Wall clock time and date at job start Tue Mar 31 2020 21:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35978 * 116.99653 * 2 1 4 4 C 1.38556 * 120.08491 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.01452 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.17745 * 359.97438 * 5 4 3 7 7 N 1.48018 * 119.91603 * 180.02562 * 6 5 4 8 8 O 1.21804 * 119.99761 * 359.97438 * 7 6 5 9 9 O 1.21795 * 120.00381 * 180.02562 * 7 6 5 10 10 C 1.38191 * 120.16524 * 0.02562 * 6 5 4 11 11 C 1.38725 * 119.98908 * 359.74499 * 10 6 5 12 12 N 1.40116 * 120.09436 * 180.27212 * 11 10 6 13 13 C 1.34781 * 120.00002 * 24.79429 * 12 11 10 14 14 O 1.21297 * 119.99818 * 5.57672 * 13 12 11 15 15 C 1.50693 * 120.00202 * 185.57901 * 13 12 11 16 16 H 1.08997 * 109.47075 * 300.00130 * 15 13 12 17 17 C 1.53000 * 109.46900 * 59.99507 * 15 13 12 18 18 N 1.46894 * 109.47505 * 179.97438 * 15 13 12 19 19 C 1.46897 * 111.00396 * 159.82517 * 18 15 13 20 20 H 1.09006 * 109.47093 * 39.87658 * 19 18 15 21 21 C 1.53000 * 109.47491 * 159.87870 * 19 18 15 22 22 C 1.50697 * 109.47229 * 279.88197 * 19 18 15 23 23 H 1.08000 * 120.00164 * 359.97438 * 22 19 18 24 24 C 1.37876 * 120.00121 * 179.97438 * 22 19 18 25 25 N 1.31521 * 120.00271 * 179.97438 * 24 22 19 26 26 Si 1.86799 * 120.00037 * 359.97438 * 24 22 19 27 27 H 1.48495 * 109.47504 * 90.00054 * 26 24 22 28 28 H 1.48504 * 109.47302 * 210.00388 * 26 24 22 29 29 H 1.48506 * 109.46973 * 329.99831 * 26 24 22 30 30 H 1.08997 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47069 * 300.00111 * 1 2 3 32 32 H 1.09001 * 109.46783 * 59.99749 * 1 2 3 33 33 H 1.08000 * 119.99041 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.90816 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.00625 * 180.02562 * 10 6 5 36 36 H 0.96993 * 120.00270 * 204.78793 * 12 11 10 37 37 H 1.08999 * 109.47624 * 295.00446 * 17 15 13 38 38 H 1.09000 * 109.47428 * 55.01305 * 17 15 13 39 39 H 1.09004 * 109.47084 * 175.00447 * 17 15 13 40 40 H 1.00900 * 111.00282 * 283.78562 * 18 15 13 41 41 H 1.08997 * 109.47054 * 185.04753 * 21 19 18 42 42 H 1.08996 * 109.46564 * 305.04748 * 21 19 18 43 43 H 1.08999 * 109.47135 * 65.04690 * 21 19 18 44 44 H 0.97001 * 120.00100 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3747 -0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3032 3.6808 0.0016 7 7 3.9707 5.0019 0.0027 8 8 3.3038 6.0211 0.0018 9 8 5.1867 5.0699 0.0037 10 6 4.0614 2.5254 0.0021 11 6 3.4373 1.2865 0.0064 12 7 4.2039 0.1137 0.0127 13 6 5.4588 0.1315 0.5043 14 8 5.8889 1.1349 1.0328 15 6 6.3275 -1.0952 0.3971 16 1 5.8514 -1.9244 0.9205 17 6 6.5129 -1.4617 -1.0767 18 7 7.6379 -0.8216 1.0018 19 6 8.3272 -2.0707 1.3523 20 1 8.1644 -2.8083 0.5664 21 6 9.8265 -1.8025 1.4975 22 6 7.7824 -2.5965 2.6552 23 1 7.0025 -2.0566 3.1716 24 6 8.2797 -3.7668 3.1881 25 7 7.8046 -4.2255 4.3256 26 14 9.6281 -4.7011 2.2947 27 1 10.9543 -4.2188 2.7569 28 1 9.5006 -6.1520 2.5843 29 1 9.5014 -4.4753 0.8324 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.2147 2.3195 -0.0005 34 1 1.3338 4.5112 0.0000 35 1 5.1396 2.5870 0.0038 36 1 3.8316 -0.7110 -0.3365 37 1 5.5522 -1.7505 -1.5030 38 1 6.9069 -0.6016 -1.6182 39 1 7.2118 -2.2941 -1.1590 40 1 8.2064 -0.2539 0.3914 41 1 10.3490 -2.7436 1.6688 42 1 10.2025 -1.3389 0.5855 43 1 9.9959 -1.1339 2.3415 44 1 8.1542 -5.0491 4.7003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654900376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:19 Heat of formation + Delta-G solvation = -26.720898 kcal Electronic energy + Delta-G solvation = -29345.787974 eV Core-core repulsion = 25075.030962 eV Total energy + Delta-G solvation = -4270.757012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.22066 -41.18090 -39.74142 -37.92692 -36.57013 -36.44613 -34.99743 -33.07389 -31.45765 -31.38159 -30.15799 -28.22465 -27.55716 -26.08060 -25.15675 -24.67894 -23.01326 -22.28166 -20.40691 -20.05413 -19.57401 -18.69197 -18.63898 -17.52534 -17.34222 -16.78373 -16.67348 -16.51246 -16.18285 -15.30522 -15.03789 -14.77769 -14.45065 -14.26779 -14.00922 -13.83876 -13.44623 -13.35595 -12.90307 -12.76869 -12.67790 -12.33596 -12.16289 -11.95777 -11.84356 -11.55332 -11.35671 -11.25591 -11.20150 -11.11671 -10.87583 -10.83748 -10.51249 -10.35060 -9.73580 -9.55882 -9.36310 -9.27589 -8.60398 -8.37088 -7.52539 -6.09889 -4.08217 -0.24032 0.59396 1.22035 1.36307 2.47807 2.58964 2.77976 3.12699 3.22499 3.29317 3.33748 4.03062 4.19754 4.34827 4.40391 4.46413 4.58280 4.62967 4.79514 4.86617 4.97742 5.13538 5.14181 5.18847 5.25668 5.41103 5.43370 5.49146 5.71773 5.74602 5.97954 6.13700 6.19433 6.24840 6.32883 6.34755 6.48186 6.64919 6.70146 7.06272 7.22901 7.61473 7.65377 7.79984 8.08089 8.19517 8.66420 9.01352 9.52089 11.03433 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.002959 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.402590 B = 9458.833434 C =10680.800657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.145 3.855 4 C -0.189 4.189 5 C -0.040 4.040 6 C -0.059 4.059 7 N 0.035 4.965 8 O -0.172 6.172 9 O -0.153 6.153 10 C -0.043 4.043 11 C 0.142 3.858 12 N -0.668 5.668 13 C 0.520 3.480 14 O -0.492 6.492 15 C 0.080 3.920 16 H 0.122 0.878 17 C -0.181 4.181 18 N -0.652 5.652 19 C 0.185 3.815 20 H 0.003 0.997 21 C -0.153 4.153 22 C -0.502 4.502 23 H 0.080 0.920 24 C 0.068 3.932 25 N -0.899 5.899 26 Si 0.885 3.115 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.270 1.270 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.184 0.816 36 H 0.419 0.581 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.328 0.672 41 H 0.044 0.956 42 H 0.029 0.971 43 H 0.064 0.936 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.682 8.375 -14.456 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.095 3.905 4 C -0.208 4.208 5 C -0.060 4.060 6 C -0.143 4.143 7 N 0.554 4.446 8 O -0.385 6.385 9 O -0.371 6.371 10 C -0.064 4.064 11 C 0.044 3.956 12 N -0.315 5.315 13 C 0.308 3.692 14 O -0.363 6.363 15 C -0.035 4.035 16 H 0.139 0.861 17 C -0.240 4.240 18 N -0.282 5.282 19 C 0.077 3.923 20 H 0.021 0.979 21 C -0.211 4.211 22 C -0.540 4.540 23 H 0.098 0.902 24 C -0.133 4.133 25 N -0.537 5.537 26 Si 0.716 3.284 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.195 1.195 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.200 0.800 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.753 8.142 -13.271 22.871 hybrid contribution 0.671 -0.912 -1.270 1.701 sum -16.082 7.231 -14.541 22.855 Atomic orbital electron populations 1.23245 0.76938 1.05040 1.01890 1.86110 1.22570 1.25454 1.87511 1.19034 0.90522 0.85639 0.95264 1.20991 1.00889 0.90159 1.08807 1.20722 0.91440 0.99463 0.94391 1.20744 0.92823 0.83058 1.17659 1.43457 1.01158 1.02663 0.97358 1.94499 1.65238 1.24611 1.54145 1.94593 0.95610 1.93823 1.53053 1.21106 1.03767 0.87767 0.93809 1.16768 0.86838 0.87479 1.04532 1.43654 1.14915 1.10320 1.62565 1.21457 0.80581 0.91193 0.75973 1.90665 1.72265 1.33850 1.39526 1.21356 0.93337 0.94298 0.94487 0.86063 1.22523 1.02792 1.02591 0.96131 1.60101 1.01989 1.20078 1.46007 1.19652 0.89939 0.85907 0.96845 0.97935 1.22260 0.98070 1.00539 1.00244 1.21002 1.21707 1.06839 1.04487 0.90156 1.24952 0.96540 0.97078 0.94747 1.69889 1.43028 1.22126 1.18692 0.86910 0.82765 0.78331 0.80414 1.20541 1.22491 1.19514 0.87303 0.91878 0.92020 0.82838 0.82739 0.79955 0.74376 0.92145 0.92380 0.90755 0.85415 0.93731 0.95167 0.91708 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.48 9.91 -19.67 -0.19 -2.68 16 3 C 0.14 1.38 6.70 -39.07 -0.26 1.12 16 4 C -0.19 -1.43 9.04 -39.46 -0.36 -1.78 16 5 C -0.04 -0.37 9.55 -39.56 -0.38 -0.75 16 6 C -0.06 -0.75 6.85 -79.95 -0.55 -1.30 16 7 N 0.04 0.52 4.45 33.96 0.15 0.67 16 8 O -0.17 -2.49 18.44 -29.46 -0.54 -3.04 16 9 O -0.15 -2.54 18.44 -29.46 -0.54 -3.08 16 10 C -0.04 -0.59 8.23 -39.42 -0.32 -0.91 16 11 C 0.14 1.72 6.45 -83.49 -0.54 1.18 16 12 N -0.67 -8.20 5.17 -9.75 -0.05 -8.25 16 13 C 0.52 8.27 7.03 -10.99 -0.08 8.19 16 14 O -0.49 -9.53 13.60 5.54 0.08 -9.45 16 15 C 0.08 1.30 2.84 -68.87 -0.20 1.10 16 16 H 0.12 2.16 7.49 -51.93 -0.39 1.77 16 17 C -0.18 -2.25 9.06 37.16 0.34 -1.92 16 18 N -0.65 -12.86 5.51 -102.18 -0.56 -13.42 16 19 C 0.18 4.12 2.05 -68.87 -0.14 3.98 16 20 H 0.00 0.07 5.81 -51.93 -0.30 -0.23 16 21 C -0.15 -3.24 8.69 37.16 0.32 -2.91 16 22 C -0.50 -13.69 8.79 -34.44 -0.30 -14.00 16 23 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 24 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 25 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 26 Si 0.89 21.18 24.32 -169.99 -4.13 17.04 16 27 H -0.28 -6.58 6.91 56.52 0.39 -6.19 16 28 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 33 H 0.15 0.62 6.30 -52.49 -0.33 0.29 16 34 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 35 H 0.18 2.90 5.34 -52.49 -0.28 2.62 16 36 H 0.42 4.06 8.04 -40.82 -0.33 3.73 16 37 H 0.06 0.58 7.86 -51.93 -0.41 0.17 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.99 6.96 -51.93 -0.36 0.63 16 40 H 0.33 5.87 8.18 -39.29 -0.32 5.54 16 41 H 0.04 0.97 3.42 -51.93 -0.18 0.79 16 42 H 0.03 0.53 8.03 -51.93 -0.42 0.11 16 43 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -34.22 366.02 -6.46 -40.68 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.38 Total: 7.33 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.57 Total: -5.09 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.31 Total: -47.24 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.21 Total: -18.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.13 Total: 17.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.22 -6.46 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654900376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.963 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds