Wall clock time and date at job start Tue Mar 31 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47372 * 2 1 4 4 C 1.36741 * 127.13413 * 95.06480 * 3 2 1 5 5 C 1.50701 * 126.34568 * 359.77458 * 4 3 2 6 6 C 1.52996 * 109.46914 * 89.99997 * 5 4 3 7 7 H 1.09000 * 109.47772 * 55.00074 * 6 5 4 8 8 O 1.42897 * 109.47278 * 294.99553 * 6 5 4 9 9 C 1.50709 * 109.47163 * 174.99759 * 6 5 4 10 10 H 1.08005 * 119.99581 * 359.97438 * 9 6 5 11 11 C 1.37872 * 120.00110 * 179.97438 * 9 6 5 12 12 N 1.31508 * 120.00307 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99906 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47275 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47187 * 120.00411 * 13 11 9 16 16 H 1.48504 * 109.47227 * 240.00536 * 13 11 9 17 17 N 1.30293 * 107.30518 * 179.73879 * 4 3 2 18 18 N 1.28533 * 110.05427 * 359.97438 * 17 4 3 19 19 C 1.31222 * 109.85777 * 0.02562 * 18 17 4 20 20 N 1.38575 * 126.47220 * 179.97438 * 19 18 17 21 21 C 1.46909 * 110.99739 * 299.92389 * 20 19 18 22 22 C 1.46899 * 111.00254 * 63.87418 * 20 19 18 23 23 C 1.50703 * 109.47103 * 170.00111 * 22 20 19 24 24 N 1.29025 * 124.91395 * 89.69998 * 23 22 20 25 25 C 1.31780 * 117.12138 * 179.80815 * 24 23 22 26 26 C 1.33642 * 114.50278 * 0.47917 * 25 24 23 27 27 S 1.70978 * 124.91637 * 270.00332 * 23 22 20 28 28 H 1.08998 * 109.47758 * 175.95498 * 1 2 3 29 29 H 1.08996 * 109.47087 * 295.95590 * 1 2 3 30 30 H 1.09007 * 109.47107 * 55.94811 * 1 2 3 31 31 H 1.09001 * 109.46732 * 239.99687 * 2 1 3 32 32 H 1.09003 * 109.46633 * 120.00497 * 2 1 3 33 33 H 1.08999 * 109.46812 * 209.99458 * 5 4 3 34 34 H 1.09001 * 109.47422 * 329.99598 * 5 4 3 35 35 H 0.96706 * 114.00274 * 300.00188 * 8 6 5 36 36 H 0.96997 * 120.00500 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.46840 * 65.80125 * 21 20 19 38 38 H 1.09002 * 109.46962 * 185.79870 * 21 20 19 39 39 H 1.08994 * 109.46854 * 305.79757 * 21 20 19 40 40 H 1.08998 * 109.47385 * 290.00881 * 22 20 19 41 41 H 1.08998 * 109.46907 * 50.00552 * 22 20 19 42 42 H 1.08007 * 122.75043 * 180.22330 * 25 24 23 43 43 H 1.08001 * 126.04085 * 179.71765 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3843 2.1273 1.0859 5 6 2.3573 1.6824 2.5255 6 6 3.7015 1.0485 2.8886 7 1 4.5060 1.7493 2.6655 8 8 3.8859 -0.1465 2.1271 9 6 3.7191 0.7152 4.3583 10 1 2.8577 0.9342 4.9720 11 6 4.8347 0.1309 4.9194 12 7 5.8837 -0.1352 4.1724 13 14 4.8567 -0.2814 6.7412 14 1 3.5636 0.1154 7.3542 15 1 5.0590 -1.7422 6.9157 16 1 5.9646 0.4542 7.4020 17 7 2.7615 3.2940 0.6451 18 7 2.6600 3.3352 -0.6355 19 6 2.2085 2.1877 -1.0841 20 7 1.9695 1.8575 -2.4085 21 6 0.9692 2.7546 -3.0025 22 6 3.2152 1.8690 -3.1870 23 6 2.9625 1.2732 -4.5480 24 7 2.5904 1.9395 -5.5883 25 6 2.4172 1.2621 -6.7053 26 6 2.6468 -0.0501 -6.5990 27 16 3.1205 -0.3847 -4.9352 28 1 -0.3634 -1.0250 -0.0725 29 1 -0.3633 0.4498 0.9240 30 1 -0.3634 0.5755 -0.8515 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1762 2.5436 3.1685 34 1 1.5611 0.9510 2.6648 35 1 3.2048 -0.8168 2.2759 36 1 6.6688 -0.5459 4.5672 37 1 1.3724 3.7661 -3.0521 38 1 0.7246 2.4112 -4.0077 39 1 0.0687 2.7520 -2.3884 40 1 3.5644 2.8954 -3.2987 41 1 3.9731 1.2818 -2.6684 42 1 2.1105 1.7286 -7.6300 43 1 2.5574 -0.7772 -7.3926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650307312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:14 Heat of formation + Delta-G solvation = 87.666686 kcal Electronic energy + Delta-G solvation = -27148.859375 eV Core-core repulsion = 23358.108203 eV Total energy + Delta-G solvation = -3790.751172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.61337 -39.98803 -37.51231 -36.27689 -35.20110 -32.22529 -31.81319 -31.04575 -30.23917 -28.26011 -28.14596 -25.88109 -25.18417 -24.00954 -23.46869 -21.80236 -20.57465 -20.09721 -19.83584 -18.23147 -17.42849 -16.99093 -16.21664 -16.05591 -15.69233 -15.05236 -14.75625 -14.66790 -14.52904 -14.14343 -14.02682 -13.75904 -13.59353 -13.23182 -13.06774 -12.90323 -12.68370 -12.29177 -12.15878 -11.94817 -11.70137 -11.46558 -11.28389 -11.12868 -11.06571 -10.91004 -10.76553 -10.28772 -10.15034 -9.90278 -9.81027 -9.68286 -9.36161 -9.21568 -8.85916 -8.71897 -8.63804 -8.13208 -6.08482 -4.28097 0.39891 1.11492 1.53386 2.06668 2.40120 2.69739 3.23113 3.24826 3.32184 3.34958 3.66577 3.99961 4.32561 4.63104 4.77769 4.89913 4.93042 5.01335 5.04834 5.11722 5.18349 5.23356 5.31703 5.37437 5.42752 5.45993 5.63562 5.64245 5.76385 5.82310 5.88182 6.00177 6.14301 6.19298 6.32718 6.38685 6.43202 6.66658 6.88436 7.43776 7.47879 7.61567 7.75111 8.03915 8.73614 9.14654 9.19763 9.48067 10.95630 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002786 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.157549 B =10049.300968 C =10532.412063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.452 5.452 4 C 0.227 3.773 5 C -0.065 4.065 6 C 0.237 3.763 7 H 0.065 0.935 8 O -0.562 6.562 9 C -0.573 4.573 10 H 0.060 0.940 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.300 5.300 18 N -0.308 5.308 19 C 0.316 3.684 20 N -0.456 5.456 21 C 0.040 3.960 22 C 0.140 3.860 23 C 0.056 3.944 24 N -0.469 5.469 25 C 0.038 3.962 26 C -0.266 4.266 27 S 0.154 5.846 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.339 0.661 36 H 0.261 0.739 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.175 0.825 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -3.380 -19.087 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.144 5.144 4 C -0.040 4.040 5 C -0.105 4.105 6 C 0.178 3.822 7 H 0.082 0.918 8 O -0.364 6.364 9 C -0.611 4.611 10 H 0.078 0.922 11 C -0.126 4.126 12 N -0.491 5.491 13 Si 0.718 3.282 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.140 5.140 18 N -0.153 5.153 19 C -0.041 4.041 20 N -0.182 5.182 21 C -0.107 4.107 22 C 0.009 3.991 23 C -0.222 4.222 24 N -0.184 5.184 25 C -0.114 4.114 26 C -0.406 4.406 27 S 0.408 5.592 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.183 0.817 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.192 0.808 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.408 -2.504 -18.718 21.098 hybrid contribution -0.867 -0.794 0.207 1.193 sum -10.274 -3.298 -18.511 21.427 Atomic orbital electron populations 1.22122 0.94427 1.02997 1.02750 1.21845 0.94940 0.79161 1.05416 1.46266 1.48651 1.13507 1.06012 1.25346 0.98057 0.88248 0.92396 1.21243 1.03393 1.02092 0.83796 1.19428 0.88888 0.83589 0.90252 0.91755 1.86667 1.53308 1.28014 1.68456 1.21594 1.01614 1.43902 0.94006 0.92174 1.25034 0.95213 0.94611 0.97762 1.70083 1.04121 1.39750 1.35164 0.86582 0.78256 0.78060 0.85277 1.19607 1.20917 1.20809 1.74052 1.20172 1.17592 1.02209 1.74488 1.17932 1.18245 1.04598 1.21906 1.05940 0.88698 0.87539 1.58484 1.10431 1.53006 0.96241 1.22403 0.93787 0.94819 0.99729 1.20631 0.90797 1.01959 0.85683 1.26750 1.02738 0.94125 0.98610 1.66313 1.14818 1.38662 0.98647 1.21794 1.02152 0.90278 0.97180 1.27185 1.11648 1.00986 1.00795 1.84195 1.61371 1.10155 1.03493 0.90516 0.92062 0.92074 0.88878 0.87764 0.88418 0.90937 0.81681 0.92916 0.93156 0.90198 0.91393 0.89622 0.88183 0.80796 0.80613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.11 1.39 6.67 -4.04 -0.03 1.36 16 3 N -0.45 -7.41 2.81 -114.09 -0.32 -7.73 16 4 C 0.23 4.38 7.09 -154.01 -1.09 3.29 16 5 C -0.06 -1.25 5.00 -27.88 -0.14 -1.39 16 6 C 0.24 5.65 2.81 -27.88 -0.08 5.57 16 7 H 0.06 1.80 8.14 -51.93 -0.42 1.38 16 8 O -0.56 -13.06 11.72 -35.23 -0.41 -13.47 16 9 C -0.57 -14.77 8.76 -34.44 -0.30 -15.07 16 10 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 11 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 12 N -0.86 -24.49 12.84 55.43 0.71 -23.78 16 13 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 N -0.30 -6.42 12.18 32.99 0.40 -6.02 16 18 N -0.31 -6.08 12.18 30.31 0.37 -5.71 16 19 C 0.32 5.25 6.39 -318.88 -2.04 3.21 16 20 N -0.46 -6.09 4.77 -183.76 -0.88 -6.97 16 21 C 0.04 0.49 9.23 60.07 0.55 1.04 16 22 C 0.14 1.78 5.48 -4.97 -0.03 1.75 16 23 C 0.06 0.62 6.05 -13.46 -0.08 0.54 16 24 N -0.47 -5.33 9.79 -11.86 -0.12 -5.45 16 25 C 0.04 0.33 11.35 -19.18 -0.22 0.11 16 26 C -0.27 -2.05 11.37 29.12 0.33 -1.71 16 27 S 0.15 1.42 23.18 -107.50 -2.49 -1.07 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.35 5.35 -51.93 -0.28 1.07 16 33 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 34 H 0.07 1.22 7.79 -51.93 -0.40 0.81 16 35 H 0.34 6.70 7.67 45.56 0.35 7.05 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.08 0.90 6.79 -51.93 -0.35 0.55 16 39 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 41 H 0.10 1.30 8.05 -51.93 -0.42 0.88 16 42 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -32.49 377.18 -10.20 -42.69 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.29 Total: 7.03 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.83 Total: -0.55 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.17 Total: -55.66 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.41 Total: -13.47 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.49 Total: -1.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.49 -10.20 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650307312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.353 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds