Wall clock time and date at job start Tue Mar 31 2020 21:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35973 * 116.99484 * 2 1 4 4 C 1.38744 * 119.98958 * 0.24647 * 3 2 1 5 5 C 1.38059 * 120.01544 * 180.25146 * 4 3 2 6 6 C 1.38871 * 119.98458 * 359.50430 * 5 4 3 7 7 N 1.40109 * 120.01098 * 180.22819 * 6 5 4 8 8 C 1.34769 * 120.00277 * 324.42124 * 7 6 5 9 9 O 1.21293 * 120.00439 * 4.24223 * 8 7 6 10 10 C 1.50700 * 119.99982 * 184.24738 * 8 7 6 11 11 H 1.09001 * 109.47327 * 59.99935 * 10 8 7 12 12 C 1.52998 * 109.47295 * 300.00182 * 10 8 7 13 13 N 1.46907 * 109.47370 * 179.97438 * 10 8 7 14 14 C 1.46892 * 111.00179 * 200.33154 * 13 10 8 15 15 H 1.09002 * 109.47502 * 329.57345 * 14 13 10 16 16 C 1.53002 * 109.47443 * 209.56743 * 14 13 10 17 17 C 1.50704 * 109.47022 * 89.57045 * 14 13 10 18 18 H 1.08003 * 119.99630 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00442 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99607 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00261 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.46933 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46928 * 120.00299 * 21 19 17 24 24 H 1.48501 * 109.47223 * 240.00195 * 21 19 17 25 25 C 1.38824 * 119.97050 * 0.24284 * 6 5 4 26 26 N 1.48014 * 120.00858 * 179.97438 * 25 6 5 27 27 O 1.21804 * 119.99998 * 184.86485 * 26 25 6 28 28 O 1.21805 * 119.99839 * 4.86378 * 26 25 6 29 29 C 1.38115 * 119.98457 * 0.02562 * 25 6 5 30 30 H 1.09001 * 109.46895 * 60.00603 * 1 2 3 31 31 H 1.09000 * 109.46881 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47671 * 300.00237 * 1 2 3 33 33 H 1.08001 * 119.98988 * 0.02562 * 4 3 2 34 34 H 1.08004 * 120.00749 * 179.77143 * 5 4 3 35 35 H 0.97001 * 119.99704 * 144.42191 * 7 6 5 36 36 H 1.09011 * 109.46797 * 304.98655 * 12 10 8 37 37 H 1.09001 * 109.47732 * 64.98448 * 12 10 8 38 38 H 1.09003 * 109.47372 * 184.98846 * 12 10 8 39 39 H 1.00900 * 110.99614 * 324.29205 * 13 10 8 40 40 H 1.08998 * 109.46394 * 64.87919 * 16 14 13 41 41 H 1.09001 * 109.47418 * 184.88206 * 16 14 13 42 42 H 1.09000 * 109.46729 * 304.88593 * 16 14 13 43 43 H 0.97000 * 120.00071 * 179.97438 * 20 19 17 44 44 H 1.08000 * 119.99132 * 179.97438 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2903 2.3750 0.0052 5 6 1.9164 3.6054 -0.0001 6 6 3.3031 3.6785 -0.0001 7 7 3.9391 4.9270 -0.0006 8 6 3.3992 5.9580 -0.6800 9 8 2.3245 5.8276 -1.2272 10 6 4.1306 7.2732 -0.7602 11 1 5.0990 7.1219 -1.2371 12 6 4.3381 7.8282 0.6504 13 7 3.3398 8.2261 -1.5505 14 6 4.1830 9.3165 -2.0582 15 1 5.0003 9.4990 -1.3603 16 6 3.3423 10.5867 -2.2024 17 6 4.7464 8.9318 -3.4020 18 1 4.5027 7.9730 -3.8352 19 6 5.5730 9.8039 -4.0783 20 7 5.8701 10.9712 -3.5504 21 14 6.2719 9.3267 -5.7436 22 1 5.7899 7.9715 -6.1128 23 1 5.8256 10.3061 -6.7667 24 1 7.7553 9.3235 -5.6754 25 6 4.0590 2.5141 0.0000 26 7 5.5371 2.5910 -0.0006 27 8 6.1999 1.5730 -0.0900 28 8 6.0907 3.6723 0.0882 29 6 3.4314 1.2838 -0.0003 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2118 2.3180 0.0096 34 1 1.3277 4.5110 0.0002 35 1 4.7680 5.0492 0.4881 36 1 3.3763 7.8962 1.1591 37 1 4.9982 7.1644 1.2087 38 1 4.7873 8.8194 0.5885 39 1 2.8594 7.7591 -2.3049 40 1 3.0064 10.9136 -1.2183 41 1 3.9449 11.3713 -2.6599 42 1 2.4766 10.3798 -2.8316 43 1 6.4518 11.5846 -4.0260 44 1 4.0193 0.3778 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646523925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:01 Heat of formation + Delta-G solvation = -54.825273 kcal Electronic energy + Delta-G solvation = -29453.651287 eV Core-core repulsion = 25181.675578 eV Total energy + Delta-G solvation = -4271.975709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.53114 -41.94764 -40.99119 -38.90354 -37.89081 -37.64068 -35.76683 -34.85874 -33.16748 -32.44108 -30.81012 -28.94044 -28.25278 -27.45131 -27.16994 -25.49217 -24.21964 -23.29592 -21.98981 -21.16393 -20.61058 -19.96690 -19.20859 -18.79069 -18.73779 -18.19044 -18.15342 -17.35600 -16.82383 -16.71038 -16.69551 -16.10762 -15.50592 -15.35248 -15.21299 -14.81483 -14.42481 -14.20953 -14.06609 -13.66486 -13.63633 -13.33797 -13.14143 -12.97148 -12.85766 -12.79051 -12.64077 -12.56825 -12.45435 -12.42967 -12.26404 -12.20160 -12.04451 -11.97947 -11.27671 -11.13039 -11.00513 -10.73898 -10.51989 -9.29573 -9.18617 -8.11158 -6.31687 -1.41759 -0.21013 0.09490 0.15972 1.26643 1.35216 1.38480 1.47901 1.60245 2.10018 2.15002 2.37839 3.10899 3.14524 3.33906 3.46563 3.55056 3.66617 3.73490 4.04032 4.17285 4.31989 4.34774 4.40743 4.41466 4.60754 4.76076 4.76143 4.79316 4.86059 4.87448 4.94336 5.04948 5.17194 5.23215 5.26269 5.33067 5.44018 5.62686 5.99058 6.06103 6.08008 6.10319 6.29228 6.35554 6.66360 6.79597 6.92305 7.39816 8.87504 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.002902 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.458764 B = 9645.899682 C =10153.884261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.114 4.114 5 C -0.092 4.092 6 C 0.173 3.827 7 N -0.661 5.661 8 C 0.530 3.470 9 O -0.532 6.532 10 C 0.071 3.929 11 H 0.062 0.938 12 C -0.128 4.128 13 N -0.669 5.669 14 C 0.214 3.786 15 H 0.019 0.981 16 C -0.116 4.116 17 C -0.562 4.562 18 H 0.043 0.957 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.948 3.052 22 H -0.277 1.277 23 H -0.277 1.277 24 H -0.278 1.278 25 C -0.050 4.050 26 N 0.040 4.960 27 O -0.153 6.153 28 O -0.195 6.195 29 C -0.079 4.079 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.186 0.814 34 H 0.161 0.839 35 H 0.430 0.570 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.335 0.665 40 H 0.029 0.971 41 H 0.062 0.938 42 H 0.023 0.977 43 H 0.264 0.736 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 -21.424 12.008 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.075 3.925 4 C -0.133 4.133 5 C -0.112 4.112 6 C 0.075 3.925 7 N -0.314 5.314 8 C 0.319 3.681 9 O -0.407 6.407 10 C -0.043 4.043 11 H 0.080 0.920 12 C -0.186 4.186 13 N -0.301 5.301 14 C 0.106 3.894 15 H 0.037 0.963 16 C -0.174 4.174 17 C -0.601 4.601 18 H 0.061 0.939 19 C -0.175 4.175 20 N -0.545 5.545 21 Si 0.774 3.226 22 H -0.202 1.202 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.137 4.137 26 N 0.553 4.447 27 O -0.373 6.373 28 O -0.399 6.399 29 C -0.099 4.099 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.095 0.905 33 H 0.203 0.797 34 H 0.179 0.821 35 H 0.275 0.725 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.153 0.847 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.144 -21.065 12.137 27.176 hybrid contribution 1.837 -0.102 -1.651 2.472 sum -10.307 -21.167 10.486 25.773 Atomic orbital electron populations 1.23573 0.75184 1.06556 1.03076 1.86133 1.24253 1.24499 1.88200 1.18508 0.90470 0.85929 0.97606 1.21962 1.03166 0.89894 0.98292 1.21306 0.90760 1.00485 0.98672 1.17705 0.92680 0.83411 0.98703 1.44088 1.28821 1.07413 1.51038 1.21149 0.85413 0.85498 0.76035 1.90629 1.21769 1.82878 1.45469 1.21453 0.95730 0.88319 0.98750 0.91999 1.21738 1.02692 1.02046 0.92108 1.60926 1.29188 1.11479 1.28496 1.19027 0.90011 0.88224 0.92130 0.96348 1.21533 0.98226 0.99507 0.98141 1.22113 1.29977 1.02115 1.05939 0.93882 1.25578 0.96283 0.94891 1.00758 1.69975 1.36511 1.08569 1.39452 0.85674 0.78278 0.78089 0.80581 1.20192 1.20249 1.20349 1.20607 0.78039 0.95654 1.19403 1.43591 1.03783 1.00194 0.97143 1.94518 1.64865 1.25298 1.52571 1.94405 1.73581 1.16518 1.55417 1.19998 0.93478 0.96273 1.00140 0.91137 0.85669 0.90525 0.79677 0.82123 0.72510 0.91299 0.89718 0.91974 0.84704 0.95159 0.91959 0.95784 0.92624 0.80909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.16 16 2 O -0.32 -4.00 10.50 -93.24 -0.98 -4.98 16 3 C 0.12 1.89 6.69 22.50 0.15 2.04 16 4 C -0.11 -1.60 9.03 22.35 0.20 -1.40 16 5 C -0.09 -1.90 8.69 22.38 0.19 -1.71 16 6 C 0.17 4.31 6.28 38.11 0.24 4.55 16 7 N -0.66 -18.06 4.60 -303.40 -1.39 -19.45 16 8 C 0.53 17.43 7.02 87.66 0.62 18.05 16 9 O -0.53 -19.43 13.22 -3.07 -0.04 -19.47 16 10 C 0.07 2.57 2.87 44.17 0.13 2.70 16 11 H 0.06 2.49 7.85 -2.39 -0.02 2.47 16 12 C -0.13 -3.77 9.23 71.98 0.66 -3.10 16 13 N -0.67 -28.79 5.90 -477.15 -2.81 -31.61 16 14 C 0.21 10.70 2.35 44.17 0.10 10.80 16 15 H 0.02 0.99 6.77 -2.39 -0.02 0.97 16 16 C -0.12 -5.68 9.36 71.98 0.67 -5.01 16 17 C -0.56 -30.86 8.47 25.60 0.22 -30.65 16 18 H 0.04 2.40 7.67 -2.91 -0.02 2.38 16 19 C 0.03 1.41 5.29 84.66 0.45 1.85 16 20 N -0.91 -51.21 11.29 21.45 0.24 -50.96 16 21 Si 0.95 43.96 29.54 68.60 2.03 45.98 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C -0.05 -1.20 6.86 36.49 0.25 -0.95 16 26 N 0.04 1.11 4.45 -46.20 -0.21 0.91 16 27 O -0.15 -4.32 18.46 18.88 0.35 -3.97 16 28 O -0.20 -5.88 15.95 18.88 0.30 -5.58 16 29 C -0.08 -1.50 9.49 22.35 0.21 -1.29 16 30 H 0.07 0.21 7.67 -2.39 -0.02 0.19 16 31 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.08 0.12 7.65 -2.39 -0.02 0.10 16 33 H 0.19 1.22 6.29 -2.91 -0.02 1.20 16 34 H 0.16 3.64 6.27 -2.91 -0.02 3.62 16 35 H 0.43 10.88 5.69 -92.71 -0.53 10.35 16 36 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.08 1.93 7.62 -2.39 -0.02 1.91 16 38 H 0.06 2.03 7.09 -2.39 -0.02 2.02 16 39 H 0.33 15.31 7.19 -89.69 -0.65 14.66 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 3.34 5.95 -2.39 -0.01 3.33 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.17 2.88 7.62 -2.91 -0.02 2.85 16 Total: -1.00 -66.71 368.86 2.59 -64.11 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.10 Total: 27.97 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.21 Total: -2.96 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -4.17 Total: -101.12 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.37 Total: -34.00 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.71 2.59 -64.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646523925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.290 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds