * 60.00882 * 15 13 12 41 41 H 1.09007 * 109.46948 * 180.02562 * 15 13 12 42 42 H 1.08993 * 109.47237 * 300.00424 * 15 13 12 43 43 H 0.96998 * 119.99779 * 180.02562 * 19 18 16 44 44 H 1.07997 * 119.99155 * 180.21390 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 4.1992 0.4249 -0.0016 6 6 5.5680 0.6051 -0.0027 7 6 6.0991 1.8882 -0.0022 8 7 7.4882 2.0718 -0.0027 9 6 8.2808 1.2159 -0.6778 10 8 7.8003 0.2417 -1.2176 11 6 9.7639 1.4694 -0.7620 12 7 10.3993 0.4019 -1.5463 13 6 11.8489 0.6161 -1.6492 14 1 12.2176 1.0578 -0.7234 15 6 12.1434 1.5594 -2.8172 16 6 12.5363 -0.7044 -1.8845 17 1 11.9543 -1.6118 -1.9504 18 6 13.9078 -0.7539 -2.0154 19 7 14.6164 0.3513 -1.9356 20 14 14.7599 -2.3906 -2.3063 21 1 16.2252 -2.1741 -2.4117 22 1 14.4746 -3.3056 -1.1720 23 1 14.2571 -2.9932 -3.5670 24 6 5.2532 2.9889 0.0047 25 7 5.8184 4.3569 0.0113 26 8 5.0805 5.3202 0.1171 27 8 7.0213 4.5193 -0.0891 28 6 3.8840 2.8073 0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7860 -0.5729 -0.0016 35 1 6.2256 -0.2516 -0.0031 36 1 7.8793 2.8149 0.4829 37 1 10.1875 1.4842 0.2421 38 1 9.9415 2.4300 -1.2456 39 1 10.1949 -0.5051 -1.1544 40 1 11.6464 2.5145 -2.6471 41 1 13.2192 1.7180 -2.8939 42 1 11.7747 1.1177 -3.7429 43 1 15.5813 0.3164 -2.0281 44 1 3.2259 3.6636 0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001619199021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:43 Heat of formation + Delta-G solvation = -36.695206 kcal Electronic energy + Delta-G solvation = -28585.884856 eV Core-core repulsion = 24314.695325 eV Total energy + Delta-G solvation = -4271.189531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52251 -40.94914 -39.99692 -37.98881 -36.84195 -35.72747 -34.69666 -32.65216 -32.37791 -32.17858 -29.94910 -28.80861 -26.92233 -25.71970 -24.90693 -24.27216 -23.37767 -22.17136 -20.65700 -19.84321 -19.79249 -18.92061 -18.18150 -17.70337 -17.56697 -17.31396 -16.69261 -16.54744 -16.03238 -15.41508 -14.83149 -14.71661 -14.59568 -14.11129 -14.03044 -13.76160 -13.40996 -13.25816 -13.13720 -12.85074 -12.73037 -12.55056 -11.91832 -11.76290 -11.72512 -11.54324 -11.36302 -11.34473 -11.27083 -10.94716 -10.81030 -10.42687 -10.32687 -10.18028 -10.14096 -10.03204 -9.69408 -8.89873 -8.51482 -8.39520 -7.41002 -6.06524 -4.13138 -0.46498 0.62613 1.03596 1.09889 2.46656 2.53135 2.72617 3.01454 3.29713 3.34252 3.37396 3.99816 4.16245 4.22752 4.35841 4.37166 4.40553 4.58480 4.66962 4.68889 4.94597 5.08861 5.21055 5.22366 5.23968 5.29143 5.42877 5.49502 5.54628 5.68114 5.73928 5.82061 6.08228 6.22284 6.70247 6.79568 7.06469 7.07765 7.17558 7.40360 7.43426 7.73491 7.81703 8.02199 8.21420 8.27774 8.56055 8.95473 9.52776 10.99771 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002324 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.796731 B =12045.823963 C =13584.935715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.309 6.309 4 C 0.113 3.887 5 C -0.133 4.133 6 C -0.087 4.087 7 C 0.199 3.801 8 N -0.673 5.673 9 C 0.519 3.481 10 O -0.502 6.502 11 C 0.046 3.954 12 N -0.672 5.672 13 C 0.213 3.787 14 H 0.005 0.995 15 C -0.127 4.127 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.287 1.287 22 H -0.278 1.278 23 H -0.276 1.276 24 C -0.044 4.044 25 N 0.039 4.961 26 O -0.153 6.153 27 O -0.167 6.167 28 C -0.077 4.077 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.150 0.850 35 H 0.168 0.832 36 H 0.424 0.576 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.340 0.660 40 H 0.005 0.995 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.987 2.027 7.816 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.223 6.223 4 C 0.066 3.934 5 C -0.152 4.152 6 C -0.108 4.108 7 C 0.099 3.901 8 N -0.325 5.325 9 C 0.308 3.692 10 O -0.375 6.375 11 C -0.087 4.087 12 N -0.305 5.305 13 C 0.106 3.894 14 H 0.022 0.978 15 C -0.185 4.185 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.202 1.202 24 C -0.131 4.131 25 N 0.556 4.444 26 O -0.370 6.370 27 O -0.377 6.377 28 C -0.097 4.097 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.266 0.734 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.024 0.976 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.518 1.181 6.770 27.394 hybrid contribution 1.152 -0.471 0.901 1.536 sum -25.366 0.710 7.670 26.510 Atomic orbital electron populations 1.21784 0.92209 1.03190 1.03769 1.22929 0.96374 0.81235 1.01884 1.86109 1.17438 1.30022 1.88681 1.18432 0.83491 0.92405 0.99100 1.21651 0.93544 0.99247 1.00801 1.21292 0.95076 0.96077 0.98309 1.17488 0.84224 0.91663 0.96699 1.44291 1.02939 1.33285 1.51992 1.21554 0.90148 0.81497 0.75967 1.90666 1.75647 1.27565 1.43594 1.21845 0.87588 1.00416 0.98824 1.60570 1.14485 1.03167 1.52295 1.19177 0.79972 0.95981 0.94294 0.97789 1.21747 1.02760 0.95354 0.98661 1.21180 0.91730 0.92804 1.50108 0.92120 1.24914 0.97365 0.96695 0.95016 1.69882 1.06490 1.26515 1.49873 0.86543 0.78204 0.83703 0.78848 1.21284 1.20328 1.20155 1.20539 0.93367 0.80890 1.18298 1.43352 1.00848 1.02681 0.97556 1.94544 1.58193 1.31566 1.52685 1.94450 0.97637 1.91775 1.53809 1.19802 0.91760 0.97488 1.00625 0.90033 0.91345 0.91296 0.91473 0.91565 0.83287 0.81456 0.73397 0.92485 0.87758 0.84126 0.97571 0.89860 0.94787 0.92782 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 10.28 37.16 0.38 -0.18 16 2 C 0.05 0.25 5.46 37.16 0.20 0.46 16 3 O -0.31 -2.48 10.14 -19.65 -0.20 -2.68 16 4 C 0.11 1.01 6.69 -39.22 -0.26 0.75 16 5 C -0.13 -1.12 9.03 -39.46 -0.36 -1.48 16 6 C -0.09 -0.94 8.69 -39.41 -0.34 -1.29 16 7 C 0.20 2.43 6.29 -83.62 -0.53 1.90 16 8 N -0.67 -8.61 4.56 -9.83 -0.04 -8.65 16 9 C 0.52 8.04 7.71 -10.98 -0.08 7.96 16 10 O -0.50 -8.97 13.66 5.55 0.08 -8.90 16 11 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 12 N -0.67 -14.27 5.93 -109.21 -0.65 -14.92 16 13 C 0.21 5.26 2.60 -68.86 -0.18 5.08 16 14 H 0.00 0.12 7.80 -51.93 -0.40 -0.29 16 15 C -0.13 -3.11 9.19 37.16 0.34 -2.77 16 16 C -0.52 -14.07 8.59 -34.44 -0.30 -14.37 16 17 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.04 -0.52 6.86 -79.78 -0.55 -1.07 16 25 N 0.04 0.51 4.45 34.05 0.15 0.67 16 26 O -0.15 -2.05 18.46 -29.46 -0.54 -2.59 16 27 O -0.17 -2.32 16.02 -29.46 -0.47 -2.79 16 28 C -0.08 -0.77 9.49 -39.45 -0.37 -1.14 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.29 7.66 -51.93 -0.40 -0.11 16 33 H 0.07 0.25 7.66 -51.93 -0.40 -0.15 16 34 H 0.15 0.84 6.29 -52.49 -0.33 0.51 16 35 H 0.17 1.95 6.24 -52.49 -0.33 1.63 16 36 H 0.42 4.84 6.51 -40.82 -0.27 4.57 16 37 H 0.06 0.87 8.05 -51.93 -0.42 0.46 16 38 H 0.10 1.71 7.44 -51.93 -0.39 1.33 16 39 H 0.34 7.25 7.92 -39.29 -0.31 6.94 16 40 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 41 H 0.08 2.21 6.07 -51.92 -0.32 1.90 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 44 H 0.16 1.43 7.62 -52.49 -0.40 1.03 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -31.15 372.74 -8.19 -39.34 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.57 Total: 6.98 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.17 Total: -3.81 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.09 Total: -47.23 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -1.14 Total: -16.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.15 -8.19 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001619199021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.642 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds