Wall clock time and date at job start Tue Mar 31 2020 21:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46770 * 2 1 4 4 C 1.37538 * 127.17803 * 274.58835 * 3 2 1 5 5 C 1.47824 * 126.48489 * 359.94090 * 4 3 2 6 6 C 1.35068 * 123.00897 * 179.73197 * 5 4 3 7 7 S 1.76171 * 107.86999 * 179.97438 * 6 5 4 8 8 C 1.70911 * 90.46089 * 0.27604 * 7 6 5 9 9 N 1.28756 * 110.55238 * 359.83989 * 8 7 6 10 10 N 1.31276 * 107.03673 * 179.97438 * 4 3 2 11 11 N 1.28507 * 109.95864 * 359.72411 * 10 4 3 12 12 C 1.31232 * 110.11108 * 0.45788 * 11 10 4 13 13 N 1.38567 * 126.37078 * 179.81786 * 12 11 10 14 14 C 1.46899 * 110.99866 * 43.54213 * 13 12 11 15 15 C 1.50701 * 109.47304 * 72.07483 * 14 13 12 16 16 H 1.08005 * 119.99732 * 5.63080 * 15 14 13 17 17 C 1.37874 * 120.00202 * 185.63004 * 15 14 13 18 18 N 1.31514 * 119.99709 * 354.31469 * 17 15 14 19 19 Si 1.86791 * 120.00162 * 174.31545 * 17 15 14 20 20 H 1.48501 * 109.47237 * 94.96989 * 19 17 15 21 21 H 1.48503 * 109.47415 * 214.96869 * 19 17 15 22 22 H 1.48506 * 109.47328 * 334.97110 * 19 17 15 23 23 C 1.46903 * 111.00143 * 279.58589 * 13 12 11 24 24 C 1.52999 * 109.46994 * 190.00436 * 23 13 12 25 25 O 1.42900 * 109.47277 * 64.99803 * 24 23 13 26 26 C 1.42900 * 113.99715 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47560 * 304.67287 * 1 2 3 28 28 H 1.08996 * 109.47162 * 64.67934 * 1 2 3 29 29 H 1.09001 * 109.46873 * 184.67323 * 1 2 3 30 30 H 1.09001 * 109.47756 * 240.00204 * 2 1 3 31 31 H 1.08997 * 109.47342 * 119.99325 * 2 1 3 32 32 H 1.08004 * 126.06678 * 0.03705 * 6 5 4 33 33 H 1.08003 * 124.71787 * 179.81477 * 8 7 6 34 34 H 1.09000 * 109.46802 * 192.06947 * 14 13 12 35 35 H 1.08996 * 109.47310 * 312.06718 * 14 13 12 36 36 H 0.97001 * 119.99856 * 180.02562 * 18 17 15 37 37 H 1.08999 * 109.46794 * 69.99785 * 23 13 12 38 38 H 1.08999 * 109.47021 * 310.00249 * 23 13 12 39 39 H 1.09004 * 109.46872 * 185.00285 * 24 23 13 40 40 H 1.09002 * 109.47007 * 304.99923 * 24 23 13 41 41 H 1.09004 * 109.46797 * 180.02562 * 26 25 24 42 42 H 1.09004 * 109.46956 * 300.00259 * 26 25 24 43 43 H 1.08998 * 109.46969 * 60.00341 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2126 2.1941 -1.0923 5 6 1.9682 1.8395 -2.5064 6 6 2.1791 2.6982 -3.5274 7 16 1.7635 1.8695 -5.0255 8 6 1.3421 0.4649 -4.1477 9 7 1.5159 0.6514 -2.8856 10 7 2.6569 3.3443 -0.6417 11 7 2.7467 3.3082 0.6397 12 6 2.3750 2.1311 1.0851 13 7 2.3443 1.7259 2.4099 14 6 1.7763 2.7743 3.2680 15 6 0.2923 2.8731 3.0251 16 1 -0.1967 2.1633 2.3742 17 6 -0.4411 3.8694 3.6337 18 7 0.1309 4.6639 4.5119 19 14 -2.2470 4.0908 3.2109 20 1 -3.0801 3.3611 4.2002 21 1 -2.5899 5.5353 3.2447 22 1 -2.5069 3.5520 1.8517 23 6 3.6828 1.3351 2.8721 24 6 3.5733 0.6639 4.2426 25 8 2.8446 -0.5589 4.1174 26 6 2.6850 -1.2689 5.3472 27 1 -0.3634 0.5846 0.8451 28 1 -0.3633 0.4395 -0.9289 29 1 -0.3633 -1.0243 0.0837 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.5396 3.7126 -3.4409 33 1 0.9801 -0.4515 -4.5901 34 1 1.9575 2.5257 4.3136 35 1 2.2471 3.7293 3.0348 36 1 -0.3851 5.3646 4.9403 37 1 4.3131 2.2209 2.9505 38 1 4.1237 0.6374 2.1601 39 1 4.5722 0.4542 4.6253 40 1 3.0523 1.3284 4.9320 41 1 2.1222 -2.1850 5.1674 42 1 3.6656 -1.5188 5.7523 43 1 2.1458 -0.6447 6.0597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650299486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:51 Heat of formation + Delta-G solvation = 102.579705 kcal Electronic energy + Delta-G solvation = -27781.516858 eV Core-core repulsion = 23991.412363 eV Total energy + Delta-G solvation = -3790.104495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31354 -39.66562 -37.95333 -36.24673 -35.04866 -32.61119 -31.59249 -30.11970 -29.69190 -28.20852 -26.70432 -25.77936 -25.61711 -23.73917 -22.96618 -22.07140 -21.67560 -19.79765 -19.37405 -18.28741 -16.97296 -16.42936 -15.95454 -15.93411 -15.69116 -15.54838 -14.93476 -14.65223 -14.55924 -14.35808 -14.28921 -13.62267 -13.36407 -13.29197 -13.02895 -12.62491 -12.18004 -11.97711 -11.90021 -11.77445 -11.52052 -11.32639 -11.00898 -10.88524 -10.83681 -10.67230 -10.49237 -10.12513 -10.00071 -9.87839 -9.77640 -9.60970 -9.47829 -9.35510 -9.23332 -8.41732 -8.19105 -7.58545 -6.03540 -4.02695 0.47666 1.16570 1.47777 1.88594 2.80940 2.95499 3.31610 3.38344 3.43122 3.61587 3.78032 4.12409 4.37590 4.56613 4.73412 5.01606 5.22278 5.28880 5.31624 5.36533 5.45241 5.47438 5.58722 5.64621 5.65568 5.65963 5.76546 5.87598 5.91113 5.96658 5.99632 6.05689 6.09689 6.30791 6.54758 6.64273 6.87097 7.21723 7.41188 7.46265 7.51491 7.67575 8.01244 8.10939 8.37809 8.99830 9.30215 9.59863 11.07542 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004288 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.586369 B = 6528.695857 C = 7922.074715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 N -0.452 5.452 4 C 0.211 3.789 5 C 0.150 3.850 6 C -0.211 4.211 7 S 0.133 5.867 8 C 0.023 3.977 9 N -0.460 5.460 10 N -0.265 5.265 11 N -0.307 5.307 12 C 0.408 3.592 13 N -0.459 5.459 14 C 0.198 3.802 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.068 3.932 24 C 0.067 3.933 25 O -0.375 6.375 26 C 0.033 3.967 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.190 0.810 33 H 0.203 0.797 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -12.066 -13.157 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.004 4.004 3 N -0.145 5.145 4 C -0.055 4.055 5 C 0.018 3.982 6 C -0.353 4.353 7 S 0.384 5.616 8 C -0.276 4.276 9 N -0.175 5.175 10 N -0.109 5.109 11 N -0.152 5.152 12 C 0.053 3.947 13 N -0.186 5.186 14 C 0.075 3.925 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.060 4.060 24 C -0.010 4.010 25 O -0.294 6.294 26 C -0.064 4.064 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.207 0.793 33 H 0.220 0.780 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.537 -11.221 -13.798 18.627 hybrid contribution -1.009 -0.264 1.046 1.477 sum 4.528 -11.485 -12.752 17.749 Atomic orbital electron populations 1.22019 0.94064 1.02525 1.03107 1.21801 0.96060 0.78384 1.04194 1.46413 1.48335 1.13970 1.05733 1.21203 1.08334 0.89705 0.86259 1.17085 1.02299 0.88926 0.89868 1.27058 1.09096 1.05872 0.93271 1.83986 1.59483 1.07326 1.10765 1.28232 1.04355 1.03623 0.91417 1.66133 1.14732 1.20642 1.15955 1.74243 1.16264 1.16351 1.04086 1.74629 1.21803 1.16862 1.01917 1.22423 0.96985 0.86751 0.88576 1.59031 1.20268 1.43649 0.95646 1.20001 0.95179 0.86570 0.90714 1.20975 0.91996 1.13028 1.28267 0.92391 1.24864 0.98464 0.95642 0.94953 1.69939 1.36569 1.19733 1.26985 0.86554 0.85187 0.77419 0.78717 1.20683 1.21067 1.20069 1.22077 0.89375 0.98620 0.95937 1.22638 0.94765 0.86399 0.97216 1.87948 1.76152 1.35057 1.30204 1.22664 0.99531 0.96647 0.87519 0.90964 0.92562 0.91228 0.88737 0.88438 0.79271 0.78019 0.93936 0.95849 0.92859 0.92323 0.91310 0.93378 0.91580 0.90180 0.94969 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.12 1.93 6.33 -4.04 -0.03 1.90 16 3 N -0.45 -8.94 2.84 -114.63 -0.33 -9.26 16 4 C 0.21 4.14 7.87 -153.80 -1.21 2.93 16 5 C 0.15 2.33 6.69 -84.72 -0.57 1.77 16 6 C -0.21 -2.67 11.12 29.61 0.33 -2.34 16 7 S 0.13 1.14 23.21 -107.50 -2.49 -1.35 16 8 C 0.02 0.22 12.19 51.47 0.63 0.84 16 9 N -0.46 -6.15 8.40 -12.36 -0.10 -6.25 16 10 N -0.27 -5.87 12.11 32.58 0.39 -5.48 16 11 N -0.31 -7.45 11.48 30.35 0.35 -7.10 16 12 C 0.41 9.17 6.10 -318.62 -1.94 7.23 16 13 N -0.46 -10.12 4.42 -175.82 -0.78 -10.89 16 14 C 0.20 5.16 4.55 -4.98 -0.02 5.14 16 15 C -0.50 -14.39 8.83 -34.44 -0.30 -14.70 16 16 H 0.06 1.69 7.08 -52.48 -0.37 1.31 16 17 C 0.06 1.81 5.45 -17.82 -0.10 1.71 16 18 N -0.89 -26.65 13.30 55.43 0.74 -25.91 16 19 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.07 1.23 5.28 -3.82 -0.02 1.21 16 24 C 0.07 1.09 6.02 37.16 0.22 1.31 16 25 O -0.38 -6.33 10.65 -35.23 -0.38 -6.70 16 26 C 0.03 0.43 11.01 101.05 1.11 1.55 16 27 H 0.07 1.42 7.40 -51.93 -0.38 1.04 16 28 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.37 6.74 -51.93 -0.35 1.02 16 31 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 32 H 0.19 2.28 8.06 -52.48 -0.42 1.86 16 33 H 0.20 1.08 8.06 -52.48 -0.42 0.65 16 34 H 0.04 1.12 5.87 -51.93 -0.30 0.82 16 35 H 0.02 0.68 7.51 -51.93 -0.39 0.29 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.06 1.06 8.12 -51.93 -0.42 0.63 16 38 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.19 6.10 -51.93 -0.32 0.87 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -34.63 377.09 -9.34 -43.97 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.89 Total: -0.50 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -1.52 Total: 6.34 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 0.27 Total: -64.90 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.38 Total: -6.70 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.49 Total: -1.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.63 -9.34 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650299486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.550 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds