Wall clock time and date at job start Tue Mar 31 2020 21:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35964 * 117.00112 * 2 1 4 4 C 1.38742 * 119.98684 * 0.02562 * 3 2 1 5 5 C 1.38070 * 120.01707 * 179.76593 * 4 3 2 6 6 C 1.38867 * 119.98079 * 0.48445 * 5 4 3 7 7 N 1.40116 * 120.01442 * 179.76551 * 6 5 4 8 8 C 1.34784 * 119.99530 * 34.82303 * 7 6 5 9 9 O 1.21292 * 120.00094 * 5.46962 * 8 7 6 10 10 C 1.50691 * 119.99629 * 185.46788 * 8 7 6 11 11 H 1.09004 * 109.47173 * 300.00167 * 10 8 7 12 12 C 1.53005 * 109.47487 * 60.00057 * 10 8 7 13 13 N 1.46904 * 109.47196 * 179.97438 * 10 8 7 14 14 C 1.46894 * 111.00127 * 159.78149 * 13 10 8 15 15 H 1.09002 * 109.47066 * 39.76055 * 14 13 10 16 16 C 1.52998 * 109.47131 * 159.75891 * 14 13 10 17 17 C 1.50698 * 109.47529 * 279.76095 * 14 13 10 18 18 H 1.08003 * 119.99960 * 359.97438 * 17 14 13 19 19 C 1.37881 * 120.00597 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99552 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00157 * 179.97438 * 19 17 14 22 22 H 1.48491 * 109.47339 * 60.00152 * 21 19 17 23 23 H 1.48502 * 109.46943 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47001 * 299.99550 * 21 19 17 25 25 C 1.38820 * 119.97227 * 359.49666 * 6 5 4 26 26 N 1.48015 * 120.01107 * 180.23252 * 25 6 5 27 27 O 1.21803 * 120.00362 * 185.37025 * 26 25 6 28 28 O 1.21809 * 119.99966 * 5.36506 * 26 25 6 29 29 C 1.38107 * 119.98584 * 0.24647 * 25 6 5 30 30 H 1.09008 * 109.46848 * 60.00041 * 1 2 3 31 31 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47190 * 300.00113 * 1 2 3 33 33 H 1.08003 * 119.99187 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00895 * 180.25185 * 5 4 3 35 35 H 0.96992 * 120.00228 * 214.81823 * 7 6 5 36 36 H 1.08999 * 109.46693 * 55.01390 * 12 10 8 37 37 H 1.08995 * 109.47141 * 175.01388 * 12 10 8 38 38 H 1.09004 * 109.46965 * 295.01127 * 12 10 8 39 39 H 1.00906 * 110.99643 * 35.83034 * 13 10 8 40 40 H 1.08999 * 109.47191 * 55.07901 * 16 14 13 41 41 H 1.09006 * 109.47394 * 175.07261 * 16 14 13 42 42 H 1.08998 * 109.47167 * 295.07878 * 16 14 13 43 43 H 0.97001 * 120.00084 * 179.97438 * 20 19 17 44 44 H 1.08008 * 119.99610 * 180.02562 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9166 3.6054 0.0054 6 6 3.3034 3.6783 -0.0004 7 7 3.9395 4.9268 -0.0004 8 6 3.3945 5.9608 0.6708 9 8 2.4084 5.7872 1.3553 10 6 4.0105 7.3324 0.5708 11 1 5.0383 7.2963 0.9319 12 6 3.9987 7.7917 -0.8887 13 7 3.2369 8.2774 1.3872 14 6 4.0329 9.4691 1.7095 15 1 4.6217 9.7589 0.8392 16 6 3.0987 10.6166 2.0983 17 6 4.9558 9.1607 2.8602 18 1 4.9511 8.1778 3.3078 19 6 5.8055 10.1337 3.3425 20 7 5.8108 11.3307 2.7979 21 14 6.9489 9.7515 4.7694 22 1 7.8560 8.6380 4.3923 23 1 7.7537 10.9563 5.0950 24 1 6.1463 9.3566 5.9547 25 6 4.0591 2.5139 -0.0005 26 7 5.5373 2.5907 -0.0015 27 8 6.1999 1.5735 -0.1003 28 8 6.0911 3.6711 0.0965 29 6 3.4315 1.2837 0.0000 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2119 2.3180 0.0014 34 1 1.3281 4.5109 0.0100 35 1 4.7721 5.0468 -0.4833 36 1 2.9812 7.7430 -1.2765 37 1 4.3622 8.8174 -0.9497 38 1 4.6443 7.1417 -1.4794 39 1 2.8940 7.8338 2.2262 40 1 2.4489 10.2961 2.9127 41 1 3.6903 11.4733 2.4214 42 1 2.4913 10.8980 1.2381 43 1 6.4083 12.0154 3.1373 44 1 4.0193 0.3776 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646523924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:54 Heat of formation + Delta-G solvation = -55.639441 kcal Electronic energy + Delta-G solvation = -29467.145955 eV Core-core repulsion = 25195.134940 eV Total energy + Delta-G solvation = -4272.011014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.52163 -41.93585 -40.98456 -38.90545 -37.87581 -37.64409 -35.75990 -34.82633 -33.17241 -32.44355 -30.80968 -28.90091 -28.25356 -27.44621 -27.17271 -25.51788 -24.20225 -23.26470 -21.98654 -21.16847 -20.62634 -19.95322 -19.17227 -18.73039 -18.68789 -18.20835 -18.12242 -17.40217 -16.81447 -16.71194 -16.63860 -16.21918 -15.52852 -15.29971 -15.19744 -14.76569 -14.41156 -14.21988 -14.05945 -13.68454 -13.62828 -13.34743 -13.12427 -12.96082 -12.84801 -12.78338 -12.64066 -12.57630 -12.45442 -12.41767 -12.24882 -12.19538 -12.03486 -11.94339 -11.29301 -11.19098 -11.00599 -10.74577 -10.50274 -9.28269 -9.18755 -8.09282 -6.30476 -1.41790 -0.21615 0.09320 0.16354 1.29237 1.38271 1.39277 1.46419 1.59896 2.10890 2.15536 2.38853 3.12198 3.13809 3.33976 3.46382 3.55957 3.67238 3.73394 4.05345 4.18686 4.32575 4.37718 4.40333 4.41266 4.59359 4.76050 4.76163 4.79911 4.86467 4.86804 4.95958 5.04245 5.16132 5.21075 5.25999 5.32462 5.45342 5.63847 5.97390 6.05510 6.08488 6.11716 6.28995 6.35140 6.66704 6.80398 6.91767 7.41046 8.88249 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002930 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.557682 B = 9554.113189 C =10401.803712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.112 4.112 5 C -0.091 4.091 6 C 0.177 3.823 7 N -0.661 5.661 8 C 0.532 3.468 9 O -0.533 6.533 10 C 0.071 3.929 11 H 0.064 0.936 12 C -0.126 4.126 13 N -0.668 5.668 14 C 0.215 3.785 15 H 0.021 0.979 16 C -0.118 4.118 17 C -0.564 4.564 18 H 0.043 0.957 19 C 0.027 3.973 20 N -0.906 5.906 21 Si 0.945 3.055 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.276 1.276 25 C -0.051 4.051 26 N 0.039 4.961 27 O -0.148 6.148 28 O -0.202 6.202 29 C -0.079 4.079 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.428 0.572 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.334 0.666 40 H 0.023 0.977 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.264 0.736 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 -22.234 -10.548 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.075 3.925 4 C -0.131 4.131 5 C -0.112 4.112 6 C 0.079 3.921 7 N -0.312 5.312 8 C 0.321 3.679 9 O -0.408 6.408 10 C -0.043 4.043 11 H 0.082 0.918 12 C -0.184 4.184 13 N -0.300 5.300 14 C 0.107 3.893 15 H 0.039 0.961 16 C -0.176 4.176 17 C -0.603 4.603 18 H 0.061 0.939 19 C -0.174 4.174 20 N -0.545 5.545 21 Si 0.771 3.229 22 H -0.201 1.201 23 H -0.204 1.204 24 H -0.202 1.202 25 C -0.138 4.138 26 N 0.552 4.448 27 O -0.369 6.369 28 O -0.404 6.404 29 C -0.099 4.099 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.204 0.796 34 H 0.175 0.825 35 H 0.271 0.729 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.677 -21.922 -10.598 27.452 hybrid contribution 2.214 0.064 1.479 2.663 sum -10.463 -21.858 -9.119 25.892 Atomic orbital electron populations 1.23576 0.75175 1.06559 1.03087 1.86130 1.24257 1.24490 1.88207 1.18490 0.90447 0.85926 0.97665 1.21939 1.03168 0.89831 0.98196 1.21159 0.90620 1.00391 0.98983 1.17681 0.92691 0.83419 0.98347 1.44021 1.28169 1.07250 1.51772 1.21138 0.83306 0.86450 0.77029 1.90650 1.26580 1.84482 1.39128 1.21422 0.96895 0.87523 0.98438 0.91790 1.21707 1.02941 1.02412 0.91311 1.60956 1.37579 1.07289 1.24154 1.19013 0.89624 0.87012 0.93700 0.96126 1.21545 0.97790 1.00222 0.98082 1.22058 1.22185 0.97537 1.18512 0.93914 1.25558 0.98121 0.94919 0.98777 1.69957 1.38503 1.03619 1.42397 0.85825 0.79198 0.77699 0.80209 1.20083 1.20430 1.20180 1.20592 0.78031 0.95669 1.19495 1.43615 1.03816 1.00236 0.97113 1.94508 1.64910 1.25390 1.52090 1.94473 1.73708 1.16639 1.55566 1.19999 0.93494 0.96263 1.00103 0.90519 0.85680 0.91112 0.79617 0.82497 0.72863 0.91345 0.92034 0.89928 0.84808 0.95784 0.91835 0.95096 0.92631 0.80917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -3.93 10.50 -93.15 -0.98 -4.91 16 3 C 0.12 1.86 6.69 22.50 0.15 2.01 16 4 C -0.11 -1.54 9.03 22.35 0.20 -1.34 16 5 C -0.09 -1.86 8.65 22.38 0.19 -1.66 16 6 C 0.18 4.39 6.24 38.11 0.24 4.63 16 7 N -0.66 -18.19 4.44 -303.39 -1.35 -19.54 16 8 C 0.53 17.58 6.90 87.65 0.60 18.18 16 9 O -0.53 -19.67 13.54 -3.07 -0.04 -19.71 16 10 C 0.07 2.57 2.87 44.17 0.13 2.70 16 11 H 0.06 2.59 7.49 -2.39 -0.02 2.58 16 12 C -0.13 -3.72 9.26 71.98 0.67 -3.06 16 13 N -0.67 -28.63 5.86 -477.17 -2.80 -31.43 16 14 C 0.21 10.67 2.43 44.17 0.11 10.78 16 15 H 0.02 1.10 6.76 -2.39 -0.02 1.09 16 16 C -0.12 -5.78 9.36 71.98 0.67 -5.10 16 17 C -0.56 -30.74 8.02 25.60 0.21 -30.53 16 18 H 0.04 2.36 7.80 -2.91 -0.02 2.34 16 19 C 0.03 1.48 5.29 84.66 0.45 1.93 16 20 N -0.91 -51.08 11.29 21.45 0.24 -50.84 16 21 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 C -0.05 -1.22 6.86 36.48 0.25 -0.97 16 26 N 0.04 1.10 4.45 -46.21 -0.21 0.89 16 27 O -0.15 -4.14 18.46 18.88 0.35 -3.79 16 28 O -0.20 -6.28 16.02 18.87 0.30 -5.98 16 29 C -0.08 -1.48 9.49 22.35 0.21 -1.27 16 30 H 0.08 0.10 7.66 -2.38 -0.02 0.08 16 31 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.07 0.19 7.66 -2.39 -0.02 0.17 16 33 H 0.19 1.16 6.29 -2.91 -0.02 1.14 16 34 H 0.16 3.46 6.53 -2.91 -0.02 3.44 16 35 H 0.43 11.02 6.21 -92.71 -0.58 10.45 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.06 2.03 6.97 -2.39 -0.02 2.01 16 38 H 0.08 1.90 7.85 -2.38 -0.02 1.89 16 39 H 0.33 15.17 7.43 -89.69 -0.67 14.50 16 40 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 3.40 5.95 -2.38 -0.01 3.38 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.17 2.85 7.62 -2.91 -0.02 2.83 16 Total: -1.00 -66.67 369.41 2.57 -64.10 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -0.17 Total: 27.88 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.19 Total: -2.57 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -4.11 Total: -100.91 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.37 Total: -34.39 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.67 2.57 -64.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646523924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.461 kcal (2) G-P(sol) polarization free energy of solvation -66.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds