Wall clock time and date at job start Tue Mar 31 2020 20:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.44824 * 2 1 4 4 C 1.53030 * 109.46737 * 119.97334 * 2 1 3 5 5 H 1.09001 * 109.53376 * 299.15862 * 4 2 1 6 6 N 1.46501 * 109.50139 * 59.25717 * 4 2 1 7 7 C 1.34781 * 119.99983 * 204.80625 * 6 4 2 8 8 O 1.21276 * 119.99751 * 359.97438 * 7 6 4 9 9 C 1.50697 * 119.99770 * 179.97438 * 7 6 4 10 10 F 1.39906 * 109.46908 * 179.97438 * 9 7 6 11 11 F 1.39897 * 109.47069 * 299.99550 * 9 7 6 12 12 F 1.39902 * 109.47283 * 59.99833 * 9 7 6 13 13 C 1.53114 * 109.28255 * 179.19701 * 4 2 1 14 14 C 1.53125 * 109.16200 * 302.35059 * 13 4 2 15 15 C 1.53039 * 109.27936 * 57.64727 * 14 13 4 16 16 N 1.46845 * 109.46177 * 240.03368 * 2 1 3 17 17 C 1.46899 * 111.00387 * 54.13995 * 16 2 1 18 18 C 1.50703 * 109.46895 * 199.72132 * 17 16 2 19 19 O 1.21285 * 120.00535 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99668 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99803 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00371 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99865 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00091 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00031 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47217 * 90.00184 * 25 23 21 27 27 H 1.48504 * 109.47011 * 209.99882 * 25 23 21 28 28 H 1.48502 * 109.46944 * 329.99844 * 25 23 21 29 29 H 1.09002 * 109.46620 * 171.83712 * 1 2 3 30 30 H 1.08997 * 109.47045 * 291.82980 * 1 2 3 31 31 H 1.08995 * 109.47435 * 51.83797 * 1 2 3 32 32 H 0.97000 * 119.99883 * 24.80399 * 6 4 2 33 33 H 1.09000 * 109.52656 * 182.44037 * 13 4 2 34 34 H 1.09002 * 109.57514 * 62.28080 * 13 4 2 35 35 H 1.09003 * 109.49844 * 297.70978 * 14 13 4 36 36 H 1.08993 * 109.53615 * 177.61639 * 14 13 4 37 37 H 1.08996 * 109.46083 * 180.80481 * 15 14 13 38 38 H 1.09003 * 109.44833 * 60.83430 * 15 14 13 39 39 H 1.09002 * 109.47203 * 79.72203 * 17 16 2 40 40 H 1.08996 * 109.47084 * 319.72199 * 17 16 2 41 41 H 0.97003 * 119.99799 * 0.02562 * 20 18 17 42 42 H 0.96993 * 120.00329 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7208 1.2498 5 1 1.6896 -0.1987 2.1402 6 7 1.5374 -2.0969 1.2601 7 6 1.4127 -2.7601 2.4268 8 8 1.7170 -2.2179 3.4680 9 6 0.8952 -4.1754 2.4374 10 9 0.8562 -4.6478 3.7537 11 9 -0.3930 -4.2049 1.8925 12 9 1.7424 -4.9875 1.6758 13 6 3.5710 -0.7359 1.2355 14 6 4.0549 -1.4186 -0.0469 15 6 3.4865 -0.6775 -1.2592 16 7 2.0193 -0.6916 -1.1995 17 6 1.4372 -0.1104 -2.4166 18 6 1.5527 -1.0976 -3.5494 19 8 2.0685 -2.1790 -3.3613 20 7 1.0816 -0.7790 -4.7714 21 6 1.1862 -1.6772 -5.8018 22 1 1.6463 -2.6399 -5.6345 23 6 0.7011 -1.3486 -7.0618 24 7 0.8017 -2.2094 -8.0496 25 14 -0.0941 0.3166 -7.3514 26 1 0.9428 1.2945 -7.7686 27 1 -1.1194 0.1966 -8.4189 28 1 -0.7378 0.7826 -6.0969 29 1 -0.3633 -1.0173 -0.1459 30 1 -0.3633 0.3821 0.9539 31 1 -0.3634 0.6349 -0.8080 32 1 1.2944 -2.5307 0.4272 33 1 3.9381 -1.2862 2.1019 34 1 3.9466 0.2868 1.2676 35 1 3.7127 -2.4534 -0.0597 36 1 5.1440 -1.3950 -0.0837 37 1 3.8175 -1.1696 -2.1737 38 1 3.8403 0.3535 -1.2531 39 1 1.9726 0.8033 -2.6749 40 1 0.3866 0.1212 -2.2420 41 1 0.6687 0.0858 -4.9218 42 1 0.4634 -1.9799 -8.9292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654048514.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:15 Heat of formation + Delta-G solvation = -207.309570 kcal Electronic energy + Delta-G solvation = -30865.625734 eV Core-core repulsion = 26045.181070 eV Total energy + Delta-G solvation = -4820.444665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -50.48487 -48.00214 -47.98467 -40.76744 -39.21437 -37.92388 -34.98797 -33.92178 -33.37340 -31.72134 -31.61229 -28.38908 -27.59252 -26.69831 -24.59975 -23.11670 -22.01720 -21.50543 -19.65178 -19.53585 -19.29558 -18.92516 -18.65958 -18.29945 -16.66165 -16.20867 -15.79024 -15.55191 -15.39434 -15.01048 -14.91067 -14.75057 -14.71830 -14.37410 -14.21266 -14.12526 -14.09200 -14.08624 -13.76795 -13.50502 -13.27670 -13.10954 -12.95954 -12.51416 -12.17525 -12.16875 -11.99537 -11.86505 -11.51293 -11.20649 -10.96245 -10.73083 -10.63289 -10.59022 -10.37802 -10.00634 -9.58178 -9.52605 -8.69658 -8.21337 -8.10562 -6.33828 -3.85349 1.56245 1.70387 2.90648 2.98786 3.03149 3.12219 3.46974 3.65906 3.71097 3.93237 3.93509 4.07110 4.34333 4.49679 4.73126 4.79909 4.96840 5.07612 5.12368 5.16857 5.27614 5.39520 5.47037 5.52798 5.54411 5.68869 5.72270 5.82904 5.85811 5.87422 5.94789 6.03999 6.22008 6.29848 6.81116 7.00614 7.13344 7.39245 7.55192 8.11507 8.57248 8.92721 9.39669 9.80519 10.79334 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.003121 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.786435 B = 8968.155161 C = 9584.746499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 H 0.060 0.940 4 C 0.157 3.843 5 H 0.098 0.902 6 N -0.676 5.676 7 C 0.483 3.517 8 O -0.491 6.491 9 C 0.449 3.551 10 F -0.157 7.157 11 F -0.167 7.167 12 F -0.164 7.164 13 C -0.135 4.135 14 C -0.115 4.115 15 C 0.057 3.943 16 N -0.513 5.513 17 C 0.037 3.963 18 C 0.453 3.547 19 O -0.557 6.557 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.424 0.576 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.028 0.972 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.369 0.631 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 5.986 19.642 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.038 4.038 3 H 0.078 0.922 4 C 0.053 3.947 5 H 0.116 0.884 6 N -0.329 5.329 7 C 0.260 3.740 8 O -0.364 6.364 9 C 0.391 3.609 10 F -0.139 7.139 11 F -0.148 7.148 12 F -0.146 7.146 13 C -0.173 4.173 14 C -0.153 4.153 15 C -0.070 4.070 16 N -0.238 5.238 17 C -0.095 4.095 18 C 0.238 3.762 19 O -0.439 6.439 20 N -0.232 5.232 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.263 0.737 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.202 0.798 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.946 5.081 20.295 20.943 hybrid contribution -0.668 1.619 -0.977 2.005 sum 0.279 6.700 19.318 20.449 Atomic orbital electron populations 1.21987 0.93621 1.03437 1.02059 1.21924 0.96157 0.95852 0.89907 0.92209 1.21241 0.94311 0.80637 0.98529 0.88391 1.45951 1.62801 1.15455 1.08652 1.20235 0.81278 0.86363 0.86100 1.90843 1.48177 1.66062 1.31356 1.20310 0.76739 0.88988 0.74877 1.93253 1.96101 1.89326 1.35178 1.93277 1.39052 1.96863 1.85620 1.93296 1.70444 1.75233 1.75608 1.22032 0.94224 1.01884 0.99178 1.21562 1.00020 1.00693 0.93045 1.22184 0.86222 0.98352 1.00263 1.61457 1.07879 1.54216 1.00278 1.22020 1.01108 0.95951 0.90375 1.19635 0.84489 0.88990 0.83086 1.90555 1.46811 1.23946 1.82541 1.42217 1.54813 1.16776 1.09408 1.19411 1.37557 0.99460 0.86841 0.86280 1.25034 0.97810 0.97878 0.95424 1.69617 1.45918 1.34841 1.01774 0.86686 0.79972 0.84105 0.78671 1.19719 1.20205 1.19533 0.91176 0.91874 0.91679 0.73726 0.91076 0.90685 0.90773 0.91264 0.88693 0.95342 0.92999 0.88622 0.79831 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.29 37.16 0.31 -1.09 16 2 C 0.07 0.69 2.15 -67.73 -0.15 0.54 16 3 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.16 1.51 2.25 -67.86 -0.15 1.36 16 5 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 6 N -0.68 -7.16 3.83 -53.73 -0.21 -7.37 16 7 C 0.48 5.59 7.32 -10.98 -0.08 5.51 16 8 O -0.49 -6.70 16.28 5.56 0.09 -6.61 16 9 C 0.45 5.08 3.43 36.00 0.12 5.21 16 10 F -0.16 -1.88 16.92 2.25 0.04 -1.84 16 11 F -0.17 -1.87 17.30 2.25 0.04 -1.83 16 12 F -0.16 -1.93 17.30 2.25 0.04 -1.89 16 13 C -0.13 -1.27 5.67 -26.61 -0.15 -1.42 16 14 C -0.12 -1.27 5.93 -26.65 -0.16 -1.43 16 15 C 0.06 0.74 5.11 -3.83 -0.02 0.72 16 16 N -0.51 -6.63 3.53 -228.13 -0.81 -7.44 16 17 C 0.04 0.53 5.31 -4.98 -0.03 0.50 16 18 C 0.45 9.41 7.49 -10.98 -0.08 9.32 16 19 O -0.56 -13.72 14.73 5.55 0.08 -13.64 16 20 N -0.59 -13.30 5.09 -10.96 -0.06 -13.35 16 21 C -0.30 -8.28 10.16 -14.94 -0.15 -8.43 16 22 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.24 13.96 55.50 0.77 -24.47 16 25 Si 0.88 18.77 27.74 -169.99 -4.71 14.06 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 29 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.57 6.41 -51.93 -0.33 0.24 16 32 H 0.42 4.81 7.95 -40.82 -0.32 4.49 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.94 7.73 -51.93 -0.40 0.53 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.55 6.69 -51.93 -0.35 1.20 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16 40 H 0.10 1.21 5.43 -51.93 -0.28 0.92 16 41 H 0.37 7.27 5.76 -40.82 -0.24 7.04 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -31.16 353.77 -5.24 -36.40 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.22 Total: 10.86 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -0.63 Total: 11.79 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.29 Total: -52.63 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.17 Total: -20.25 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.12 Total: -5.56 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.16 -5.24 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654048514.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.910 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds