Wall clock time and date at job start Tue Mar 31 2020 20:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.44824 * 2 1 4 4 C 1.53030 * 109.46737 * 119.97334 * 2 1 3 5 5 H 1.09001 * 109.53376 * 299.15862 * 4 2 1 6 6 N 1.46501 * 109.50139 * 59.25717 * 4 2 1 7 7 C 1.34781 * 119.99983 * 204.80625 * 6 4 2 8 8 O 1.21276 * 119.99751 * 359.97438 * 7 6 4 9 9 C 1.50697 * 119.99770 * 179.97438 * 7 6 4 10 10 F 1.39906 * 109.46908 * 179.97438 * 9 7 6 11 11 F 1.39897 * 109.47069 * 299.99550 * 9 7 6 12 12 F 1.39902 * 109.47283 * 59.99833 * 9 7 6 13 13 C 1.53114 * 109.28255 * 179.19701 * 4 2 1 14 14 C 1.53125 * 109.16200 * 302.35059 * 13 4 2 15 15 C 1.53039 * 109.27936 * 57.64727 * 14 13 4 16 16 N 1.46845 * 109.46177 * 240.03368 * 2 1 3 17 17 C 1.46899 * 111.00387 * 54.13995 * 16 2 1 18 18 C 1.50703 * 109.46895 * 199.72132 * 17 16 2 19 19 O 1.21285 * 120.00535 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99668 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99803 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00371 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99865 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00091 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00031 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47217 * 90.00184 * 25 23 21 27 27 H 1.48504 * 109.47011 * 209.99882 * 25 23 21 28 28 H 1.48502 * 109.46944 * 329.99844 * 25 23 21 29 29 H 1.09002 * 109.46620 * 171.83712 * 1 2 3 30 30 H 1.08997 * 109.47045 * 291.82980 * 1 2 3 31 31 H 1.08995 * 109.47435 * 51.83797 * 1 2 3 32 32 H 0.97000 * 119.99883 * 24.80399 * 6 4 2 33 33 H 1.09000 * 109.52656 * 182.44037 * 13 4 2 34 34 H 1.09002 * 109.57514 * 62.28080 * 13 4 2 35 35 H 1.09003 * 109.49844 * 297.70978 * 14 13 4 36 36 H 1.08993 * 109.53615 * 177.61639 * 14 13 4 37 37 H 1.08996 * 109.46083 * 180.80481 * 15 14 13 38 38 H 1.09003 * 109.44833 * 60.83430 * 15 14 13 39 39 H 1.09002 * 109.47203 * 79.72203 * 17 16 2 40 40 H 1.08996 * 109.47084 * 319.72199 * 17 16 2 41 41 H 0.97003 * 119.99799 * 0.02562 * 20 18 17 42 42 H 0.96993 * 120.00329 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7208 1.2498 5 1 1.6896 -0.1987 2.1402 6 7 1.5374 -2.0969 1.2601 7 6 1.4127 -2.7601 2.4268 8 8 1.7170 -2.2179 3.4680 9 6 0.8952 -4.1754 2.4374 10 9 0.8562 -4.6478 3.7537 11 9 -0.3930 -4.2049 1.8925 12 9 1.7424 -4.9875 1.6758 13 6 3.5710 -0.7359 1.2355 14 6 4.0549 -1.4186 -0.0469 15 6 3.4865 -0.6775 -1.2592 16 7 2.0193 -0.6916 -1.1995 17 6 1.4372 -0.1104 -2.4166 18 6 1.5527 -1.0976 -3.5494 19 8 2.0685 -2.1790 -3.3613 20 7 1.0816 -0.7790 -4.7714 21 6 1.1862 -1.6772 -5.8018 22 1 1.6463 -2.6399 -5.6345 23 6 0.7011 -1.3486 -7.0618 24 7 0.8017 -2.2094 -8.0496 25 14 -0.0941 0.3166 -7.3514 26 1 0.9428 1.2945 -7.7686 27 1 -1.1194 0.1966 -8.4189 28 1 -0.7378 0.7826 -6.0969 29 1 -0.3633 -1.0173 -0.1459 30 1 -0.3633 0.3821 0.9539 31 1 -0.3634 0.6349 -0.8080 32 1 1.2944 -2.5307 0.4272 33 1 3.9381 -1.2862 2.1019 34 1 3.9466 0.2868 1.2676 35 1 3.7127 -2.4534 -0.0597 36 1 5.1440 -1.3950 -0.0837 37 1 3.8175 -1.1696 -2.1737 38 1 3.8403 0.3535 -1.2531 39 1 1.9726 0.8033 -2.6749 40 1 0.3866 0.1212 -2.2420 41 1 0.6687 0.0858 -4.9218 42 1 0.4634 -1.9799 -8.9292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654048514.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:14 Heat of formation + Delta-G solvation = -230.819531 kcal Electronic energy + Delta-G solvation = -30866.645203 eV Core-core repulsion = 26045.181070 eV Total energy + Delta-G solvation = -4821.464133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -51.42678 -48.94034 -48.93534 -41.68585 -40.45663 -39.33798 -36.16514 -35.64916 -34.26602 -33.65323 -32.56268 -29.43745 -28.73609 -27.59300 -26.23902 -24.19986 -22.92399 -22.42054 -21.17080 -20.52894 -20.41529 -20.03993 -19.86348 -19.58294 -17.86280 -17.35571 -16.91739 -16.64930 -16.53813 -16.39494 -16.05385 -15.70946 -15.67005 -15.38336 -15.31959 -15.25768 -15.03966 -15.03632 -15.01745 -14.77442 -14.46992 -14.34793 -14.18416 -13.84647 -13.63054 -13.13562 -12.91797 -12.87539 -12.73809 -12.38232 -12.32169 -11.96575 -11.83691 -11.69349 -11.55965 -11.40872 -11.25819 -10.39535 -10.31721 -10.17942 -9.18687 -8.36935 -5.96840 0.63201 0.79842 1.32025 1.37873 1.46518 1.99180 2.05393 2.26150 2.52393 2.61557 3.00164 3.00240 3.20075 3.28807 3.55707 3.75933 3.96179 4.05316 4.26569 4.30957 4.37215 4.42416 4.45942 4.51943 4.70237 4.72831 4.83749 4.92713 4.97707 5.03393 5.09183 5.27879 5.31714 5.42072 5.57762 5.88172 5.96417 6.07062 6.22227 6.47782 6.65584 6.95378 7.47584 8.06196 8.80960 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.003121 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.786435 B = 8968.155161 C = 9584.746499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 H 0.088 0.912 4 C 0.154 3.846 5 H 0.112 0.888 6 N -0.670 5.670 7 C 0.489 3.511 8 O -0.511 6.511 9 C 0.452 3.548 10 F -0.161 7.161 11 F -0.166 7.166 12 F -0.169 7.169 13 C -0.127 4.127 14 C -0.111 4.111 15 C 0.061 3.939 16 N -0.532 5.532 17 C 0.050 3.950 18 C 0.453 3.547 19 O -0.603 6.603 20 N -0.596 5.596 21 C -0.322 4.322 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.939 5.939 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.279 1.279 28 H -0.228 1.228 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.420 0.580 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.388 0.612 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 9.971 21.371 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.032 4.032 3 H 0.105 0.895 4 C 0.050 3.950 5 H 0.130 0.870 6 N -0.321 5.321 7 C 0.267 3.733 8 O -0.386 6.386 9 C 0.394 3.606 10 F -0.142 7.142 11 F -0.147 7.147 12 F -0.150 7.150 13 C -0.165 4.165 14 C -0.148 4.148 15 C -0.067 4.067 16 N -0.258 5.258 17 C -0.081 4.081 18 C 0.241 3.759 19 O -0.486 6.486 20 N -0.239 5.239 21 C -0.451 4.451 22 H 0.073 0.927 23 C -0.216 4.216 24 N -0.580 5.580 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.205 1.205 28 H -0.151 1.151 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.258 0.742 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.223 0.777 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.102 9.084 22.059 23.857 hybrid contribution -0.250 0.226 -1.456 1.495 sum -0.352 9.310 20.603 22.612 Atomic orbital electron populations 1.22010 0.92909 1.02735 1.03497 1.22006 0.96622 0.96670 0.87861 0.89470 1.21443 0.94432 0.79944 0.99159 0.87046 1.46023 1.62075 1.15955 1.08063 1.20142 0.81010 0.86165 0.86031 1.90833 1.49358 1.66470 1.31952 1.20301 0.76692 0.89002 0.74646 1.93245 1.96114 1.89404 1.35417 1.93278 1.38974 1.96860 1.85591 1.93289 1.70610 1.75396 1.75720 1.21985 0.94033 1.02909 0.97551 1.21494 1.00511 0.99357 0.93487 1.22065 0.86494 0.99243 0.98864 1.61324 1.07878 1.55693 1.00904 1.21912 1.03514 0.94356 0.88273 1.20987 0.81644 0.89392 0.83876 1.90544 1.47990 1.26592 1.83458 1.42054 1.56036 1.16822 1.08983 1.18972 1.38472 0.98527 0.89171 0.92747 1.26093 0.97981 1.03253 0.94239 1.69811 1.47544 1.38059 1.02590 0.85386 0.78860 0.77314 0.80074 1.18372 1.20480 1.15127 0.92882 0.90065 0.90723 0.74172 0.91669 0.88245 0.93167 0.90411 0.93134 0.93003 0.90029 0.85744 0.77678 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.29 71.98 0.60 -1.59 16 2 C 0.08 1.19 2.15 44.94 0.10 1.28 16 3 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.15 2.49 2.25 45.04 0.10 2.59 16 5 H 0.11 1.62 7.58 -2.39 -0.02 1.61 16 6 N -0.67 -13.27 3.83 -442.30 -1.69 -14.97 16 7 C 0.49 10.82 7.32 87.66 0.64 11.46 16 8 O -0.51 -13.24 16.28 -3.02 -0.05 -13.29 16 9 C 0.45 10.06 3.43 71.23 0.24 10.31 16 10 F -0.16 -3.76 16.92 44.97 0.76 -3.00 16 11 F -0.17 -3.64 17.30 44.97 0.78 -2.86 16 12 F -0.17 -4.00 17.30 44.97 0.78 -3.22 16 13 C -0.13 -2.04 5.67 30.67 0.17 -1.87 16 14 C -0.11 -2.31 5.93 30.65 0.18 -2.13 16 15 C 0.06 1.47 5.11 86.33 0.44 1.92 16 16 N -0.53 -12.52 3.53 -875.66 -3.09 -15.61 16 17 C 0.05 1.29 5.31 85.56 0.45 1.75 16 18 C 0.45 18.74 7.49 87.66 0.66 19.40 16 19 O -0.60 -30.99 14.73 -3.05 -0.04 -31.03 16 20 N -0.60 -26.51 5.09 -306.98 -1.56 -28.07 16 21 C -0.32 -18.29 10.16 84.04 0.85 -17.44 16 22 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.94 -56.07 13.96 21.66 0.30 -55.76 16 25 Si 0.96 37.66 27.74 68.60 1.90 39.57 16 26 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 27 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 29 H 0.05 0.95 7.67 -2.39 -0.02 0.93 16 30 H 0.08 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.07 0.93 6.41 -2.39 -0.02 0.92 16 32 H 0.42 9.28 7.95 -92.71 -0.74 8.54 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.28 7.73 -2.39 -0.02 1.26 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.68 6.69 -2.39 -0.02 1.66 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.70 8.00 -2.39 -0.02 1.69 16 40 H 0.12 2.56 5.43 -2.39 -0.01 2.55 16 41 H 0.39 14.14 5.76 -92.71 -0.53 13.60 16 42 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -74.26 353.77 2.75 -71.51 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.24 Total: 31.55 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 4.91 Total: 25.19 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -6.05 Total: -114.41 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.09 Total: -44.32 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 2.32 Total: -9.08 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.57 kcal Total: -74.26 2.75 -71.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654048514.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.310 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds