Wall clock time and date at job start Tue Mar 31 2020 21:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46770 * 2 1 4 4 C 1.37538 * 127.17803 * 274.58835 * 3 2 1 5 5 C 1.47824 * 126.48489 * 359.94090 * 4 3 2 6 6 C 1.35068 * 123.00897 * 179.73197 * 5 4 3 7 7 S 1.76171 * 107.86999 * 179.97438 * 6 5 4 8 8 C 1.70911 * 90.46089 * 0.27604 * 7 6 5 9 9 N 1.28756 * 110.55238 * 359.83989 * 8 7 6 10 10 N 1.31276 * 107.03673 * 179.97438 * 4 3 2 11 11 N 1.28507 * 109.95864 * 359.72411 * 10 4 3 12 12 C 1.31232 * 110.11108 * 0.45788 * 11 10 4 13 13 N 1.38567 * 126.37078 * 179.81786 * 12 11 10 14 14 C 1.46899 * 110.99866 * 43.54213 * 13 12 11 15 15 C 1.50701 * 109.47304 * 72.07483 * 14 13 12 16 16 H 1.08005 * 119.99732 * 5.63080 * 15 14 13 17 17 C 1.37874 * 120.00202 * 185.63004 * 15 14 13 18 18 N 1.31514 * 119.99709 * 354.31469 * 17 15 14 19 19 Si 1.86791 * 120.00162 * 174.31545 * 17 15 14 20 20 H 1.48501 * 109.47237 * 94.96989 * 19 17 15 21 21 H 1.48503 * 109.47415 * 214.96869 * 19 17 15 22 22 H 1.48506 * 109.47328 * 334.97110 * 19 17 15 23 23 C 1.46903 * 111.00143 * 279.58589 * 13 12 11 24 24 C 1.52999 * 109.46994 * 190.00436 * 23 13 12 25 25 O 1.42900 * 109.47277 * 64.99803 * 24 23 13 26 26 C 1.42900 * 113.99715 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47560 * 304.67287 * 1 2 3 28 28 H 1.08996 * 109.47162 * 64.67934 * 1 2 3 29 29 H 1.09001 * 109.46873 * 184.67323 * 1 2 3 30 30 H 1.09001 * 109.47756 * 240.00204 * 2 1 3 31 31 H 1.08997 * 109.47342 * 119.99325 * 2 1 3 32 32 H 1.08004 * 126.06678 * 0.03705 * 6 5 4 33 33 H 1.08003 * 124.71787 * 179.81477 * 8 7 6 34 34 H 1.09000 * 109.46802 * 192.06947 * 14 13 12 35 35 H 1.08996 * 109.47310 * 312.06718 * 14 13 12 36 36 H 0.97001 * 119.99856 * 180.02562 * 18 17 15 37 37 H 1.08999 * 109.46794 * 69.99785 * 23 13 12 38 38 H 1.08999 * 109.47021 * 310.00249 * 23 13 12 39 39 H 1.09004 * 109.46872 * 185.00285 * 24 23 13 40 40 H 1.09002 * 109.47007 * 304.99923 * 24 23 13 41 41 H 1.09004 * 109.46797 * 180.02562 * 26 25 24 42 42 H 1.09004 * 109.46956 * 300.00259 * 26 25 24 43 43 H 1.08998 * 109.46969 * 60.00341 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2126 2.1941 -1.0923 5 6 1.9682 1.8395 -2.5064 6 6 2.1791 2.6982 -3.5274 7 16 1.7635 1.8695 -5.0255 8 6 1.3421 0.4649 -4.1477 9 7 1.5159 0.6514 -2.8856 10 7 2.6569 3.3443 -0.6417 11 7 2.7467 3.3082 0.6397 12 6 2.3750 2.1311 1.0851 13 7 2.3443 1.7259 2.4099 14 6 1.7763 2.7743 3.2680 15 6 0.2923 2.8731 3.0251 16 1 -0.1967 2.1633 2.3742 17 6 -0.4411 3.8694 3.6337 18 7 0.1309 4.6639 4.5119 19 14 -2.2470 4.0908 3.2109 20 1 -3.0801 3.3611 4.2002 21 1 -2.5899 5.5353 3.2447 22 1 -2.5069 3.5520 1.8517 23 6 3.6828 1.3351 2.8721 24 6 3.5733 0.6639 4.2426 25 8 2.8446 -0.5589 4.1174 26 6 2.6850 -1.2689 5.3472 27 1 -0.3634 0.5846 0.8451 28 1 -0.3633 0.4395 -0.9289 29 1 -0.3633 -1.0243 0.0837 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.5396 3.7126 -3.4409 33 1 0.9801 -0.4515 -4.5901 34 1 1.9575 2.5257 4.3136 35 1 2.2471 3.7293 3.0348 36 1 -0.3851 5.3646 4.9403 37 1 4.3131 2.2209 2.9505 38 1 4.1237 0.6374 2.1601 39 1 4.5722 0.4542 4.6253 40 1 3.0523 1.3284 4.9320 41 1 2.1222 -2.1850 5.1674 42 1 3.6656 -1.5188 5.7523 43 1 2.1458 -0.6447 6.0597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650299486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:49 Heat of formation + Delta-G solvation = 79.815239 kcal Electronic energy + Delta-G solvation = -27782.503999 eV Core-core repulsion = 23991.412363 eV Total energy + Delta-G solvation = -3791.091636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.88490 -40.63013 -39.38747 -37.76586 -36.51935 -34.78185 -32.78348 -31.54220 -31.10286 -29.87908 -28.36844 -26.92014 -26.69578 -25.21291 -24.88960 -23.40997 -23.06404 -21.29963 -20.63943 -19.31234 -18.77859 -18.08300 -17.54178 -17.26633 -17.03532 -16.78324 -16.59734 -16.06184 -15.82405 -15.72277 -15.40834 -15.00138 -14.81442 -14.72501 -14.19571 -14.02768 -13.96934 -13.57205 -13.29372 -13.08489 -12.86634 -12.77516 -12.69354 -12.57987 -12.50242 -12.29300 -12.11724 -11.81904 -11.66182 -11.46974 -11.20697 -10.86184 -10.70642 -10.64581 -10.46440 -10.43178 -9.69728 -9.20480 -8.25828 -6.31817 -0.44966 0.32378 0.61566 0.65088 1.29497 1.32478 1.35517 1.42661 1.52580 2.20495 2.32476 2.69716 2.88407 2.99175 3.08434 3.70862 3.79064 3.97519 4.07445 4.12478 4.13866 4.31659 4.35497 4.40742 4.45646 4.48483 4.55237 4.60059 4.61118 4.68211 4.75125 4.87326 4.91121 4.92895 5.00567 5.16585 5.18559 5.27247 5.55943 5.65850 5.90192 6.21801 6.34337 6.43469 6.57721 6.77151 7.34041 7.67987 8.85550 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004288 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.586369 B = 6528.695857 C = 7922.074715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.119 3.881 3 N -0.453 5.453 4 C 0.230 3.770 5 C 0.113 3.887 6 C -0.224 4.224 7 S 0.229 5.771 8 C 0.029 3.971 9 N -0.489 5.489 10 N -0.303 5.303 11 N -0.350 5.350 12 C 0.389 3.611 13 N -0.455 5.455 14 C 0.219 3.781 15 C -0.516 4.516 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.955 3.045 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.065 3.935 24 C 0.075 3.925 25 O -0.399 6.399 26 C 0.028 3.972 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.246 0.754 34 H 0.036 0.964 35 H -0.015 1.015 36 H 0.265 0.735 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -14.599 -15.836 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.002 4.002 3 N -0.146 5.146 4 C -0.038 4.038 5 C -0.019 4.019 6 C -0.368 4.368 7 S 0.482 5.518 8 C -0.270 4.270 9 N -0.203 5.203 10 N -0.146 5.146 11 N -0.195 5.195 12 C 0.032 3.968 13 N -0.182 5.182 14 C 0.095 3.905 15 C -0.554 4.554 16 H 0.065 0.935 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.780 3.220 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.062 4.062 24 C -0.002 4.002 25 O -0.318 6.318 26 C -0.068 4.068 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.203 0.797 33 H 0.262 0.738 34 H 0.054 0.946 35 H 0.003 0.997 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.800 -13.773 -16.493 22.017 hybrid contribution -0.749 0.445 1.617 1.837 sum 4.051 -13.328 -14.876 20.380 Atomic orbital electron populations 1.21927 0.93828 1.03800 1.00984 1.22012 0.96092 0.76856 1.05221 1.46613 1.48029 1.14943 1.04975 1.22005 1.05153 0.88578 0.88090 1.16992 1.05711 0.91038 0.88165 1.27335 1.07800 1.05974 0.95648 1.83731 1.56766 1.04780 1.06505 1.28999 1.02117 1.05417 0.90455 1.66082 1.16337 1.19853 1.18062 1.74118 1.18874 1.18204 1.03362 1.74491 1.23375 1.18373 1.03256 1.22452 0.98142 0.87156 0.89085 1.58968 1.22368 1.41543 0.95295 1.19526 0.93994 0.86020 0.91000 1.21189 0.93354 1.13009 1.27877 0.93501 1.25659 1.02749 0.95366 0.94790 1.70040 1.38214 1.20262 1.27801 0.85599 0.80384 0.77615 0.78422 1.18823 1.20479 1.20531 1.22232 0.87570 0.98890 0.97515 1.22543 0.96413 0.86005 0.95272 1.87899 1.76531 1.35031 1.32315 1.22864 1.01236 0.96585 0.86096 0.95153 0.92767 0.87778 0.86293 0.88595 0.79680 0.73780 0.94638 0.99699 0.92575 0.92795 0.89776 0.89558 0.93961 0.88520 0.92366 0.94927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 10.24 71.98 0.74 -3.96 16 2 C 0.12 3.84 6.33 86.38 0.55 4.39 16 3 N -0.45 -18.42 2.84 -516.59 -1.46 -19.88 16 4 C 0.23 9.23 7.87 136.21 1.07 10.31 16 5 C 0.11 3.44 6.69 40.83 0.27 3.71 16 6 C -0.22 -5.39 11.12 67.09 0.75 -4.64 16 7 S 0.23 3.02 23.21 -56.49 -1.31 1.71 16 8 C 0.03 0.41 12.19 130.69 1.59 2.01 16 9 N -0.49 -11.86 8.40 -193.02 -1.62 -13.48 16 10 N -0.30 -14.14 12.11 -50.83 -0.62 -14.76 16 11 N -0.35 -18.10 11.48 -57.89 -0.66 -18.76 16 12 C 0.39 18.36 6.10 260.02 1.59 19.95 16 13 N -0.46 -21.08 4.42 -710.18 -3.14 -24.21 16 14 C 0.22 12.10 4.55 85.56 0.39 12.49 16 15 C -0.52 -30.79 8.83 25.60 0.23 -30.56 16 16 H 0.05 2.85 7.08 -2.91 -0.02 2.83 16 17 C 0.01 0.80 5.45 84.65 0.46 1.26 16 18 N -0.92 -56.89 13.30 21.45 0.29 -56.61 16 19 Si 0.95 47.10 29.54 68.60 2.03 49.13 16 20 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 23 C 0.07 2.44 5.28 86.30 0.46 2.89 16 24 C 0.07 2.44 6.02 71.98 0.43 2.88 16 25 O -0.40 -13.27 10.65 -148.98 -1.59 -14.85 16 26 C 0.03 0.70 11.01 113.37 1.25 1.95 16 27 H 0.03 1.21 7.40 -2.39 -0.02 1.19 16 28 H 0.05 1.73 8.02 -2.39 -0.02 1.71 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.12 3.25 6.74 -2.39 -0.02 3.24 16 31 H 0.10 3.10 8.12 -2.39 -0.02 3.09 16 32 H 0.19 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.25 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.04 1.99 5.87 -2.39 -0.01 1.98 16 35 H -0.01 -0.93 7.51 -2.39 -0.02 -0.95 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 38 H 0.08 2.87 8.05 -2.39 -0.02 2.85 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.04 1.58 6.10 -2.39 -0.01 1.57 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -80.82 377.09 2.71 -78.11 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.03 Total: 10.94 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 9.77 Total: 22.67 kcal Atomic # 7 Polarization: -140.48 SS G_CDS: -7.22 Total: -147.70 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.59 Total: -14.85 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.31 Total: 1.71 kcal Total: -80.82 2.71 -78.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650299486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.923 kcal (2) G-P(sol) polarization free energy of solvation -80.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds