Wall clock time and date at job start Tue Mar 31 2020 21:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35980 * 117.00015 * 2 1 4 4 C 1.38544 * 120.08233 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01308 * 179.97438 * 4 3 2 6 6 C 1.38276 * 120.17813 * 0.02562 * 5 4 3 7 7 N 1.48028 * 119.91483 * 180.02562 * 6 5 4 8 8 O 1.21797 * 119.99732 * 0.02562 * 7 6 5 9 9 O 1.21797 * 119.99646 * 180.02562 * 7 6 5 10 10 C 1.38189 * 120.16662 * 359.76606 * 6 5 4 11 11 C 1.38725 * 119.98384 * 0.48707 * 10 6 5 12 12 N 1.40130 * 120.09140 * 179.76469 * 11 10 6 13 13 C 1.34772 * 119.99822 * 335.19659 * 12 11 10 14 14 O 1.21293 * 120.00428 * 354.46418 * 13 12 11 15 15 C 1.50698 * 119.99963 * 174.46636 * 13 12 11 16 16 H 1.08995 * 109.47455 * 59.99715 * 15 13 12 17 17 C 1.53004 * 109.46817 * 299.99587 * 15 13 12 18 18 N 1.46902 * 109.47249 * 180.02562 * 15 13 12 19 19 C 1.46897 * 110.99911 * 204.99768 * 18 15 13 20 20 H 1.08995 * 109.47159 * 324.99865 * 19 18 15 21 21 C 1.53001 * 109.47294 * 84.99776 * 19 18 15 22 22 C 1.50701 * 109.47049 * 204.99873 * 19 18 15 23 23 H 1.08001 * 120.00288 * 359.97438 * 22 19 18 24 24 C 1.37882 * 120.00040 * 180.02562 * 22 19 18 25 25 N 1.31518 * 119.99807 * 359.97438 * 24 22 19 26 26 Si 1.86792 * 120.00091 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47436 * 59.99784 * 26 24 22 28 28 H 1.48499 * 109.47390 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47110 * 300.00314 * 26 24 22 30 30 H 1.08999 * 109.47252 * 59.99715 * 1 2 3 31 31 H 1.08994 * 109.47255 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46949 * 300.00329 * 1 2 3 33 33 H 1.07996 * 119.99644 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.90667 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00926 * 180.26337 * 10 6 5 36 36 H 0.97000 * 119.99706 * 155.19912 * 12 11 10 37 37 H 1.09000 * 109.47285 * 60.00164 * 17 15 13 38 38 H 1.09001 * 109.46763 * 179.97438 * 17 15 13 39 39 H 1.08995 * 109.47213 * 300.00276 * 17 15 13 40 40 H 1.00901 * 111.00152 * 81.04176 * 18 15 13 41 41 H 1.08997 * 109.47185 * 179.97438 * 21 19 18 42 42 H 1.09005 * 109.46961 * 300.00311 * 21 19 18 43 43 H 1.09008 * 109.46939 * 59.99649 * 21 19 18 44 44 H 0.96993 * 119.99813 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3033 3.6806 0.0005 7 7 3.9708 5.0018 0.0017 8 8 3.3040 6.0210 0.0036 9 8 5.1869 5.0696 0.0007 10 6 4.0615 2.5253 0.0043 11 6 3.4373 1.2864 -0.0015 12 7 4.2040 0.1135 -0.0026 13 6 5.4611 0.1306 -0.4882 14 8 5.8941 1.1335 -1.0153 15 6 6.3289 -1.0964 -0.3762 16 1 5.8551 -1.9257 -0.9013 17 6 6.5073 -1.4619 1.0988 18 7 7.6423 -0.8235 -0.9748 19 6 8.2838 -2.0658 -1.4255 20 1 8.0309 -2.8746 -0.7401 21 6 7.7889 -2.4146 -2.8306 22 6 9.7788 -1.8784 -1.4515 23 1 10.2095 -0.9310 -1.1626 24 6 10.5970 -2.9161 -1.8452 25 7 10.0726 -4.0696 -2.1975 26 14 12.4501 -2.6836 -1.8782 27 1 12.9309 -2.3452 -0.5145 28 1 13.0985 -3.9390 -2.3349 29 1 12.7941 -1.5813 -2.8119 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2149 2.3196 0.0005 34 1 1.3339 4.5112 0.0019 35 1 5.1397 2.5869 0.0082 36 1 3.8298 -0.7108 0.3460 37 1 5.5329 -1.6642 1.5435 38 1 7.1346 -2.3496 1.1798 39 1 6.9810 -0.6326 1.6239 40 1 8.2363 -0.3229 -0.3308 41 1 8.2652 -3.3362 -3.1652 42 1 6.7075 -2.5501 -2.8117 43 1 8.0418 -1.6057 -3.5161 44 1 10.6481 -4.7994 -2.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654900375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:12 Heat of formation + Delta-G solvation = -59.225175 kcal Electronic energy + Delta-G solvation = -29169.626929 eV Core-core repulsion = 24897.460425 eV Total energy + Delta-G solvation = -4272.166503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.28708 -42.13205 -40.74791 -38.75000 -37.84268 -37.65971 -36.11302 -34.98894 -32.49168 -32.27668 -31.01999 -28.76394 -28.68692 -27.30375 -26.96681 -25.78559 -24.00860 -23.26475 -21.95278 -21.19678 -20.59047 -19.78352 -19.36327 -18.98065 -18.61532 -17.95310 -17.85642 -17.29499 -16.92181 -16.69512 -16.25042 -15.90555 -15.58699 -15.42676 -14.94365 -14.88539 -14.49280 -14.35573 -14.20502 -13.83285 -13.53417 -13.42131 -13.31575 -12.84588 -12.73660 -12.64136 -12.50817 -12.44474 -12.37725 -12.33467 -12.32262 -12.31076 -12.19978 -11.96653 -11.90428 -10.98483 -10.81894 -10.56552 -10.20609 -9.28793 -9.06285 -8.14916 -6.27306 -1.24793 -0.24288 0.23373 0.38039 1.41852 1.43310 1.44118 1.51167 1.67867 1.92511 2.21999 2.41526 3.14245 3.26180 3.44857 3.51942 3.60820 3.61573 3.85559 4.06732 4.13167 4.21283 4.35203 4.36852 4.43949 4.63108 4.66546 4.72448 4.75802 4.80240 4.84489 4.90595 5.03529 5.17365 5.18384 5.18564 5.31644 5.44095 5.65242 5.82447 5.99346 6.17705 6.23176 6.42894 6.48911 6.71774 6.93265 7.02976 7.42444 8.90516 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.002737 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.745907 B =10226.349326 C =11749.209567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.312 6.312 3 C 0.167 3.833 4 C -0.170 4.170 5 C -0.021 4.021 6 C -0.082 4.082 7 N 0.037 4.963 8 O -0.140 6.140 9 O -0.232 6.232 10 C -0.061 4.061 11 C 0.116 3.884 12 N -0.650 5.650 13 C 0.521 3.479 14 O -0.535 6.535 15 C 0.072 3.928 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.678 5.678 19 C 0.223 3.777 20 H -0.008 1.008 21 C -0.117 4.117 22 C -0.541 4.541 23 H 0.053 0.947 24 C 0.020 3.980 25 N -0.913 5.913 26 Si 0.957 3.043 27 H -0.270 1.270 28 H -0.281 1.281 29 H -0.278 1.278 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.204 0.796 34 H 0.183 0.817 35 H 0.148 0.852 36 H 0.432 0.568 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.337 0.663 41 H 0.062 0.938 42 H 0.025 0.975 43 H 0.017 0.983 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.533 6.183 8.974 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.224 6.224 3 C 0.117 3.883 4 C -0.189 4.189 5 C -0.041 4.041 6 C -0.166 4.166 7 N 0.550 4.450 8 O -0.365 6.365 9 O -0.431 6.431 10 C -0.083 4.083 11 C 0.019 3.981 12 N -0.298 5.298 13 C 0.309 3.691 14 O -0.409 6.409 15 C -0.042 4.042 16 H 0.126 0.874 17 C -0.225 4.225 18 N -0.309 5.309 19 C 0.116 3.884 20 H 0.010 0.990 21 C -0.175 4.175 22 C -0.579 4.579 23 H 0.071 0.929 24 C -0.180 4.180 25 N -0.552 5.552 26 Si 0.783 3.217 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.203 1.203 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.221 0.779 34 H 0.201 0.799 35 H 0.165 0.835 36 H 0.272 0.728 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.155 0.845 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.463 5.900 7.908 29.182 hybrid contribution 1.696 -0.214 0.616 1.817 sum -25.767 5.685 8.524 27.730 Atomic orbital electron populations 1.23681 0.74296 1.06834 1.03721 1.86121 1.25166 1.24529 1.86608 1.19037 0.89313 0.87103 0.92859 1.21492 1.02911 0.88256 1.06277 1.21170 0.89569 1.01545 0.91809 1.20908 0.94090 0.81222 1.20398 1.43816 1.00956 1.03583 0.96667 1.94425 1.64776 1.25657 1.51677 1.94624 0.96749 1.94348 1.57382 1.20860 1.02550 0.89377 0.95541 1.16834 0.88231 0.86402 1.06600 1.43317 1.13488 1.11182 1.61846 1.21341 0.81480 0.90395 0.75856 1.90678 1.73233 1.35172 1.41831 1.21469 0.92060 0.93833 0.96829 0.87414 1.22368 1.04156 1.02359 0.93659 1.60256 1.03031 1.24138 1.43453 1.18898 0.91983 0.85288 0.92259 0.99034 1.21612 0.96678 1.00575 0.98644 1.21526 0.92286 0.98439 1.45672 0.92879 1.25609 1.02976 0.94836 0.94592 1.69974 1.36470 1.03400 1.45374 0.85626 0.80160 0.77292 0.78623 1.19517 1.20612 1.20347 0.90410 0.85781 0.89727 0.77944 0.79941 0.83479 0.72751 0.88640 0.91891 0.92311 0.84493 0.91923 0.95644 0.96362 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.20 9.91 -93.33 -0.92 -4.12 16 3 C 0.17 2.37 6.70 22.60 0.15 2.52 16 4 C -0.17 -1.54 9.04 22.35 0.20 -1.34 16 5 C -0.02 -0.30 9.55 22.28 0.21 -0.09 16 6 C -0.08 -2.03 6.85 36.37 0.25 -1.78 16 7 N 0.04 1.14 4.45 -46.46 -0.21 0.93 16 8 O -0.14 -3.95 18.44 18.89 0.35 -3.60 16 9 O -0.23 -8.61 18.44 18.89 0.35 -8.26 16 10 C -0.06 -1.72 8.22 22.37 0.18 -1.54 16 11 C 0.12 2.60 6.45 38.19 0.25 2.85 16 12 N -0.65 -14.75 5.14 -303.13 -1.56 -16.31 16 13 C 0.52 16.60 7.03 87.66 0.62 17.22 16 14 O -0.53 -21.93 13.60 -3.07 -0.04 -21.97 16 15 C 0.07 2.36 2.81 44.17 0.12 2.49 16 16 H 0.11 3.39 7.11 -2.39 -0.02 3.37 16 17 C -0.17 -4.37 9.05 71.98 0.65 -3.72 16 18 N -0.68 -29.37 5.54 -477.16 -2.64 -32.02 16 19 C 0.22 11.13 2.41 44.17 0.11 11.24 16 20 H -0.01 -0.41 7.11 -2.39 -0.02 -0.42 16 21 C -0.12 -5.82 9.18 71.98 0.66 -5.16 16 22 C -0.54 -29.90 8.59 25.60 0.22 -29.68 16 23 H 0.05 2.95 7.62 -2.91 -0.02 2.93 16 24 C 0.02 1.08 5.30 84.66 0.45 1.53 16 25 N -0.91 -51.52 11.32 21.45 0.24 -51.28 16 26 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 30 H 0.08 -0.09 7.66 -2.39 -0.02 -0.11 16 31 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.08 -0.22 7.66 -2.38 -0.02 -0.24 16 33 H 0.20 -0.11 6.30 -2.91 -0.02 -0.12 16 34 H 0.18 1.64 7.60 -2.91 -0.02 1.62 16 35 H 0.15 5.28 5.34 -2.91 -0.02 5.26 16 36 H 0.43 6.89 7.94 -92.71 -0.74 6.16 16 37 H 0.09 1.70 7.70 -2.39 -0.02 1.68 16 38 H 0.06 1.87 7.43 -2.39 -0.02 1.85 16 39 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 40 H 0.34 14.85 7.96 -89.69 -0.71 14.13 16 41 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 42 H 0.02 1.09 7.43 -2.38 -0.02 1.08 16 43 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -76.40 372.34 2.40 -74.00 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.38 Total: 21.09 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.19 Total: -4.35 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -4.16 Total: -98.68 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.27 Total: -37.95 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -76.40 2.40 -74.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654900375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.777 kcal (2) G-P(sol) polarization free energy of solvation -76.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds