Wall clock time and date at job start Tue Mar 31 2020 21:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35980 * 117.00015 * 2 1 4 4 C 1.38544 * 120.08233 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01308 * 179.97438 * 4 3 2 6 6 C 1.38276 * 120.17813 * 0.02562 * 5 4 3 7 7 N 1.48028 * 119.91483 * 180.02562 * 6 5 4 8 8 O 1.21797 * 119.99732 * 0.02562 * 7 6 5 9 9 O 1.21797 * 119.99646 * 180.02562 * 7 6 5 10 10 C 1.38189 * 120.16662 * 359.76606 * 6 5 4 11 11 C 1.38725 * 119.98384 * 0.48707 * 10 6 5 12 12 N 1.40130 * 120.09140 * 179.76469 * 11 10 6 13 13 C 1.34772 * 119.99822 * 335.19659 * 12 11 10 14 14 O 1.21293 * 120.00428 * 354.46418 * 13 12 11 15 15 C 1.50698 * 119.99963 * 174.46636 * 13 12 11 16 16 H 1.08995 * 109.47455 * 59.99715 * 15 13 12 17 17 C 1.53004 * 109.46817 * 299.99587 * 15 13 12 18 18 N 1.46902 * 109.47249 * 180.02562 * 15 13 12 19 19 C 1.46897 * 110.99911 * 204.99768 * 18 15 13 20 20 H 1.08995 * 109.47159 * 324.99865 * 19 18 15 21 21 C 1.53001 * 109.47294 * 84.99776 * 19 18 15 22 22 C 1.50701 * 109.47049 * 204.99873 * 19 18 15 23 23 H 1.08001 * 120.00288 * 359.97438 * 22 19 18 24 24 C 1.37882 * 120.00040 * 180.02562 * 22 19 18 25 25 N 1.31518 * 119.99807 * 359.97438 * 24 22 19 26 26 Si 1.86792 * 120.00091 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47436 * 59.99784 * 26 24 22 28 28 H 1.48499 * 109.47390 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47110 * 300.00314 * 26 24 22 30 30 H 1.08999 * 109.47252 * 59.99715 * 1 2 3 31 31 H 1.08994 * 109.47255 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46949 * 300.00329 * 1 2 3 33 33 H 1.07996 * 119.99644 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.90667 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00926 * 180.26337 * 10 6 5 36 36 H 0.97000 * 119.99706 * 155.19912 * 12 11 10 37 37 H 1.09000 * 109.47285 * 60.00164 * 17 15 13 38 38 H 1.09001 * 109.46763 * 179.97438 * 17 15 13 39 39 H 1.08995 * 109.47213 * 300.00276 * 17 15 13 40 40 H 1.00901 * 111.00152 * 81.04176 * 18 15 13 41 41 H 1.08997 * 109.47185 * 179.97438 * 21 19 18 42 42 H 1.09005 * 109.46961 * 300.00311 * 21 19 18 43 43 H 1.09008 * 109.46939 * 59.99649 * 21 19 18 44 44 H 0.96993 * 119.99813 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3033 3.6806 0.0005 7 7 3.9708 5.0018 0.0017 8 8 3.3040 6.0210 0.0036 9 8 5.1869 5.0696 0.0007 10 6 4.0615 2.5253 0.0043 11 6 3.4373 1.2864 -0.0015 12 7 4.2040 0.1135 -0.0026 13 6 5.4611 0.1306 -0.4882 14 8 5.8941 1.1335 -1.0153 15 6 6.3289 -1.0964 -0.3762 16 1 5.8551 -1.9257 -0.9013 17 6 6.5073 -1.4619 1.0988 18 7 7.6423 -0.8235 -0.9748 19 6 8.2838 -2.0658 -1.4255 20 1 8.0309 -2.8746 -0.7401 21 6 7.7889 -2.4146 -2.8306 22 6 9.7788 -1.8784 -1.4515 23 1 10.2095 -0.9310 -1.1626 24 6 10.5970 -2.9161 -1.8452 25 7 10.0726 -4.0696 -2.1975 26 14 12.4501 -2.6836 -1.8782 27 1 12.9309 -2.3452 -0.5145 28 1 13.0985 -3.9390 -2.3349 29 1 12.7941 -1.5813 -2.8119 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2149 2.3196 0.0005 34 1 1.3339 4.5112 0.0019 35 1 5.1397 2.5869 0.0082 36 1 3.8298 -0.7108 0.3460 37 1 5.5329 -1.6642 1.5435 38 1 7.1346 -2.3496 1.1798 39 1 6.9810 -0.6326 1.6239 40 1 8.2363 -0.3229 -0.3308 41 1 8.2652 -3.3362 -3.1652 42 1 6.7075 -2.5501 -2.8117 43 1 8.0418 -1.6057 -3.5161 44 1 10.6481 -4.7994 -2.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654900375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:14 Heat of formation + Delta-G solvation = -36.428493 kcal Electronic energy + Delta-G solvation = -29168.638390 eV Core-core repulsion = 24897.460425 eV Total energy + Delta-G solvation = -4271.177965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23499 -41.21056 -39.75686 -37.94835 -36.55491 -36.24768 -35.01994 -33.16831 -31.48377 -30.99697 -29.84752 -28.26625 -27.05564 -26.10550 -25.31513 -24.59958 -23.03155 -22.30982 -20.45212 -19.79342 -19.49167 -18.73381 -18.65840 -17.61174 -17.50585 -16.86665 -16.60848 -16.44940 -15.91658 -15.35716 -14.88571 -14.78834 -14.32388 -14.12645 -13.90457 -13.86756 -13.48917 -13.37177 -12.79664 -12.52545 -12.43996 -12.15417 -11.99617 -11.88855 -11.58423 -11.56037 -11.24812 -11.12737 -11.12208 -10.94448 -10.85585 -10.77800 -10.49106 -10.18197 -10.07975 -9.63672 -9.38664 -8.92211 -8.51642 -8.40739 -7.38998 -6.07607 -4.13669 -0.26407 0.56154 1.19736 1.34608 2.43084 2.55955 2.76083 3.08732 3.30672 3.34799 3.39013 3.99592 4.16004 4.36003 4.38780 4.45723 4.54261 4.57043 4.79380 4.91807 5.04042 5.11048 5.13819 5.24177 5.30515 5.37724 5.42402 5.47144 5.72185 5.81878 5.98353 6.16089 6.27576 6.31193 6.60924 6.76426 7.04672 7.09752 7.19942 7.40533 7.64123 7.73502 7.80378 8.14476 8.19476 8.27640 8.55611 8.95263 9.52548 10.98841 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.002737 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.745907 B =10226.349326 C =11749.209567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.143 3.857 4 C -0.188 4.188 5 C -0.040 4.040 6 C -0.058 4.058 7 N 0.034 4.966 8 O -0.172 6.172 9 O -0.151 6.151 10 C -0.043 4.043 11 C 0.141 3.859 12 N -0.669 5.669 13 C 0.516 3.484 14 O -0.489 6.489 15 C 0.074 3.926 16 H 0.103 0.897 17 C -0.177 4.177 18 N -0.665 5.665 19 C 0.215 3.785 20 H 0.005 0.995 21 C -0.127 4.127 22 C -0.519 4.519 23 H 0.061 0.939 24 C 0.063 3.937 25 N -0.891 5.891 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.275 1.275 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.184 0.816 36 H 0.418 0.582 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.341 0.659 41 H 0.083 0.917 42 H 0.001 0.999 43 H 0.034 0.966 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.468 6.606 8.075 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.094 3.906 4 C -0.208 4.208 5 C -0.061 4.061 6 C -0.142 4.142 7 N 0.553 4.447 8 O -0.385 6.385 9 O -0.369 6.369 10 C -0.064 4.064 11 C 0.043 3.957 12 N -0.316 5.316 13 C 0.304 3.696 14 O -0.360 6.360 15 C -0.041 4.041 16 H 0.121 0.879 17 C -0.236 4.236 18 N -0.296 5.296 19 C 0.108 3.892 20 H 0.023 0.977 21 C -0.185 4.185 22 C -0.558 4.558 23 H 0.080 0.920 24 C -0.139 4.139 25 N -0.530 5.530 26 Si 0.726 3.274 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.201 1.201 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.201 0.799 36 H 0.255 0.745 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.160 0.840 41 H 0.101 0.899 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.487 6.388 6.977 25.321 hybrid contribution 0.818 -0.315 0.872 1.236 sum -22.670 6.073 7.848 24.747 Atomic orbital electron populations 1.23237 0.76971 1.04978 1.01919 1.86096 1.22539 1.25522 1.87615 1.19019 0.90502 0.85598 0.95491 1.20985 1.00868 0.90169 1.08810 1.20727 0.91447 0.99471 0.94410 1.20757 0.92817 0.83119 1.17497 1.43463 1.01189 1.02641 0.97415 1.94497 1.65238 1.24595 1.54127 1.94606 0.95535 1.93814 1.52953 1.21134 1.03853 0.87772 0.93666 1.16779 0.86821 0.87516 1.04548 1.43714 1.14774 1.10295 1.62812 1.21614 0.80426 0.91499 0.76065 1.90667 1.72014 1.33839 1.39469 1.21402 0.94263 0.93237 0.95173 0.87911 1.22487 1.02172 1.03325 0.95629 1.60427 1.01422 1.25631 1.42164 1.19152 0.92901 0.84439 0.92672 0.97698 1.21769 0.95400 1.02421 0.98945 1.21196 0.90470 0.98639 1.45477 0.92044 1.24896 0.98984 0.95051 0.94934 1.69875 1.35189 1.02914 1.44987 0.86554 0.84913 0.77401 0.78524 1.20266 1.21328 1.20095 0.91924 0.87352 0.91985 0.82858 0.82729 0.79883 0.74473 0.92713 0.90371 0.92057 0.84006 0.89874 0.97950 0.94713 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.26 9.91 -19.68 -0.19 -2.45 16 3 C 0.14 1.28 6.70 -39.07 -0.26 1.02 16 4 C -0.19 -1.34 9.04 -39.46 -0.36 -1.70 16 5 C -0.04 -0.36 9.55 -39.56 -0.38 -0.74 16 6 C -0.06 -0.73 6.85 -79.94 -0.55 -1.27 16 7 N 0.03 0.51 4.45 33.96 0.15 0.66 16 8 O -0.17 -2.48 18.44 -29.46 -0.54 -3.02 16 9 O -0.15 -2.53 18.44 -29.46 -0.54 -3.07 16 10 C -0.04 -0.58 8.22 -39.42 -0.32 -0.90 16 11 C 0.14 1.66 6.45 -83.49 -0.54 1.12 16 12 N -0.67 -7.87 5.14 -9.75 -0.05 -7.92 16 13 C 0.52 8.04 7.03 -10.99 -0.08 7.96 16 14 O -0.49 -9.42 13.60 5.55 0.08 -9.35 16 15 C 0.07 1.20 2.81 -68.86 -0.19 1.00 16 16 H 0.10 1.64 7.11 -51.93 -0.37 1.27 16 17 C -0.18 -2.36 9.05 37.16 0.34 -2.02 16 18 N -0.66 -13.87 5.54 -102.17 -0.57 -14.43 16 19 C 0.22 5.20 2.41 -68.87 -0.17 5.04 16 20 H 0.01 0.14 7.11 -51.93 -0.37 -0.23 16 21 C -0.13 -3.10 9.18 37.16 0.34 -2.76 16 22 C -0.52 -13.95 8.59 -34.44 -0.30 -14.24 16 23 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 25 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 26 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 31 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.12 7.66 -51.93 -0.40 -0.28 16 33 H 0.15 0.55 6.30 -52.49 -0.33 0.22 16 34 H 0.16 1.08 7.60 -52.48 -0.40 0.68 16 35 H 0.18 2.94 5.34 -52.49 -0.28 2.66 16 36 H 0.42 3.79 7.94 -40.82 -0.32 3.46 16 37 H 0.05 0.55 7.70 -51.93 -0.40 0.15 16 38 H 0.08 1.16 7.43 -51.93 -0.39 0.78 16 39 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 40 H 0.34 7.12 7.96 -39.29 -0.31 6.81 16 41 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 42 H 0.00 0.03 7.43 -51.93 -0.39 -0.35 16 43 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -32.48 372.34 -7.49 -39.97 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.47 Total: 6.88 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.56 Total: -4.81 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.16 Total: -45.83 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.21 Total: -17.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.48 -7.49 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654900375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.540 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds