Wall clock time and date at job start Tue Mar 31 2020 21:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35968 * 116.99860 * 2 1 4 4 C 1.38745 * 119.98972 * 0.29479 * 3 2 1 5 5 C 1.38059 * 120.01823 * 180.30695 * 4 3 2 6 6 C 1.38871 * 119.98407 * 359.41384 * 5 4 3 7 7 N 1.40116 * 120.01648 * 180.30290 * 6 5 4 8 8 C 1.34766 * 119.99514 * 25.25837 * 7 6 5 9 9 O 1.21296 * 120.00805 * 5.61320 * 8 7 6 10 10 C 1.50703 * 119.99722 * 185.61055 * 8 7 6 11 11 H 1.08993 * 109.47216 * 300.00223 * 10 8 7 12 12 C 1.53007 * 109.46972 * 60.00220 * 10 8 7 13 13 N 1.46899 * 109.47265 * 180.02562 * 10 8 7 14 14 C 1.46902 * 110.99947 * 155.00070 * 13 10 8 15 15 H 1.08994 * 109.47114 * 35.00638 * 14 13 10 16 16 C 1.53000 * 109.47061 * 274.99770 * 14 13 10 17 17 C 1.50708 * 109.46830 * 155.00158 * 14 13 10 18 18 H 1.07991 * 120.00334 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99595 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00221 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99669 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47192 * 59.99958 * 21 19 17 23 23 H 1.48508 * 109.47146 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47289 * 299.99652 * 21 19 17 25 25 C 1.38830 * 119.96874 * 0.28808 * 6 5 4 26 26 N 1.48021 * 120.00389 * 179.97438 * 25 6 5 27 27 O 1.21795 * 119.99680 * 185.32878 * 26 25 6 28 28 O 1.21799 * 120.00311 * 5.33075 * 26 25 6 29 29 C 1.38111 * 119.98652 * 359.97438 * 25 6 5 30 30 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47168 * 300.00069 * 1 2 3 32 32 H 1.08998 * 109.47064 * 60.00787 * 1 2 3 33 33 H 1.08000 * 119.98685 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.01085 * 179.70243 * 5 4 3 35 35 H 0.96994 * 119.99696 * 205.25873 * 7 6 5 36 36 H 1.08997 * 109.46797 * 180.02562 * 12 10 8 37 37 H 1.08993 * 109.46798 * 299.99778 * 12 10 8 38 38 H 1.08993 * 109.47148 * 59.99961 * 12 10 8 39 39 H 1.00906 * 111.00134 * 278.95532 * 13 10 8 40 40 H 1.08997 * 109.47288 * 299.99945 * 16 14 13 41 41 H 1.08996 * 109.46887 * 60.00480 * 16 14 13 42 42 H 1.08994 * 109.46982 * 179.97438 * 16 14 13 43 43 H 0.96997 * 120.00311 * 180.02562 * 20 19 17 44 44 H 1.07993 * 119.98973 * 180.02562 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2903 2.3750 0.0062 5 6 1.9164 3.6054 -0.0002 6 6 3.3032 3.6785 -0.0005 7 7 3.9393 4.9269 -0.0006 8 6 3.3048 6.0064 0.4976 9 8 2.2262 5.8803 1.0380 10 6 3.9354 7.3704 0.3835 11 1 4.8971 7.3701 0.8965 12 6 4.1450 7.7135 -1.0928 13 7 3.0531 8.3708 0.9987 14 6 3.8173 9.5435 1.4447 15 1 4.6353 9.7301 0.7490 16 6 4.3849 9.2814 2.8412 17 6 2.9109 10.7467 1.4886 18 1 1.8714 10.6501 1.2124 19 6 3.4092 11.9712 1.8804 20 7 4.6752 12.0891 2.2162 21 14 2.2859 13.4627 1.9341 22 1 1.1712 13.2091 2.8819 23 1 3.0583 14.6482 2.3850 24 1 1.7350 13.7167 0.5786 25 6 4.0590 2.5139 -0.0005 26 7 5.5372 2.5909 -0.0014 27 8 6.1999 1.5737 -0.0993 28 8 6.0909 3.6714 0.0958 29 6 3.4314 1.2837 0.0004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.2119 2.3180 0.0106 34 1 1.3279 4.5109 -0.0003 35 1 4.8363 5.0141 -0.3593 36 1 4.6015 8.6998 -1.1753 37 1 4.7999 6.9711 -1.5488 38 1 3.1833 7.7137 -1.6058 39 1 2.3146 8.6398 0.3659 40 1 3.5668 9.0949 3.5368 41 1 5.0404 8.4112 2.8094 42 1 4.9523 10.1513 3.1718 43 1 5.0257 12.9504 2.4922 44 1 4.0193 0.3778 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646523922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:31 Heat of formation + Delta-G solvation = -30.412310 kcal Electronic energy + Delta-G solvation = -29262.118852 eV Core-core repulsion = 24991.201768 eV Total energy + Delta-G solvation = -4270.917084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.54106 -40.94457 -40.01148 -37.93377 -36.86985 -36.17297 -34.63220 -33.13191 -32.28873 -30.78130 -29.81354 -27.72904 -27.02239 -26.57428 -25.29263 -24.43510 -23.29036 -22.40417 -20.45779 -19.74347 -19.66290 -18.94822 -18.17921 -17.70884 -17.47819 -17.31836 -16.65710 -16.28205 -15.99244 -15.35238 -14.81823 -14.75211 -14.51605 -14.08746 -13.95601 -13.53560 -13.46175 -13.35246 -13.06828 -12.55079 -12.45024 -12.17426 -11.97492 -11.81191 -11.74690 -11.55383 -11.38405 -11.34924 -11.06443 -10.90672 -10.78673 -10.48260 -10.39295 -10.17593 -10.10639 -10.00324 -9.53632 -8.92031 -8.52357 -8.29108 -7.40460 -6.07514 -4.14079 -0.44571 0.66753 1.04995 1.10610 2.52694 2.61312 2.79087 3.07429 3.28673 3.33548 3.36416 4.01155 4.19934 4.26201 4.36458 4.49736 4.64743 4.66219 4.72306 4.96204 5.03726 5.06867 5.22183 5.24244 5.32397 5.44055 5.46147 5.55580 5.72490 5.85631 6.00827 6.11153 6.23401 6.29711 6.70425 6.79117 7.07222 7.10073 7.19340 7.40386 7.43988 7.72249 7.80819 8.07793 8.19914 8.27007 8.54516 8.94516 9.51889 10.98845 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.002562 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.452356 B =10924.701055 C =12043.365229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.103 3.897 4 C -0.127 4.127 5 C -0.100 4.100 6 C 0.208 3.792 7 N -0.670 5.670 8 C 0.522 3.478 9 O -0.492 6.492 10 C 0.072 3.928 11 H 0.107 0.893 12 C -0.177 4.177 13 N -0.665 5.665 14 C 0.215 3.785 15 H 0.007 0.993 16 C -0.128 4.128 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.054 4.054 26 N 0.042 4.958 27 O -0.148 6.148 28 O -0.177 6.177 29 C -0.073 4.073 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.424 0.576 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.339 0.661 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.083 0.917 43 H 0.262 0.738 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -22.563 -8.180 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.056 3.944 4 C -0.146 4.146 5 C -0.121 4.121 6 C 0.107 3.893 7 N -0.323 5.323 8 C 0.310 3.690 9 O -0.363 6.363 10 C -0.042 4.042 11 H 0.125 0.875 12 C -0.236 4.236 13 N -0.296 5.296 14 C 0.108 3.892 15 H 0.024 0.976 16 C -0.186 4.186 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.141 4.141 26 N 0.557 4.443 27 O -0.367 6.367 28 O -0.383 6.383 29 C -0.093 4.093 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.167 0.833 34 H 0.191 0.809 35 H 0.269 0.731 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.428 -22.811 -7.081 24.734 hybrid contribution 0.270 1.325 -0.863 1.605 sum -6.158 -21.485 -7.944 23.720 Atomic orbital electron populations 1.23177 0.77504 1.04625 1.01787 1.86100 1.21916 1.25422 1.88924 1.18466 0.90898 0.85113 0.99963 1.21661 1.01460 0.91312 1.00211 1.21426 0.91509 0.99930 0.99202 1.17596 0.92095 0.84061 0.95533 1.44620 1.21553 1.05351 1.60815 1.21644 0.85497 0.86054 0.75814 1.90620 1.20979 1.85478 1.39222 1.21431 0.98264 0.89305 0.95247 0.87494 1.22478 1.02242 1.03416 0.95483 1.60447 1.12549 1.14420 1.42206 1.19165 0.92257 0.84983 0.92806 0.97566 1.21766 0.98863 0.99111 0.98847 1.21167 0.96216 0.92560 1.45894 0.92160 1.24901 0.95128 0.98865 0.94994 1.69875 1.12982 1.24821 1.45060 0.86562 0.80596 0.81805 0.78441 1.20178 1.21287 1.20322 1.20414 0.79100 0.94885 1.19727 1.43358 1.03048 1.00464 0.97397 1.94539 1.64274 1.25419 1.52482 1.94373 1.72908 1.16408 1.54599 1.19764 0.92494 0.96660 1.00374 0.87649 0.92146 0.92229 0.83253 0.80901 0.73088 0.90211 0.92544 0.92204 0.84215 0.94780 0.97761 0.89857 0.92770 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.47 10.50 -19.64 -0.21 -2.68 16 3 C 0.10 0.93 6.69 -39.22 -0.26 0.67 16 4 C -0.13 -1.09 9.03 -39.46 -0.36 -1.45 16 5 C -0.10 -1.12 8.71 -39.41 -0.34 -1.47 16 6 C 0.21 2.61 6.41 -83.62 -0.54 2.07 16 7 N -0.67 -8.91 4.71 -9.83 -0.05 -8.95 16 8 C 0.52 8.26 7.03 -10.99 -0.08 8.18 16 9 O -0.49 -8.97 13.62 5.54 0.08 -8.89 16 10 C 0.07 1.21 2.81 -68.86 -0.19 1.01 16 11 H 0.11 1.82 7.11 -51.93 -0.37 1.46 16 12 C -0.18 -2.46 9.05 37.16 0.34 -2.12 16 13 N -0.66 -13.77 5.54 -102.16 -0.57 -14.34 16 14 C 0.21 5.21 2.41 -68.86 -0.17 5.04 16 15 H 0.01 0.17 7.11 -51.93 -0.37 -0.20 16 16 C -0.13 -3.14 9.17 37.16 0.34 -2.80 16 17 C -0.52 -13.86 8.59 -34.43 -0.30 -14.15 16 18 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 C -0.05 -0.64 6.86 -79.77 -0.55 -1.19 16 26 N 0.04 0.56 4.45 34.05 0.15 0.71 16 27 O -0.15 -1.99 18.46 -29.46 -0.54 -2.53 16 28 O -0.18 -2.49 15.86 -29.46 -0.47 -2.96 16 29 C -0.07 -0.74 9.49 -39.46 -0.37 -1.11 16 30 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 32 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 33 H 0.15 0.85 6.29 -52.49 -0.33 0.52 16 34 H 0.17 2.13 5.82 -52.49 -0.31 1.82 16 35 H 0.42 5.21 5.55 -40.82 -0.23 4.98 16 36 H 0.08 1.22 7.43 -51.93 -0.39 0.84 16 37 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 38 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 39 H 0.34 6.91 7.97 -39.29 -0.31 6.60 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.00 0.08 7.42 -51.93 -0.39 -0.31 16 42 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.16 1.44 7.62 -52.49 -0.40 1.04 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -30.81 368.44 -7.42 -38.23 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.40 Total: 8.72 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.58 Total: -4.61 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.17 Total: -46.72 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -1.14 Total: -17.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.81 -7.42 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646523922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.815 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds