Wall clock time and date at job start Tue Mar 31 2020 22:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46722 * 2 1 4 4 C 1.35972 * 116.99255 * 180.02562 * 3 2 1 5 5 C 1.38744 * 119.98926 * 0.02562 * 4 3 2 6 6 C 1.38068 * 120.01354 * 179.97438 * 5 4 3 7 7 C 1.38861 * 119.98602 * 0.02562 * 6 5 4 8 8 N 1.40120 * 120.01696 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99555 * 35.28168 * 8 7 6 10 10 O 1.21294 * 120.00229 * 355.55995 * 9 8 7 11 11 C 1.50702 * 119.99432 * 175.55859 * 9 8 7 12 12 N 1.46908 * 109.46654 * 180.02562 * 11 9 8 13 13 C 1.46896 * 110.99486 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47300 * 35.00117 * 13 12 11 15 15 C 1.53001 * 109.47057 * 274.99539 * 13 12 11 16 16 C 1.50711 * 109.46911 * 155.00171 * 13 12 11 17 17 H 1.08000 * 119.99656 * 359.97438 * 16 13 12 18 18 C 1.37870 * 120.00038 * 179.97438 * 16 13 12 19 19 N 1.31520 * 120.00083 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00084 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47247 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46954 * 299.99919 * 20 18 16 23 23 H 1.48499 * 109.46867 * 59.99977 * 20 18 16 24 24 C 1.38827 * 119.97342 * 0.25140 * 7 6 5 25 25 N 1.48012 * 120.00875 * 179.73048 * 24 7 6 26 26 O 1.21805 * 119.99825 * 185.43190 * 25 24 7 27 27 O 1.21797 * 120.00220 * 5.42819 * 25 24 7 28 28 C 1.38114 * 119.98368 * 359.51311 * 24 7 6 29 29 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47459 * 300.00248 * 1 2 3 31 31 H 1.09002 * 109.47096 * 59.99758 * 1 2 3 32 32 H 1.08995 * 109.47107 * 240.00173 * 2 1 3 33 33 H 1.08999 * 109.47180 * 119.99728 * 2 1 3 34 34 H 1.07993 * 119.99116 * 359.97438 * 5 4 3 35 35 H 1.08002 * 120.00530 * 179.97438 * 6 5 4 36 36 H 0.96998 * 119.99801 * 215.29227 * 8 7 6 37 37 H 1.08991 * 109.47161 * 60.00534 * 11 9 8 38 38 H 1.08998 * 109.47250 * 300.00198 * 11 9 8 39 39 H 1.00899 * 110.99425 * 303.95016 * 12 11 9 40 40 H 1.08997 * 109.47195 * 60.00882 * 15 13 12 41 41 H 1.09007 * 109.46948 * 180.02562 * 15 13 12 42 42 H 1.08993 * 109.47237 * 300.00424 * 15 13 12 43 43 H 0.96998 * 119.99779 * 180.02562 * 19 18 16 44 44 H 1.07997 * 119.99155 * 180.21390 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 4.1992 0.4249 -0.0016 6 6 5.5680 0.6051 -0.0027 7 6 6.0991 1.8882 -0.0022 8 7 7.4882 2.0718 -0.0027 9 6 8.2808 1.2159 -0.6778 10 8 7.8003 0.2417 -1.2176 11 6 9.7639 1.4694 -0.7620 12 7 10.3993 0.4019 -1.5463 13 6 11.8489 0.6161 -1.6492 14 1 12.2176 1.0578 -0.7234 15 6 12.1434 1.5594 -2.8172 16 6 12.5363 -0.7044 -1.8845 17 1 11.9543 -1.6118 -1.9504 18 6 13.9078 -0.7539 -2.0154 19 7 14.6164 0.3513 -1.9356 20 14 14.7599 -2.3906 -2.3063 21 1 16.2252 -2.1741 -2.4117 22 1 14.4746 -3.3056 -1.1720 23 1 14.2571 -2.9932 -3.5670 24 6 5.2532 2.9889 0.0047 25 7 5.8184 4.3569 0.0113 26 8 5.0805 5.3202 0.1171 27 8 7.0213 4.5193 -0.0891 28 6 3.8840 2.8073 0.0009 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7860 -0.5729 -0.0016 35 1 6.2256 -0.2516 -0.0031 36 1 7.8793 2.8149 0.4829 37 1 10.1875 1.4842 0.2421 38 1 9.9415 2.4300 -1.2456 39 1 10.1949 -0.5051 -1.1544 40 1 11.6464 2.5145 -2.6471 41 1 13.2192 1.7180 -2.8939 42 1 11.7747 1.1177 -3.7429 43 1 15.5813 0.3164 -2.0281 44 1 3.2259 3.6636 0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001619199021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:39 Heat of formation + Delta-G solvation = -56.481665 kcal Electronic energy + Delta-G solvation = -28586.742861 eV Core-core repulsion = 24314.695325 eV Total energy + Delta-G solvation = -4272.047536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -43.50766 -41.86640 -40.92956 -38.88349 -37.86689 -37.45654 -35.72811 -34.50159 -33.17899 -32.75607 -31.31613 -30.06509 -27.98265 -27.42515 -26.57293 -24.88986 -24.28649 -22.93217 -21.96782 -21.55765 -20.63655 -19.92238 -19.26295 -18.72228 -18.66671 -18.27670 -17.98047 -17.31538 -17.15888 -16.67888 -16.50516 -15.98363 -15.44372 -15.38977 -15.09064 -14.83472 -14.59102 -14.40290 -14.23404 -13.66090 -13.50667 -13.40936 -13.29365 -13.12010 -12.82252 -12.79902 -12.69558 -12.47892 -12.39634 -12.32859 -12.19016 -12.18560 -12.01866 -11.92943 -11.24865 -11.08578 -10.89877 -10.74019 -10.55917 -9.25809 -9.11521 -8.13083 -6.26626 -1.39896 -0.19814 0.10817 0.17120 1.30729 1.43539 1.45673 1.52888 1.61924 2.00378 2.15590 2.42629 3.15060 3.15694 3.36803 3.48109 3.62709 3.71238 3.71803 4.04791 4.06055 4.13086 4.35610 4.36631 4.39518 4.44062 4.62354 4.73378 4.83672 4.85145 4.89811 4.95515 5.06471 5.08814 5.18866 5.25334 5.30297 5.43700 5.65263 5.83245 6.05221 6.10510 6.22276 6.38259 6.40487 6.68857 6.84863 6.95830 7.43098 8.92189 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002324 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.796731 B =12045.823963 C =13584.935715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.038 3.962 3 O -0.316 6.316 4 C 0.124 3.876 5 C -0.116 4.116 6 C -0.093 4.093 7 C 0.176 3.824 8 N -0.662 5.662 9 C 0.528 3.472 10 O -0.529 6.529 11 C 0.045 3.955 12 N -0.678 5.678 13 C 0.217 3.783 14 H -0.015 1.015 15 C -0.117 4.117 16 C -0.539 4.539 17 H 0.057 0.943 18 C 0.015 3.985 19 N -0.914 5.914 20 Si 0.962 3.038 21 H -0.283 1.283 22 H -0.270 1.270 23 H -0.275 1.275 24 C -0.049 4.049 25 N 0.039 4.961 26 O -0.156 6.156 27 O -0.189 6.189 28 C -0.078 4.078 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.429 0.571 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.338 0.662 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.978 0.829 8.245 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.036 4.036 3 O -0.230 6.230 4 C 0.077 3.923 5 C -0.135 4.135 6 C -0.113 4.113 7 C 0.078 3.922 8 N -0.314 5.314 9 C 0.318 3.682 10 O -0.404 6.404 11 C -0.088 4.088 12 N -0.310 5.310 13 C 0.109 3.891 14 H 0.003 0.997 15 C -0.175 4.175 16 C -0.578 4.578 17 H 0.075 0.925 18 C -0.185 4.185 19 N -0.553 5.553 20 Si 0.787 3.213 21 H -0.209 1.209 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.136 4.136 25 N 0.553 4.447 26 O -0.374 6.374 27 O -0.395 6.395 28 C -0.098 4.098 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.199 0.801 35 H 0.178 0.822 36 H 0.272 0.728 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.157 0.843 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -28.525 0.011 7.219 29.424 hybrid contribution 1.542 -0.098 0.810 1.745 sum -26.982 -0.088 8.028 28.151 Atomic orbital electron populations 1.21822 0.91341 1.04334 1.03356 1.23286 0.97155 0.79910 1.03241 1.86135 1.16511 1.32185 1.88189 1.18448 0.84205 0.91987 0.97704 1.21935 0.92337 1.00715 0.98540 1.21301 0.96107 0.95181 0.98751 1.17646 0.83610 0.92430 0.98536 1.43996 1.03395 1.32674 1.51368 1.21103 0.89629 0.81499 0.76011 1.90655 1.75930 1.28738 1.45063 1.21856 0.88622 0.99035 0.99246 1.60413 1.12494 1.04254 1.53860 1.18972 0.81876 0.94942 0.93271 0.99727 1.21589 1.01379 0.96413 0.98158 1.21502 0.92328 0.93671 1.50251 0.92511 1.25692 0.98053 0.99960 0.94776 1.69998 1.06664 1.28252 1.50377 0.85554 0.77119 0.79802 0.78784 1.20855 1.19517 1.19995 1.20573 0.93976 0.79719 1.19312 1.43564 1.00718 1.03258 0.97179 1.94524 1.58064 1.32234 1.52598 1.94440 0.98089 1.92099 1.54832 1.19985 0.91085 0.98607 1.00158 0.88112 0.91610 0.91888 0.90380 0.89859 0.80054 0.82215 0.72773 0.90732 0.87307 0.84348 0.95397 0.92086 0.95778 0.92741 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 71.98 0.74 0.01 16 2 C 0.04 0.26 5.46 71.98 0.39 0.65 16 3 O -0.32 -4.21 10.14 -93.23 -0.95 -5.16 16 4 C 0.12 1.91 6.69 22.50 0.15 2.06 16 5 C -0.12 -1.65 9.03 22.35 0.20 -1.45 16 6 C -0.09 -1.89 8.69 22.38 0.19 -1.69 16 7 C 0.18 4.17 6.29 38.11 0.24 4.41 16 8 N -0.66 -16.73 4.56 -303.38 -1.38 -18.11 16 9 C 0.53 16.23 7.71 87.66 0.68 16.90 16 10 O -0.53 -18.77 13.66 -3.07 -0.04 -18.81 16 11 C 0.04 1.49 5.97 85.56 0.51 2.00 16 12 N -0.68 -28.90 5.93 -499.44 -2.96 -31.86 16 13 C 0.22 10.86 2.60 44.17 0.11 10.98 16 14 H -0.01 -0.78 7.80 -2.39 -0.02 -0.80 16 15 C -0.12 -5.79 9.19 71.98 0.66 -5.13 16 16 C -0.54 -29.44 8.59 25.60 0.22 -29.22 16 17 H 0.06 3.07 7.62 -2.91 -0.02 3.05 16 18 C 0.01 0.81 5.30 84.65 0.45 1.26 16 19 N -0.91 -51.75 11.32 21.45 0.24 -51.51 16 20 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 C -0.05 -1.11 6.86 36.49 0.25 -0.86 16 25 N 0.04 1.02 4.45 -46.20 -0.21 0.82 16 26 O -0.16 -4.12 18.46 18.88 0.35 -3.78 16 27 O -0.19 -5.27 16.02 18.89 0.30 -4.97 16 28 C -0.08 -1.44 9.49 22.35 0.21 -1.23 16 29 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.39 7.66 -2.39 -0.02 0.37 16 33 H 0.08 0.31 7.66 -2.39 -0.02 0.29 16 34 H 0.18 1.33 6.29 -2.91 -0.02 1.31 16 35 H 0.16 3.58 6.24 -2.91 -0.02 3.56 16 36 H 0.43 9.74 6.51 -92.71 -0.60 9.14 16 37 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 38 H 0.11 3.53 7.44 -2.39 -0.02 3.51 16 39 H 0.34 14.54 7.92 -89.69 -0.71 13.83 16 40 H 0.03 1.20 7.45 -2.39 -0.02 1.19 16 41 H 0.06 3.29 6.07 -2.38 -0.01 3.28 16 42 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.17 2.77 7.62 -2.91 -0.02 2.74 16 Total: -1.00 -66.72 372.74 2.15 -64.57 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.25 Total: 24.86 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.01 Total: -1.29 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -4.31 Total: -100.66 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.34 Total: -32.71 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -66.72 2.15 -64.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001619199021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.092 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds