Wall clock time and date at job start Tue Mar 31 2020 21:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47372 * 2 1 4 4 C 1.36741 * 127.13413 * 95.06480 * 3 2 1 5 5 C 1.50701 * 126.34568 * 359.77458 * 4 3 2 6 6 C 1.52996 * 109.46914 * 89.99997 * 5 4 3 7 7 H 1.09000 * 109.47772 * 55.00074 * 6 5 4 8 8 O 1.42897 * 109.47278 * 294.99553 * 6 5 4 9 9 C 1.50709 * 109.47163 * 174.99759 * 6 5 4 10 10 H 1.08005 * 119.99581 * 359.97438 * 9 6 5 11 11 C 1.37872 * 120.00110 * 179.97438 * 9 6 5 12 12 N 1.31508 * 120.00307 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99906 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47275 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47187 * 120.00411 * 13 11 9 16 16 H 1.48504 * 109.47227 * 240.00536 * 13 11 9 17 17 N 1.30293 * 107.30518 * 179.73879 * 4 3 2 18 18 N 1.28533 * 110.05427 * 359.97438 * 17 4 3 19 19 C 1.31222 * 109.85777 * 0.02562 * 18 17 4 20 20 N 1.38575 * 126.47220 * 179.97438 * 19 18 17 21 21 C 1.46909 * 110.99739 * 299.92389 * 20 19 18 22 22 C 1.46899 * 111.00254 * 63.87418 * 20 19 18 23 23 C 1.50703 * 109.47103 * 170.00111 * 22 20 19 24 24 N 1.29025 * 124.91395 * 89.69998 * 23 22 20 25 25 C 1.31780 * 117.12138 * 179.80815 * 24 23 22 26 26 C 1.33642 * 114.50278 * 0.47917 * 25 24 23 27 27 S 1.70978 * 124.91637 * 270.00332 * 23 22 20 28 28 H 1.08998 * 109.47758 * 175.95498 * 1 2 3 29 29 H 1.08996 * 109.47087 * 295.95590 * 1 2 3 30 30 H 1.09007 * 109.47107 * 55.94811 * 1 2 3 31 31 H 1.09001 * 109.46732 * 239.99687 * 2 1 3 32 32 H 1.09003 * 109.46633 * 120.00497 * 2 1 3 33 33 H 1.08999 * 109.46812 * 209.99458 * 5 4 3 34 34 H 1.09001 * 109.47422 * 329.99598 * 5 4 3 35 35 H 0.96706 * 114.00274 * 300.00188 * 8 6 5 36 36 H 0.96997 * 120.00500 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.46840 * 65.80125 * 21 20 19 38 38 H 1.09002 * 109.46962 * 185.79870 * 21 20 19 39 39 H 1.08994 * 109.46854 * 305.79757 * 21 20 19 40 40 H 1.08998 * 109.47385 * 290.00881 * 22 20 19 41 41 H 1.08998 * 109.46907 * 50.00552 * 22 20 19 42 42 H 1.08007 * 122.75043 * 180.22330 * 25 24 23 43 43 H 1.08001 * 126.04085 * 179.71765 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3843 2.1273 1.0859 5 6 2.3573 1.6824 2.5255 6 6 3.7015 1.0485 2.8886 7 1 4.5060 1.7493 2.6655 8 8 3.8859 -0.1465 2.1271 9 6 3.7191 0.7152 4.3583 10 1 2.8577 0.9342 4.9720 11 6 4.8347 0.1309 4.9194 12 7 5.8837 -0.1352 4.1724 13 14 4.8567 -0.2814 6.7412 14 1 3.5636 0.1154 7.3542 15 1 5.0590 -1.7422 6.9157 16 1 5.9646 0.4542 7.4020 17 7 2.7615 3.2940 0.6451 18 7 2.6600 3.3352 -0.6355 19 6 2.2085 2.1877 -1.0841 20 7 1.9695 1.8575 -2.4085 21 6 0.9692 2.7546 -3.0025 22 6 3.2152 1.8690 -3.1870 23 6 2.9625 1.2732 -4.5480 24 7 2.5904 1.9395 -5.5883 25 6 2.4172 1.2621 -6.7053 26 6 2.6468 -0.0501 -6.5990 27 16 3.1205 -0.3847 -4.9352 28 1 -0.3634 -1.0250 -0.0725 29 1 -0.3633 0.4498 0.9240 30 1 -0.3634 0.5755 -0.8515 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1762 2.5436 3.1685 34 1 1.5611 0.9510 2.6648 35 1 3.2048 -0.8168 2.2759 36 1 6.6688 -0.5459 4.5672 37 1 1.3724 3.7661 -3.0521 38 1 0.7246 2.4112 -4.0077 39 1 0.0687 2.7520 -2.3884 40 1 3.5644 2.8954 -3.2987 41 1 3.9731 1.2818 -2.6684 42 1 2.1105 1.7286 -7.6300 43 1 2.5574 -0.7772 -7.3926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650307312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:12 Heat of formation + Delta-G solvation = 66.228625 kcal Electronic energy + Delta-G solvation = -27149.788999 eV Core-core repulsion = 23358.108203 eV Total energy + Delta-G solvation = -3791.680796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.02210 -40.76688 -38.65873 -38.00536 -36.49206 -34.24733 -33.19809 -32.09350 -31.35148 -29.79600 -29.08475 -27.42068 -26.52681 -25.03565 -24.44521 -23.55340 -21.79431 -21.38046 -20.83577 -19.17559 -19.01236 -18.36376 -17.44992 -17.24482 -16.66180 -16.53104 -16.46905 -15.95103 -15.78002 -15.42290 -15.10637 -15.02624 -14.69883 -14.51991 -14.36285 -13.98010 -13.89997 -13.34536 -13.24564 -13.18225 -12.94384 -12.90987 -12.77193 -12.59304 -12.40954 -12.36446 -12.22541 -11.98193 -11.62529 -11.27396 -11.01592 -10.70333 -10.69177 -10.50265 -10.40072 -10.08216 -9.92065 -9.75238 -8.11779 -6.37620 -0.34322 0.39131 0.71727 0.83383 1.24980 1.43507 1.46398 1.57361 1.74128 1.87716 2.41966 2.61389 3.12502 3.15135 3.43250 3.67450 3.72301 3.99935 4.04200 4.10602 4.17074 4.24119 4.33206 4.41160 4.43355 4.46773 4.54130 4.56577 4.57982 4.66321 4.76424 4.79823 4.89043 4.98904 5.19541 5.21073 5.23397 5.35955 5.52049 5.64628 5.72606 6.04034 6.18559 6.74286 6.74519 7.35003 7.53256 7.69336 8.92952 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002786 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.157549 B =10049.300968 C =10532.412063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.447 5.447 4 C 0.215 3.785 5 C -0.048 4.048 6 C 0.244 3.756 7 H 0.011 0.989 8 O -0.573 6.573 9 C -0.579 4.579 10 H 0.071 0.929 11 C 0.026 3.974 12 N -0.900 5.900 13 Si 0.960 3.040 14 H -0.258 1.258 15 H -0.279 1.279 16 H -0.287 1.287 17 N -0.338 5.338 18 N -0.343 5.343 19 C 0.332 3.668 20 N -0.445 5.445 21 C 0.047 3.953 22 C 0.145 3.855 23 C 0.030 3.970 24 N -0.487 5.487 25 C 0.020 3.980 26 C -0.245 4.245 27 S 0.168 5.832 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.357 0.643 36 H 0.260 0.740 37 H 0.036 0.964 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.199 0.801 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.675 -5.421 -20.128 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.138 5.138 4 C -0.054 4.054 5 C -0.088 4.088 6 C 0.186 3.814 7 H 0.029 0.971 8 O -0.378 6.378 9 C -0.617 4.617 10 H 0.089 0.911 11 C -0.176 4.176 12 N -0.537 5.537 13 Si 0.785 3.215 14 H -0.182 1.182 15 H -0.205 1.205 16 H -0.213 1.213 17 N -0.178 5.178 18 N -0.187 5.187 19 C -0.025 4.025 20 N -0.171 5.171 21 C -0.100 4.100 22 C 0.015 3.985 23 C -0.247 4.247 24 N -0.204 5.204 25 C -0.131 4.131 26 C -0.384 4.384 27 S 0.420 5.580 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.203 0.797 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.216 0.784 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.484 -4.555 -19.758 23.303 hybrid contribution -0.236 -0.219 0.341 0.469 sum -11.720 -4.774 -19.417 23.177 Atomic orbital electron populations 1.22078 0.92083 1.04785 1.02347 1.22195 0.96812 0.77098 1.05948 1.46459 1.47827 1.14498 1.05008 1.25201 0.98798 0.88430 0.92956 1.20935 1.01529 1.02353 0.83944 1.19056 0.89530 0.83155 0.89694 0.97139 1.86593 1.54542 1.28445 1.68180 1.22000 1.01758 1.42839 0.95096 0.91082 1.25890 0.94881 0.94671 1.02172 1.70230 1.04907 1.41317 1.37245 0.85498 0.78435 0.77721 0.79825 1.18214 1.20466 1.21288 1.73943 1.21337 1.19294 1.03266 1.74406 1.19884 1.20262 1.04147 1.22236 1.03602 0.87886 0.88796 1.58738 1.10952 1.52657 0.94735 1.22376 0.93358 0.93903 1.00360 1.20463 0.90179 1.01112 0.86794 1.26340 1.05070 0.95424 0.97854 1.66284 1.14834 1.39851 0.99386 1.22202 1.02728 0.90881 0.97265 1.27605 1.09125 1.01192 1.00484 1.84133 1.60862 1.08234 1.04727 0.87563 0.92499 0.92410 0.87681 0.87859 0.88646 0.87858 0.79743 0.93099 0.94487 0.88859 0.90875 0.91326 0.89054 0.78393 0.77325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.24 71.98 0.74 -2.04 16 2 C 0.10 2.38 6.67 86.38 0.58 2.96 16 3 N -0.45 -14.52 2.81 -514.86 -1.45 -15.96 16 4 C 0.21 8.43 7.09 137.64 0.98 9.41 16 5 C -0.05 -1.83 5.00 29.85 0.15 -1.68 16 6 C 0.24 11.89 2.81 29.85 0.08 11.97 16 7 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 8 O -0.57 -26.84 11.72 -148.98 -1.75 -28.58 16 9 C -0.58 -29.77 8.76 25.60 0.22 -29.55 16 10 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 11 C 0.03 1.42 5.40 84.65 0.46 1.88 16 12 N -0.90 -52.52 12.84 21.44 0.28 -52.24 16 13 Si 0.96 41.69 29.54 68.60 2.03 43.72 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 17 N -0.34 -15.03 12.18 -49.54 -0.60 -15.64 16 18 N -0.34 -14.04 12.18 -58.01 -0.71 -14.74 16 19 C 0.33 11.17 6.39 260.11 1.66 12.83 16 20 N -0.44 -11.79 4.77 -735.28 -3.51 -15.30 16 21 C 0.05 1.12 9.23 127.69 1.18 2.30 16 22 C 0.14 3.76 5.48 85.56 0.47 4.23 16 23 C 0.03 0.65 6.05 88.52 0.54 1.18 16 24 N -0.49 -10.52 9.79 -191.44 -1.87 -12.39 16 25 C 0.02 0.30 11.35 83.66 0.95 1.25 16 26 C -0.24 -2.97 11.37 66.78 0.76 -2.21 16 27 S 0.17 2.76 23.18 -56.49 -1.31 1.45 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 2.49 5.35 -2.39 -0.01 2.47 16 33 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 34 H 0.10 3.28 7.79 -2.39 -0.02 3.27 16 35 H 0.36 13.77 7.67 -74.05 -0.57 13.21 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.04 0.98 8.13 -2.39 -0.02 0.96 16 38 H 0.09 2.00 6.79 -2.39 -0.02 1.98 16 39 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 40 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 41 H 0.09 2.47 8.05 -2.39 -0.02 2.45 16 42 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -72.47 377.18 0.34 -72.14 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.47 Total: 25.01 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 8.76 Total: 12.53 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -7.86 Total: -126.27 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.75 Total: -28.58 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.31 Total: 1.45 kcal Total: -72.47 0.34 -72.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650307312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.365 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds