Wall clock time and date at job start Tue Mar 31 2020 21:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35973 * 116.99484 * 2 1 4 4 C 1.38744 * 119.98958 * 0.24647 * 3 2 1 5 5 C 1.38059 * 120.01544 * 180.25146 * 4 3 2 6 6 C 1.38871 * 119.98458 * 359.50430 * 5 4 3 7 7 N 1.40109 * 120.01098 * 180.22819 * 6 5 4 8 8 C 1.34769 * 120.00277 * 324.42124 * 7 6 5 9 9 O 1.21293 * 120.00439 * 4.24223 * 8 7 6 10 10 C 1.50700 * 119.99982 * 184.24738 * 8 7 6 11 11 H 1.09001 * 109.47327 * 59.99935 * 10 8 7 12 12 C 1.52998 * 109.47295 * 300.00182 * 10 8 7 13 13 N 1.46907 * 109.47370 * 179.97438 * 10 8 7 14 14 C 1.46892 * 111.00179 * 200.33154 * 13 10 8 15 15 H 1.09002 * 109.47502 * 329.57345 * 14 13 10 16 16 C 1.53002 * 109.47443 * 209.56743 * 14 13 10 17 17 C 1.50704 * 109.47022 * 89.57045 * 14 13 10 18 18 H 1.08003 * 119.99630 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00442 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99607 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00261 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.46933 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46928 * 120.00299 * 21 19 17 24 24 H 1.48501 * 109.47223 * 240.00195 * 21 19 17 25 25 C 1.38824 * 119.97050 * 0.24284 * 6 5 4 26 26 N 1.48014 * 120.00858 * 179.97438 * 25 6 5 27 27 O 1.21804 * 119.99998 * 184.86485 * 26 25 6 28 28 O 1.21805 * 119.99839 * 4.86378 * 26 25 6 29 29 C 1.38115 * 119.98457 * 0.02562 * 25 6 5 30 30 H 1.09001 * 109.46895 * 60.00603 * 1 2 3 31 31 H 1.09000 * 109.46881 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47671 * 300.00237 * 1 2 3 33 33 H 1.08001 * 119.98988 * 0.02562 * 4 3 2 34 34 H 1.08004 * 120.00749 * 179.77143 * 5 4 3 35 35 H 0.97001 * 119.99704 * 144.42191 * 7 6 5 36 36 H 1.09011 * 109.46797 * 304.98655 * 12 10 8 37 37 H 1.09001 * 109.47732 * 64.98448 * 12 10 8 38 38 H 1.09003 * 109.47372 * 184.98846 * 12 10 8 39 39 H 1.00900 * 110.99614 * 324.29205 * 13 10 8 40 40 H 1.08998 * 109.46394 * 64.87919 * 16 14 13 41 41 H 1.09001 * 109.47418 * 184.88206 * 16 14 13 42 42 H 1.09000 * 109.46729 * 304.88593 * 16 14 13 43 43 H 0.97000 * 120.00071 * 179.97438 * 20 19 17 44 44 H 1.08000 * 119.99132 * 179.97438 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2903 2.3750 0.0052 5 6 1.9164 3.6054 -0.0001 6 6 3.3031 3.6785 -0.0001 7 7 3.9391 4.9270 -0.0006 8 6 3.3992 5.9580 -0.6800 9 8 2.3245 5.8276 -1.2272 10 6 4.1306 7.2732 -0.7602 11 1 5.0990 7.1219 -1.2371 12 6 4.3381 7.8282 0.6504 13 7 3.3398 8.2261 -1.5505 14 6 4.1830 9.3165 -2.0582 15 1 5.0003 9.4990 -1.3603 16 6 3.3423 10.5867 -2.2024 17 6 4.7464 8.9318 -3.4020 18 1 4.5027 7.9730 -3.8352 19 6 5.5730 9.8039 -4.0783 20 7 5.8701 10.9712 -3.5504 21 14 6.2719 9.3267 -5.7436 22 1 5.7899 7.9715 -6.1128 23 1 5.8256 10.3061 -6.7667 24 1 7.7553 9.3235 -5.6754 25 6 4.0590 2.5141 0.0000 26 7 5.5371 2.5910 -0.0006 27 8 6.1999 1.5730 -0.0900 28 8 6.0907 3.6723 0.0882 29 6 3.4314 1.2838 -0.0003 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2118 2.3180 0.0096 34 1 1.3277 4.5110 0.0002 35 1 4.7680 5.0492 0.4881 36 1 3.3763 7.8962 1.1591 37 1 4.9982 7.1644 1.2087 38 1 4.7873 8.8194 0.5885 39 1 2.8594 7.7591 -2.3049 40 1 3.0064 10.9136 -1.2183 41 1 3.9449 11.3713 -2.6599 42 1 2.4766 10.3798 -2.8316 43 1 6.4518 11.5846 -4.0260 44 1 4.0193 0.3778 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646523925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:03 Heat of formation + Delta-G solvation = -34.995991 kcal Electronic energy + Delta-G solvation = -29452.791425 eV Core-core repulsion = 25181.675578 eV Total energy + Delta-G solvation = -4271.115847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.49395 -40.94200 -40.04435 -37.97126 -36.81430 -35.98888 -34.67006 -33.03125 -32.30566 -30.83264 -29.81148 -27.72034 -27.22648 -26.56514 -25.07675 -24.35885 -23.15188 -22.32982 -20.34142 -19.72953 -19.71369 -18.90391 -18.10470 -17.73792 -17.47297 -17.23744 -16.66459 -16.34874 -16.22924 -15.31409 -14.86349 -14.76855 -14.56493 -14.36000 -13.92552 -13.45577 -13.39267 -13.09359 -13.05322 -12.54585 -12.08228 -11.90841 -11.89851 -11.79611 -11.71510 -11.42661 -11.32944 -11.30396 -11.23755 -10.99446 -10.82545 -10.34657 -10.28937 -10.17001 -10.05992 -10.00351 -9.55705 -9.11707 -8.43552 -8.38816 -7.42900 -6.04438 -4.16996 -0.43968 0.63726 1.06769 1.12784 2.49266 2.60723 2.78203 3.03022 3.25588 3.34197 3.38351 4.02416 4.18414 4.25907 4.37857 4.48899 4.62863 4.64819 4.71916 4.94936 5.02872 5.10117 5.20873 5.24449 5.45395 5.52975 5.54096 5.69439 5.75348 6.01733 6.12427 6.22108 6.29662 6.53486 6.67816 6.83450 7.11516 7.14504 7.25967 7.41825 7.46826 7.70912 7.99375 8.03225 8.08854 8.22824 8.57131 8.94499 9.51504 10.96783 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.002902 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.458764 B = 9645.899682 C =10153.884261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.109 3.891 4 C -0.133 4.133 5 C -0.087 4.087 6 C 0.198 3.802 7 N -0.671 5.671 8 C 0.523 3.477 9 O -0.510 6.510 10 C 0.076 3.924 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.674 5.674 14 C 0.208 3.792 15 H 0.036 0.964 16 C -0.124 4.124 17 C -0.548 4.548 18 H 0.054 0.946 19 C 0.069 3.931 20 N -0.884 5.884 21 Si 0.889 3.111 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.044 4.044 26 N 0.040 4.960 27 O -0.150 6.150 28 O -0.169 6.169 29 C -0.076 4.076 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.427 0.573 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.343 0.657 40 H 0.013 0.987 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 -19.331 11.571 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.152 4.152 5 C -0.107 4.107 6 C 0.099 3.901 7 N -0.323 5.323 8 C 0.312 3.688 9 O -0.383 6.383 10 C -0.038 4.038 11 H 0.099 0.901 12 C -0.193 4.193 13 N -0.307 5.307 14 C 0.100 3.900 15 H 0.054 0.946 16 C -0.183 4.183 17 C -0.587 4.587 18 H 0.072 0.928 19 C -0.134 4.134 20 N -0.523 5.523 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.131 4.131 26 N 0.556 4.444 27 O -0.368 6.368 28 O -0.378 6.378 29 C -0.096 4.096 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.032 0.968 41 H 0.103 0.897 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.667 -18.971 11.668 24.694 hybrid contribution 1.499 -0.549 -1.564 2.235 sum -9.168 -19.519 10.104 23.815 Atomic orbital electron populations 1.23189 0.77445 1.04674 1.01809 1.86110 1.21975 1.25391 1.88787 1.18482 0.90901 0.85126 0.99267 1.21646 1.01466 0.91319 1.00780 1.21286 0.91555 0.99585 0.98307 1.17525 0.91911 0.84074 0.96619 1.44376 1.28908 1.07409 1.51650 1.21626 0.85834 0.85507 0.75818 1.90644 1.20930 1.82505 1.44257 1.21392 0.96960 0.87518 0.97934 0.90136 1.21777 1.01579 1.02372 0.93610 1.60997 1.29441 1.11179 1.29124 1.19238 0.90204 0.87051 0.93478 0.94607 1.21674 0.98858 1.00205 0.97530 1.21876 1.29564 1.02481 1.04760 0.92829 1.24908 0.95924 0.94853 0.97707 1.69880 1.36136 1.07951 1.38284 0.86584 0.78869 0.78609 0.84234 1.19933 1.20880 1.20884 1.20553 0.79371 0.94943 1.18224 1.43340 1.02954 1.00493 0.97571 1.94543 1.64182 1.25357 1.52741 1.94415 1.72900 1.16292 1.54160 1.19803 0.92523 0.96755 1.00532 0.92101 0.87608 0.92202 0.83216 0.81437 0.72932 0.92204 0.92865 0.90412 0.83749 0.96784 0.89732 0.95636 0.92842 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.47 10.50 -19.65 -0.21 -2.68 16 3 C 0.11 1.00 6.69 -39.22 -0.26 0.73 16 4 C -0.13 -1.13 9.03 -39.46 -0.36 -1.49 16 5 C -0.09 -0.97 8.69 -39.41 -0.34 -1.31 16 6 C 0.20 2.54 6.28 -83.62 -0.53 2.01 16 7 N -0.67 -9.19 4.60 -9.83 -0.05 -9.23 16 8 C 0.52 8.56 7.02 -10.99 -0.08 8.48 16 9 O -0.51 -9.30 13.22 5.55 0.07 -9.23 16 10 C 0.08 1.35 2.87 -68.86 -0.20 1.15 16 11 H 0.08 1.56 7.85 -51.93 -0.41 1.15 16 12 C -0.14 -2.01 9.23 37.16 0.34 -1.67 16 13 N -0.67 -14.26 5.90 -102.17 -0.60 -14.86 16 14 C 0.21 5.07 2.35 -68.87 -0.16 4.91 16 15 H 0.04 0.93 6.77 -51.93 -0.35 0.58 16 16 C -0.12 -3.02 9.36 37.16 0.35 -2.67 16 17 C -0.55 -14.75 8.47 -34.44 -0.29 -15.04 16 18 H 0.05 1.46 7.67 -52.48 -0.40 1.06 16 19 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 20 N -0.88 -24.70 11.29 55.43 0.63 -24.08 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.04 -0.54 6.86 -79.78 -0.55 -1.09 16 26 N 0.04 0.56 4.45 34.05 0.15 0.71 16 27 O -0.15 -2.14 18.46 -29.46 -0.54 -2.68 16 28 O -0.17 -2.50 15.95 -29.46 -0.47 -2.97 16 29 C -0.08 -0.79 9.49 -39.46 -0.37 -1.16 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 31 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 33 H 0.15 0.83 6.29 -52.49 -0.33 0.50 16 34 H 0.17 2.00 6.27 -52.48 -0.33 1.67 16 35 H 0.43 5.38 5.69 -40.82 -0.23 5.14 16 36 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.05 0.63 7.62 -51.93 -0.40 0.23 16 38 H 0.08 1.26 7.09 -51.93 -0.37 0.90 16 39 H 0.34 7.68 7.19 -39.29 -0.28 7.40 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 2.23 5.95 -51.93 -0.31 1.92 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.16 1.49 7.62 -52.49 -0.40 1.09 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -30.69 368.86 -7.46 -38.15 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.43 Total: 9.34 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.55 Total: -4.28 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.13 Total: -47.46 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.15 Total: -17.56 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.69 -7.46 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646523925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.156 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds