Wall clock time and date at job start Tue Mar 31 2020 21:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35968 * 116.99860 * 2 1 4 4 C 1.38745 * 119.98972 * 0.29479 * 3 2 1 5 5 C 1.38059 * 120.01823 * 180.30695 * 4 3 2 6 6 C 1.38871 * 119.98407 * 359.41384 * 5 4 3 7 7 N 1.40116 * 120.01648 * 180.30290 * 6 5 4 8 8 C 1.34766 * 119.99514 * 25.25837 * 7 6 5 9 9 O 1.21296 * 120.00805 * 5.61320 * 8 7 6 10 10 C 1.50703 * 119.99722 * 185.61055 * 8 7 6 11 11 H 1.08993 * 109.47216 * 300.00223 * 10 8 7 12 12 C 1.53007 * 109.46972 * 60.00220 * 10 8 7 13 13 N 1.46899 * 109.47265 * 180.02562 * 10 8 7 14 14 C 1.46902 * 110.99947 * 155.00070 * 13 10 8 15 15 H 1.08994 * 109.47114 * 35.00638 * 14 13 10 16 16 C 1.53000 * 109.47061 * 274.99770 * 14 13 10 17 17 C 1.50708 * 109.46830 * 155.00158 * 14 13 10 18 18 H 1.07991 * 120.00334 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99595 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00221 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99669 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47192 * 59.99958 * 21 19 17 23 23 H 1.48508 * 109.47146 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47289 * 299.99652 * 21 19 17 25 25 C 1.38830 * 119.96874 * 0.28808 * 6 5 4 26 26 N 1.48021 * 120.00389 * 179.97438 * 25 6 5 27 27 O 1.21795 * 119.99680 * 185.32878 * 26 25 6 28 28 O 1.21799 * 120.00311 * 5.33075 * 26 25 6 29 29 C 1.38111 * 119.98652 * 359.97438 * 25 6 5 30 30 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47168 * 300.00069 * 1 2 3 32 32 H 1.08998 * 109.47064 * 60.00787 * 1 2 3 33 33 H 1.08000 * 119.98685 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.01085 * 179.70243 * 5 4 3 35 35 H 0.96994 * 119.99696 * 205.25873 * 7 6 5 36 36 H 1.08997 * 109.46797 * 180.02562 * 12 10 8 37 37 H 1.08993 * 109.46798 * 299.99778 * 12 10 8 38 38 H 1.08993 * 109.47148 * 59.99961 * 12 10 8 39 39 H 1.00906 * 111.00134 * 278.95532 * 13 10 8 40 40 H 1.08997 * 109.47288 * 299.99945 * 16 14 13 41 41 H 1.08996 * 109.46887 * 60.00480 * 16 14 13 42 42 H 1.08994 * 109.46982 * 179.97438 * 16 14 13 43 43 H 0.96997 * 120.00311 * 180.02562 * 20 19 17 44 44 H 1.07993 * 119.98973 * 180.02562 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2903 2.3750 0.0062 5 6 1.9164 3.6054 -0.0002 6 6 3.3032 3.6785 -0.0005 7 7 3.9393 4.9269 -0.0006 8 6 3.3048 6.0064 0.4976 9 8 2.2262 5.8803 1.0380 10 6 3.9354 7.3704 0.3835 11 1 4.8971 7.3701 0.8965 12 6 4.1450 7.7135 -1.0928 13 7 3.0531 8.3708 0.9987 14 6 3.8173 9.5435 1.4447 15 1 4.6353 9.7301 0.7490 16 6 4.3849 9.2814 2.8412 17 6 2.9109 10.7467 1.4886 18 1 1.8714 10.6501 1.2124 19 6 3.4092 11.9712 1.8804 20 7 4.6752 12.0891 2.2162 21 14 2.2859 13.4627 1.9341 22 1 1.1712 13.2091 2.8819 23 1 3.0583 14.6482 2.3850 24 1 1.7350 13.7167 0.5786 25 6 4.0590 2.5139 -0.0005 26 7 5.5372 2.5909 -0.0014 27 8 6.1999 1.5737 -0.0993 28 8 6.0909 3.6714 0.0958 29 6 3.4314 1.2837 0.0004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.2119 2.3180 0.0106 34 1 1.3279 4.5109 -0.0003 35 1 4.8363 5.0141 -0.3593 36 1 4.6015 8.6998 -1.1753 37 1 4.7999 6.9711 -1.5488 38 1 3.1833 7.7137 -1.6058 39 1 2.3146 8.6398 0.3659 40 1 3.5668 9.0949 3.5368 41 1 5.0404 8.4112 2.8094 42 1 4.9523 10.1513 3.1718 43 1 5.0257 12.9504 2.4922 44 1 4.0193 0.3778 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646523922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:24 Heat of formation + Delta-G solvation = -50.313415 kcal Electronic energy + Delta-G solvation = -29262.981829 eV Core-core repulsion = 24991.201768 eV Total energy + Delta-G solvation = -4271.780061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -43.53603 -41.91842 -40.93122 -38.86835 -37.89768 -37.73856 -35.70443 -34.93922 -33.13514 -32.34854 -30.81051 -28.79516 -28.19624 -27.43198 -27.28966 -25.59520 -24.32968 -23.33304 -21.97258 -21.19201 -20.58481 -19.96558 -19.28685 -18.73837 -18.68119 -18.15571 -17.97806 -17.30779 -16.81793 -16.73263 -16.31852 -16.01593 -15.61416 -15.33041 -15.02224 -14.96343 -14.36580 -14.31942 -14.25413 -13.82245 -13.62452 -13.45926 -13.35189 -12.82645 -12.81647 -12.66457 -12.62301 -12.52983 -12.45258 -12.41890 -12.34646 -12.20166 -12.16383 -11.94423 -11.32018 -11.00198 -10.89574 -10.68634 -10.54827 -9.15827 -9.08063 -8.12710 -6.25893 -1.39056 -0.17263 0.11424 0.17021 1.37375 1.43562 1.45679 1.52643 1.60951 2.13314 2.19602 2.42733 3.14262 3.16401 3.35178 3.48689 3.58979 3.70608 3.76423 4.05252 4.06919 4.14818 4.33971 4.41271 4.44361 4.60222 4.66360 4.75540 4.77704 4.80532 4.81531 4.90725 5.04415 5.08311 5.16762 5.19072 5.29754 5.44739 5.66196 5.82921 6.08415 6.10689 6.21446 6.37527 6.42827 6.70594 6.88352 6.97943 7.43927 8.92831 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.002562 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.452356 B =10924.701055 C =12043.365229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.110 4.110 5 C -0.107 4.107 6 C 0.184 3.816 7 N -0.661 5.661 8 C 0.530 3.470 9 O -0.520 6.520 10 C 0.069 3.931 11 H 0.101 0.899 12 C -0.167 4.167 13 N -0.671 5.671 14 C 0.222 3.778 15 H -0.011 1.011 16 C -0.118 4.118 17 C -0.537 4.537 18 H 0.058 0.942 19 C 0.016 3.984 20 N -0.915 5.915 21 Si 0.960 3.040 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.058 4.058 26 N 0.042 4.958 27 O -0.148 6.148 28 O -0.201 6.201 29 C -0.075 4.075 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.428 0.572 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.340 0.660 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.263 0.737 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 -24.336 -9.028 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.068 3.932 4 C -0.130 4.130 5 C -0.127 4.127 6 C 0.085 3.915 7 N -0.315 5.315 8 C 0.318 3.682 9 O -0.394 6.394 10 C -0.045 4.045 11 H 0.119 0.881 12 C -0.226 4.226 13 N -0.303 5.303 14 C 0.114 3.886 15 H 0.006 0.994 16 C -0.176 4.176 17 C -0.576 4.576 18 H 0.076 0.924 19 C -0.183 4.183 20 N -0.554 5.554 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.145 4.145 26 N 0.554 4.446 27 O -0.369 6.369 28 O -0.402 6.402 29 C -0.095 4.095 30 H 0.143 0.857 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.181 0.819 35 H 0.273 0.727 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.158 0.842 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.113 -24.601 -7.952 27.097 hybrid contribution 0.714 1.628 -0.622 1.883 sum -7.399 -22.973 -8.573 25.612 Atomic orbital electron populations 1.23550 0.75319 1.06493 1.02970 1.86120 1.24124 1.24553 1.88372 1.18494 0.90548 0.85826 0.98346 1.21952 1.03069 0.89996 0.97949 1.21403 0.90888 1.00665 0.99794 1.17752 0.92747 0.83564 0.97482 1.44326 1.21450 1.05282 1.60394 1.21235 0.85060 0.86161 0.75703 1.90611 1.22117 1.85881 1.40768 1.21462 0.97230 0.89043 0.96770 0.88097 1.22363 1.03277 1.03331 0.93639 1.60275 1.12955 1.13608 1.43443 1.18906 0.91650 0.85848 0.92151 0.99359 1.21617 0.98379 0.98790 0.98842 1.21499 0.96468 0.93754 1.45843 0.92382 1.25668 0.96433 1.01551 0.94678 1.69995 1.14388 1.25385 1.45659 0.85580 0.78702 0.78465 0.78668 1.20078 1.20992 1.19389 1.20464 0.78005 0.95460 1.20581 1.43565 1.03723 1.00221 0.97055 1.94517 1.64817 1.25344 1.52177 1.94366 1.73464 1.16624 1.55778 1.19970 0.93348 0.96286 0.99900 0.85672 0.91202 0.90717 0.79972 0.81935 0.72652 0.91795 0.89588 0.91347 0.84152 0.95961 0.96080 0.92031 0.92783 0.80866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.32 -4.03 10.50 -93.19 -0.98 -5.01 16 3 C 0.12 1.77 6.69 22.50 0.15 1.92 16 4 C -0.11 -1.60 9.03 22.35 0.20 -1.40 16 5 C -0.11 -2.25 8.71 22.38 0.19 -2.06 16 6 C 0.18 4.48 6.41 38.11 0.24 4.72 16 7 N -0.66 -17.37 4.71 -303.39 -1.43 -18.80 16 8 C 0.53 16.75 7.03 87.66 0.62 17.37 16 9 O -0.52 -18.98 13.62 -3.08 -0.04 -19.02 16 10 C 0.07 2.32 2.81 44.17 0.12 2.44 16 11 H 0.10 3.50 7.11 -2.39 -0.02 3.48 16 12 C -0.17 -4.56 9.05 71.98 0.65 -3.91 16 13 N -0.67 -28.22 5.54 -477.14 -2.64 -30.87 16 14 C 0.22 11.01 2.41 44.17 0.11 11.12 16 15 H -0.01 -0.58 7.11 -2.39 -0.02 -0.60 16 16 C -0.12 -5.93 9.17 71.98 0.66 -5.27 16 17 C -0.54 -29.01 8.59 25.60 0.22 -28.79 16 18 H 0.06 3.09 7.62 -2.92 -0.02 3.07 16 19 C 0.02 0.89 5.30 84.66 0.45 1.33 16 20 N -0.92 -51.77 11.32 21.45 0.24 -51.53 16 21 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.06 -1.33 6.86 36.49 0.25 -1.08 16 26 N 0.04 1.10 4.45 -46.19 -0.21 0.89 16 27 O -0.15 -3.87 18.46 18.89 0.35 -3.52 16 28 O -0.20 -5.67 15.86 18.89 0.30 -5.38 16 29 C -0.08 -1.38 9.49 22.35 0.21 -1.17 16 30 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.07 0.23 7.65 -2.39 -0.02 0.21 16 32 H 0.07 0.16 7.67 -2.39 -0.02 0.14 16 33 H 0.18 1.36 6.29 -2.91 -0.02 1.34 16 34 H 0.16 3.88 5.82 -2.91 -0.02 3.86 16 35 H 0.43 10.42 5.55 -92.71 -0.51 9.90 16 36 H 0.06 1.97 7.43 -2.39 -0.02 1.95 16 37 H 0.09 1.82 7.70 -2.39 -0.02 1.80 16 38 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 39 H 0.34 14.02 7.97 -89.69 -0.71 13.31 16 40 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.02 0.93 7.42 -2.39 -0.02 0.92 16 42 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 43 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.17 2.74 7.62 -2.91 -0.02 2.71 16 Total: -1.00 -66.86 368.44 2.66 -64.20 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.16 Total: 27.61 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.19 Total: -3.60 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -4.03 Total: -100.31 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.37 Total: -32.92 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.86 2.66 -64.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646523922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.888 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds