Wall clock time and date at job start Tue Mar 31 2020 21:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35964 * 117.00112 * 2 1 4 4 C 1.38742 * 119.98684 * 0.02562 * 3 2 1 5 5 C 1.38070 * 120.01707 * 179.76593 * 4 3 2 6 6 C 1.38867 * 119.98079 * 0.48445 * 5 4 3 7 7 N 1.40116 * 120.01442 * 179.76551 * 6 5 4 8 8 C 1.34784 * 119.99530 * 34.82303 * 7 6 5 9 9 O 1.21292 * 120.00094 * 5.46962 * 8 7 6 10 10 C 1.50691 * 119.99629 * 185.46788 * 8 7 6 11 11 H 1.09004 * 109.47173 * 300.00167 * 10 8 7 12 12 C 1.53005 * 109.47487 * 60.00057 * 10 8 7 13 13 N 1.46904 * 109.47196 * 179.97438 * 10 8 7 14 14 C 1.46894 * 111.00127 * 159.78149 * 13 10 8 15 15 H 1.09002 * 109.47066 * 39.76055 * 14 13 10 16 16 C 1.52998 * 109.47131 * 159.75891 * 14 13 10 17 17 C 1.50698 * 109.47529 * 279.76095 * 14 13 10 18 18 H 1.08003 * 119.99960 * 359.97438 * 17 14 13 19 19 C 1.37881 * 120.00597 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99552 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00157 * 179.97438 * 19 17 14 22 22 H 1.48491 * 109.47339 * 60.00152 * 21 19 17 23 23 H 1.48502 * 109.46943 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47001 * 299.99550 * 21 19 17 25 25 C 1.38820 * 119.97227 * 359.49666 * 6 5 4 26 26 N 1.48015 * 120.01107 * 180.23252 * 25 6 5 27 27 O 1.21803 * 120.00362 * 185.37025 * 26 25 6 28 28 O 1.21809 * 119.99966 * 5.36506 * 26 25 6 29 29 C 1.38107 * 119.98584 * 0.24647 * 25 6 5 30 30 H 1.09008 * 109.46848 * 60.00041 * 1 2 3 31 31 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47190 * 300.00113 * 1 2 3 33 33 H 1.08003 * 119.99187 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00895 * 180.25185 * 5 4 3 35 35 H 0.96992 * 120.00228 * 214.81823 * 7 6 5 36 36 H 1.08999 * 109.46693 * 55.01390 * 12 10 8 37 37 H 1.08995 * 109.47141 * 175.01388 * 12 10 8 38 38 H 1.09004 * 109.46965 * 295.01127 * 12 10 8 39 39 H 1.00906 * 110.99643 * 35.83034 * 13 10 8 40 40 H 1.08999 * 109.47191 * 55.07901 * 16 14 13 41 41 H 1.09006 * 109.47394 * 175.07261 * 16 14 13 42 42 H 1.08998 * 109.47167 * 295.07878 * 16 14 13 43 43 H 0.97001 * 120.00084 * 179.97438 * 20 19 17 44 44 H 1.08008 * 119.99610 * 180.02562 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9166 3.6054 0.0054 6 6 3.3034 3.6783 -0.0004 7 7 3.9395 4.9268 -0.0004 8 6 3.3945 5.9608 0.6708 9 8 2.4084 5.7872 1.3553 10 6 4.0105 7.3324 0.5708 11 1 5.0383 7.2963 0.9319 12 6 3.9987 7.7917 -0.8887 13 7 3.2369 8.2774 1.3872 14 6 4.0329 9.4691 1.7095 15 1 4.6217 9.7589 0.8392 16 6 3.0987 10.6166 2.0983 17 6 4.9558 9.1607 2.8602 18 1 4.9511 8.1778 3.3078 19 6 5.8055 10.1337 3.3425 20 7 5.8108 11.3307 2.7979 21 14 6.9489 9.7515 4.7694 22 1 7.8560 8.6380 4.3923 23 1 7.7537 10.9563 5.0950 24 1 6.1463 9.3566 5.9547 25 6 4.0591 2.5139 -0.0005 26 7 5.5373 2.5907 -0.0015 27 8 6.1999 1.5735 -0.1003 28 8 6.0911 3.6711 0.0965 29 6 3.4315 1.2837 0.0000 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2119 2.3180 0.0014 34 1 1.3281 4.5109 0.0100 35 1 4.7721 5.0468 -0.4833 36 1 2.9812 7.7430 -1.2765 37 1 4.3622 8.8174 -0.9497 38 1 4.6443 7.1417 -1.4794 39 1 2.8940 7.8338 2.2262 40 1 2.4489 10.2961 2.9127 41 1 3.6903 11.4733 2.4214 42 1 2.4913 10.8980 1.2381 43 1 6.4083 12.0154 3.1373 44 1 4.0193 0.3776 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646523924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:56 Heat of formation + Delta-G solvation = -35.839576 kcal Electronic energy + Delta-G solvation = -29466.287368 eV Core-core repulsion = 25195.134940 eV Total energy + Delta-G solvation = -4271.152428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48073 -40.93340 -40.03183 -37.97330 -36.79134 -35.99291 -34.66119 -32.99999 -32.31458 -30.83132 -29.82093 -27.72080 -27.19397 -26.55973 -25.08544 -24.38567 -23.13107 -22.29696 -20.34554 -19.76009 -19.70550 -18.88746 -18.11321 -17.65790 -17.47047 -17.14251 -16.66207 -16.35776 -16.24394 -15.29029 -14.97693 -14.76157 -14.57659 -14.35589 -13.85031 -13.46966 -13.40262 -13.08596 -13.01484 -12.53828 -12.12583 -11.92148 -11.88740 -11.79907 -11.70118 -11.41681 -11.31740 -11.28544 -11.22313 -10.97524 -10.81369 -10.33605 -10.28994 -10.17002 -10.04953 -10.00037 -9.58031 -9.17729 -8.41981 -8.37191 -7.43113 -6.03303 -4.16715 -0.43519 0.62884 1.06740 1.13675 2.50684 2.60493 2.79539 3.03818 3.29112 3.33612 3.37404 4.01183 4.18077 4.25304 4.38590 4.48226 4.62947 4.64586 4.71691 4.95449 5.03880 5.12007 5.19748 5.24516 5.43438 5.53169 5.55560 5.66654 5.77980 6.02163 6.12003 6.23721 6.32678 6.53620 6.67680 6.83855 7.10204 7.13101 7.22807 7.44131 7.47470 7.70570 7.98904 8.02583 8.09883 8.23496 8.56191 8.93885 9.51978 10.97238 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002930 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.557682 B = 9554.113189 C =10401.803712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.109 3.891 4 C -0.131 4.131 5 C -0.086 4.086 6 C 0.202 3.798 7 N -0.670 5.670 8 C 0.524 3.476 9 O -0.510 6.510 10 C 0.075 3.925 11 H 0.085 0.915 12 C -0.133 4.133 13 N -0.673 5.673 14 C 0.208 3.792 15 H 0.038 0.962 16 C -0.126 4.126 17 C -0.551 4.551 18 H 0.052 0.948 19 C 0.070 3.930 20 N -0.885 5.885 21 Si 0.889 3.111 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.045 4.045 26 N 0.038 4.962 27 O -0.152 6.152 28 O -0.166 6.166 29 C -0.075 4.075 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.425 0.575 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.342 0.658 40 H 0.024 0.976 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.263 0.737 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 -19.990 -10.085 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.151 4.151 5 C -0.107 4.107 6 C 0.102 3.898 7 N -0.322 5.322 8 C 0.313 3.687 9 O -0.383 6.383 10 C -0.039 4.039 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.307 5.307 14 C 0.101 3.899 15 H 0.056 0.944 16 C -0.185 4.185 17 C -0.590 4.590 18 H 0.070 0.930 19 C -0.133 4.133 20 N -0.523 5.523 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.132 4.132 26 N 0.555 4.445 27 O -0.369 6.369 28 O -0.376 6.376 29 C -0.095 4.095 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.268 0.732 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.161 0.839 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.192 -19.696 -10.111 24.808 hybrid contribution 1.885 -0.403 1.389 2.375 sum -9.307 -20.098 -8.723 23.805 Atomic orbital electron populations 1.23190 0.77449 1.04675 1.01802 1.86108 1.21969 1.25384 1.88801 1.18464 0.90892 0.85109 0.99365 1.21613 1.01447 0.91271 1.00735 1.21114 0.91453 0.99438 0.98687 1.17493 0.91903 0.84120 0.96249 1.44310 1.28306 1.07201 1.52356 1.21622 0.83637 0.86519 0.76921 1.90667 1.25509 1.84170 1.37940 1.21369 0.98376 0.86673 0.97467 0.89797 1.21751 1.01646 1.02830 0.92923 1.61028 1.37776 1.07313 1.24568 1.19225 0.89829 0.85648 0.95215 0.94389 1.21681 0.98097 1.01108 0.97564 1.21814 1.21468 0.97934 1.17785 0.92964 1.24902 0.96799 0.94961 0.96622 1.69857 1.37943 1.03071 1.41396 0.86711 0.80922 0.77798 0.82945 1.20186 1.21154 1.20287 1.20536 0.79431 0.94920 1.18279 1.43359 1.02958 1.00577 0.97605 1.94538 1.64190 1.25499 1.52690 1.94476 1.72969 1.16332 1.53778 1.19806 0.92518 0.96773 1.00450 0.92196 0.87607 0.92113 0.83205 0.81938 0.73240 0.92333 0.90412 0.93006 0.83905 0.95697 0.89619 0.96688 0.92732 0.81941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.46 10.50 -19.63 -0.21 -2.66 16 3 C 0.11 0.99 6.69 -39.22 -0.26 0.72 16 4 C -0.13 -1.11 9.03 -39.46 -0.36 -1.47 16 5 C -0.09 -0.95 8.65 -39.41 -0.34 -1.30 16 6 C 0.20 2.58 6.24 -83.62 -0.52 2.06 16 7 N -0.67 -9.22 4.44 -9.83 -0.04 -9.27 16 8 C 0.52 8.60 6.90 -10.99 -0.08 8.53 16 9 O -0.51 -9.40 13.54 5.55 0.08 -9.32 16 10 C 0.07 1.33 2.87 -68.86 -0.20 1.14 16 11 H 0.08 1.64 7.49 -51.93 -0.39 1.25 16 12 C -0.13 -1.99 9.26 37.16 0.34 -1.65 16 13 N -0.67 -14.19 5.86 -102.17 -0.60 -14.79 16 14 C 0.21 5.06 2.43 -68.87 -0.17 4.90 16 15 H 0.04 0.98 6.76 -51.93 -0.35 0.63 16 16 C -0.13 -3.05 9.36 37.16 0.35 -2.70 16 17 C -0.55 -14.73 8.02 -34.44 -0.28 -15.00 16 18 H 0.05 1.41 7.80 -52.48 -0.41 1.00 16 19 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 20 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.04 -0.55 6.86 -79.78 -0.55 -1.10 16 26 N 0.04 0.54 4.45 34.04 0.15 0.69 16 27 O -0.15 -2.15 18.46 -29.46 -0.54 -2.70 16 28 O -0.17 -2.52 16.02 -29.46 -0.47 -2.99 16 29 C -0.08 -0.78 9.49 -39.46 -0.37 -1.16 16 30 H 0.06 0.18 7.66 -51.92 -0.40 -0.22 16 31 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.15 0.81 6.29 -52.48 -0.33 0.48 16 34 H 0.16 1.90 6.53 -52.49 -0.34 1.56 16 35 H 0.42 5.40 6.21 -40.82 -0.25 5.15 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.27 6.97 -51.93 -0.36 0.91 16 38 H 0.05 0.62 7.85 -51.93 -0.41 0.21 16 39 H 0.34 7.61 7.43 -39.29 -0.29 7.32 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.26 5.95 -51.93 -0.31 1.95 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 44 H 0.16 1.49 7.62 -52.48 -0.40 1.09 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -30.63 369.41 -7.46 -38.09 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.47 Total: 9.34 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.53 Total: -4.14 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.13 Total: -47.37 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.15 Total: -17.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.63 -7.46 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646523924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.251 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds