Wall clock time and date at job start Tue Mar 31 2020 21:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35979 * 116.99690 * 2 1 4 4 C 1.38548 * 120.08381 * 359.72210 * 3 2 1 5 5 C 1.38246 * 120.01332 * 179.71713 * 4 3 2 6 6 C 1.38278 * 120.17768 * 0.56022 * 5 4 3 7 7 N 1.48018 * 119.91615 * 179.69558 * 6 5 4 8 8 O 1.21804 * 119.99956 * 180.02562 * 7 6 5 9 9 O 1.21795 * 120.00374 * 0.02562 * 7 6 5 10 10 C 1.38200 * 120.16521 * 359.72127 * 6 5 4 11 11 C 1.38723 * 119.98307 * 359.97438 * 10 6 5 12 12 N 1.40128 * 120.08652 * 179.97438 * 11 10 6 13 13 C 1.34770 * 119.99984 * 325.60492 * 12 11 10 14 14 O 1.21297 * 120.00185 * 4.07083 * 13 12 11 15 15 C 1.50698 * 120.00250 * 184.06632 * 13 12 11 16 16 H 1.09007 * 109.46791 * 59.99897 * 15 13 12 17 17 C 1.53005 * 109.47186 * 300.00453 * 15 13 12 18 18 N 1.46897 * 109.47457 * 180.02562 * 15 13 12 19 19 C 1.46901 * 110.99873 * 209.24021 * 18 15 13 20 20 H 1.08998 * 109.47772 * 329.43519 * 19 18 15 21 21 C 1.52997 * 109.47049 * 209.43365 * 19 18 15 22 22 C 1.50703 * 109.47047 * 89.43540 * 19 18 15 23 23 H 1.08001 * 119.99866 * 359.97438 * 22 19 18 24 24 C 1.37881 * 119.99915 * 180.02562 * 22 19 18 25 25 N 1.31511 * 120.00020 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99796 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.47312 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47367 * 119.99760 * 26 24 22 29 29 H 1.48501 * 109.46811 * 239.99356 * 26 24 22 30 30 H 1.08992 * 109.47490 * 300.00176 * 1 2 3 31 31 H 1.09003 * 109.47133 * 60.00251 * 1 2 3 32 32 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.99209 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.91025 * 180.25409 * 5 4 3 35 35 H 1.07994 * 120.00709 * 180.02562 * 10 6 5 36 36 H 0.96992 * 119.99761 * 145.60878 * 12 11 10 37 37 H 1.08989 * 109.46987 * 295.03120 * 17 15 13 38 38 H 1.09007 * 109.47078 * 55.03204 * 17 15 13 39 39 H 1.09002 * 109.47022 * 175.03055 * 17 15 13 40 40 H 1.00901 * 111.00048 * 333.18856 * 18 15 13 41 41 H 1.09009 * 109.47111 * 184.85230 * 21 19 18 42 42 H 1.09005 * 109.47333 * 304.84566 * 21 19 18 43 43 H 1.08995 * 109.47606 * 64.84992 * 21 19 18 44 44 H 0.97000 * 119.99791 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0058 5 6 1.9223 3.6057 0.0001 6 6 3.3031 3.6807 0.0001 7 7 3.9705 5.0019 -0.0003 8 8 5.1867 5.0698 -0.0008 9 8 3.3038 6.0211 -0.0003 10 6 4.0613 2.5254 0.0001 11 6 3.4372 1.2865 0.0005 12 7 4.2039 0.1136 -0.0001 13 6 5.3783 0.0766 -0.6603 14 8 5.8072 1.0790 -1.1917 15 6 6.1587 -1.2102 -0.7383 16 1 5.5549 -1.9719 -1.2318 17 6 6.5140 -1.6776 0.6747 18 7 7.3920 -0.9894 -1.5051 19 6 7.8137 -2.2189 -2.1894 20 1 7.5036 -3.0850 -1.6046 21 6 9.3364 -2.2230 -2.3385 22 6 7.1753 -2.2791 -3.5532 23 1 6.5213 -1.4836 -3.8788 24 6 7.4253 -3.3501 -4.3848 25 7 8.2212 -4.3189 -3.9880 26 14 6.6334 -3.4249 -6.0750 27 1 5.7873 -2.2217 -6.2790 28 1 7.6915 -3.4687 -7.1160 29 1 5.7914 -4.6442 -6.1735 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2147 2.3195 -0.0099 34 1 1.3337 4.5112 -0.0003 35 1 5.1395 2.5870 0.0005 36 1 3.8894 -0.6716 0.4746 37 1 7.1896 -0.9577 1.1363 38 1 5.6047 -1.7567 1.2707 39 1 7.0007 -2.6516 0.6235 40 1 7.2790 -0.2311 -2.1611 41 1 9.6421 -3.0920 -2.9213 42 1 9.6540 -1.3135 -2.8485 43 1 9.7980 -2.2665 -1.3520 44 1 8.3973 -5.0722 -4.5733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654900377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:26 Heat of formation + Delta-G solvation = -40.822122 kcal Electronic energy + Delta-G solvation = -29357.704405 eV Core-core repulsion = 25086.335918 eV Total energy + Delta-G solvation = -4271.368487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.24913 -41.21488 -39.80292 -37.97147 -36.56890 -36.04539 -35.06693 -33.10946 -31.49986 -31.06887 -29.87302 -28.24689 -27.23027 -26.11236 -25.09340 -24.53387 -22.88293 -22.26727 -20.33482 -19.84572 -19.58881 -18.72351 -18.67620 -17.58123 -17.50018 -16.87694 -16.60385 -16.50760 -16.10577 -15.34894 -14.93276 -14.78715 -14.51917 -14.28051 -13.87989 -13.84396 -13.38492 -13.03191 -12.78849 -12.51088 -12.09474 -12.04628 -11.95077 -11.87683 -11.57901 -11.35183 -11.27420 -11.26523 -11.14102 -11.03146 -10.89055 -10.79617 -10.30402 -10.18523 -10.06423 -9.62184 -9.42981 -9.14402 -8.51442 -8.45999 -7.44516 -6.06815 -4.19488 -0.27490 0.53817 1.18304 1.32907 2.45253 2.52308 2.75000 3.04892 3.21745 3.30847 3.35062 4.00078 4.15663 4.34503 4.35995 4.44708 4.55998 4.59947 4.79912 4.95027 5.04609 5.09772 5.14104 5.22238 5.36866 5.43993 5.50933 5.69757 5.72468 5.95767 6.14056 6.22574 6.29800 6.50079 6.61039 6.82671 7.11508 7.14736 7.25922 7.42308 7.62451 7.69370 8.01655 8.04801 8.08453 8.22032 8.57375 8.92921 9.48992 10.94208 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.003080 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.196604 B = 9087.773151 C = 9829.612502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.302 6.302 3 C 0.153 3.847 4 C -0.193 4.193 5 C -0.033 4.033 6 C -0.063 4.063 7 N 0.035 4.965 8 O -0.153 6.153 9 O -0.171 6.171 10 C -0.029 4.029 11 C 0.132 3.868 12 N -0.667 5.667 13 C 0.516 3.484 14 O -0.509 6.509 15 C 0.076 3.924 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.674 5.674 19 C 0.208 3.792 20 H 0.033 0.967 21 C -0.125 4.125 22 C -0.547 4.547 23 H 0.054 0.946 24 C 0.069 3.931 25 N -0.884 5.884 26 Si 0.889 3.111 27 H -0.275 1.275 28 H -0.282 1.282 29 H -0.284 1.284 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.179 0.821 36 H 0.419 0.581 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.347 0.653 41 H 0.084 0.916 42 H 0.025 0.975 43 H 0.014 0.986 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.095 7.853 12.448 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.103 3.897 4 C -0.213 4.213 5 C -0.053 4.053 6 C -0.147 4.147 7 N 0.554 4.446 8 O -0.371 6.371 9 O -0.384 6.384 10 C -0.050 4.050 11 C 0.035 3.965 12 N -0.314 5.314 13 C 0.305 3.695 14 O -0.382 6.382 15 C -0.037 4.037 16 H 0.099 0.901 17 C -0.192 4.192 18 N -0.309 5.309 19 C 0.101 3.899 20 H 0.051 0.949 21 C -0.183 4.183 22 C -0.586 4.586 23 H 0.072 0.928 24 C -0.134 4.134 25 N -0.523 5.523 26 Si 0.716 3.284 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.210 1.210 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.196 0.804 36 H 0.257 0.743 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.167 0.833 41 H 0.102 0.898 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.479 7.398 12.499 22.726 hybrid contribution -1.435 -0.129 -1.614 2.163 sum -18.914 7.269 10.885 23.001 Atomic orbital electron populations 1.23259 0.76945 1.05094 1.01920 1.86136 1.22562 1.25423 1.87299 1.19141 0.90674 0.85621 0.94247 1.21013 1.00957 0.90170 1.09116 1.20751 0.91441 0.99500 0.93635 1.20756 0.92866 0.83092 1.18016 1.43449 1.01169 1.02630 0.97381 1.94599 0.95569 1.93813 1.53071 1.94499 1.65242 1.24567 1.54103 1.21019 1.03424 0.87868 0.92728 1.16726 0.86789 0.87398 1.05615 1.43552 1.21437 1.12991 1.53442 1.21653 0.79693 0.92245 0.75880 1.90683 1.67294 1.35735 1.44447 1.21432 0.92846 0.91628 0.97839 0.90110 1.21786 1.00827 1.02909 0.93699 1.61066 1.26600 1.10871 1.32359 1.19249 0.93065 0.86065 0.91559 0.94869 1.21673 0.96966 1.01587 0.98110 1.21899 1.28835 1.06324 1.01571 0.92803 1.24914 0.94878 0.95489 0.98129 1.69884 1.35940 1.09767 1.36676 0.86595 0.79351 0.77847 0.84560 1.19940 1.20784 1.21006 0.91939 0.91887 0.87265 0.82774 0.82639 0.80387 0.74308 0.91691 0.93361 0.90929 0.83265 0.89771 0.95537 0.96734 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.30 -2.48 10.05 -19.67 -0.20 -2.68 16 3 C 0.15 1.45 6.70 -39.07 -0.26 1.19 16 4 C -0.19 -1.44 9.04 -39.46 -0.36 -1.80 16 5 C -0.03 -0.30 9.55 -39.56 -0.38 -0.68 16 6 C -0.06 -0.80 6.85 -79.95 -0.55 -1.34 16 7 N 0.04 0.52 4.45 33.96 0.15 0.67 16 8 O -0.15 -2.53 18.44 -29.46 -0.54 -3.07 16 9 O -0.17 -2.46 18.44 -29.46 -0.54 -3.00 16 10 C -0.03 -0.39 8.20 -39.42 -0.32 -0.72 16 11 C 0.13 1.60 6.33 -83.49 -0.53 1.07 16 12 N -0.67 -8.24 5.09 -9.75 -0.05 -8.29 16 13 C 0.52 8.34 7.03 -10.99 -0.08 8.26 16 14 O -0.51 -9.81 12.98 5.54 0.07 -9.74 16 15 C 0.08 1.31 2.83 -68.86 -0.19 1.12 16 16 H 0.08 1.47 7.72 -51.92 -0.40 1.07 16 17 C -0.13 -1.87 9.39 37.16 0.35 -1.52 16 18 N -0.67 -14.29 5.99 -102.17 -0.61 -14.90 16 19 C 0.21 5.07 2.39 -68.86 -0.16 4.90 16 20 H 0.03 0.85 7.47 -51.93 -0.39 0.47 16 21 C -0.12 -3.05 9.36 37.16 0.35 -2.70 16 22 C -0.55 -14.63 8.50 -34.44 -0.29 -14.93 16 23 H 0.05 1.47 7.67 -52.49 -0.40 1.07 16 24 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 25 N -0.88 -24.49 11.29 55.43 0.63 -23.86 16 26 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.06 0.15 7.67 -51.93 -0.40 -0.25 16 31 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 32 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.15 0.61 6.30 -52.49 -0.33 0.28 16 34 H 0.16 1.10 7.60 -52.49 -0.40 0.70 16 35 H 0.18 2.81 5.74 -52.49 -0.30 2.51 16 36 H 0.42 4.06 7.80 -40.82 -0.32 3.74 16 37 H 0.06 0.93 8.14 -51.94 -0.42 0.51 16 38 H 0.05 0.50 7.34 -51.93 -0.38 0.12 16 39 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 40 H 0.35 7.90 6.88 -39.29 -0.27 7.63 16 41 H 0.08 2.23 5.96 -51.92 -0.31 1.92 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -31.87 373.42 -7.55 -39.42 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.53 Total: 8.17 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.53 Total: -4.31 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.12 Total: -46.39 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.21 Total: -18.49 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.87 -7.55 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654900377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.399 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds