Wall clock time and date at job start Tue Mar 31 2020 21:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35979 * 116.99690 * 2 1 4 4 C 1.38548 * 120.08381 * 359.72210 * 3 2 1 5 5 C 1.38246 * 120.01332 * 179.71713 * 4 3 2 6 6 C 1.38278 * 120.17768 * 0.56022 * 5 4 3 7 7 N 1.48018 * 119.91615 * 179.69558 * 6 5 4 8 8 O 1.21804 * 119.99956 * 180.02562 * 7 6 5 9 9 O 1.21795 * 120.00374 * 0.02562 * 7 6 5 10 10 C 1.38200 * 120.16521 * 359.72127 * 6 5 4 11 11 C 1.38723 * 119.98307 * 359.97438 * 10 6 5 12 12 N 1.40128 * 120.08652 * 179.97438 * 11 10 6 13 13 C 1.34770 * 119.99984 * 325.60492 * 12 11 10 14 14 O 1.21297 * 120.00185 * 4.07083 * 13 12 11 15 15 C 1.50698 * 120.00250 * 184.06632 * 13 12 11 16 16 H 1.09007 * 109.46791 * 59.99897 * 15 13 12 17 17 C 1.53005 * 109.47186 * 300.00453 * 15 13 12 18 18 N 1.46897 * 109.47457 * 180.02562 * 15 13 12 19 19 C 1.46901 * 110.99873 * 209.24021 * 18 15 13 20 20 H 1.08998 * 109.47772 * 329.43519 * 19 18 15 21 21 C 1.52997 * 109.47049 * 209.43365 * 19 18 15 22 22 C 1.50703 * 109.47047 * 89.43540 * 19 18 15 23 23 H 1.08001 * 119.99866 * 359.97438 * 22 19 18 24 24 C 1.37881 * 119.99915 * 180.02562 * 22 19 18 25 25 N 1.31511 * 120.00020 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99796 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.47312 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47367 * 119.99760 * 26 24 22 29 29 H 1.48501 * 109.46811 * 239.99356 * 26 24 22 30 30 H 1.08992 * 109.47490 * 300.00176 * 1 2 3 31 31 H 1.09003 * 109.47133 * 60.00251 * 1 2 3 32 32 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.99209 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.91025 * 180.25409 * 5 4 3 35 35 H 1.07994 * 120.00709 * 180.02562 * 10 6 5 36 36 H 0.96992 * 119.99761 * 145.60878 * 12 11 10 37 37 H 1.08989 * 109.46987 * 295.03120 * 17 15 13 38 38 H 1.09007 * 109.47078 * 55.03204 * 17 15 13 39 39 H 1.09002 * 109.47022 * 175.03055 * 17 15 13 40 40 H 1.00901 * 111.00048 * 333.18856 * 18 15 13 41 41 H 1.09009 * 109.47111 * 184.85230 * 21 19 18 42 42 H 1.09005 * 109.47333 * 304.84566 * 21 19 18 43 43 H 1.08995 * 109.47606 * 64.84992 * 21 19 18 44 44 H 0.97000 * 119.99791 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0058 5 6 1.9223 3.6057 0.0001 6 6 3.3031 3.6807 0.0001 7 7 3.9705 5.0019 -0.0003 8 8 5.1867 5.0698 -0.0008 9 8 3.3038 6.0211 -0.0003 10 6 4.0613 2.5254 0.0001 11 6 3.4372 1.2865 0.0005 12 7 4.2039 0.1136 -0.0001 13 6 5.3783 0.0766 -0.6603 14 8 5.8072 1.0790 -1.1917 15 6 6.1587 -1.2102 -0.7383 16 1 5.5549 -1.9719 -1.2318 17 6 6.5140 -1.6776 0.6747 18 7 7.3920 -0.9894 -1.5051 19 6 7.8137 -2.2189 -2.1894 20 1 7.5036 -3.0850 -1.6046 21 6 9.3364 -2.2230 -2.3385 22 6 7.1753 -2.2791 -3.5532 23 1 6.5213 -1.4836 -3.8788 24 6 7.4253 -3.3501 -4.3848 25 7 8.2212 -4.3189 -3.9880 26 14 6.6334 -3.4249 -6.0750 27 1 5.7873 -2.2217 -6.2790 28 1 7.6915 -3.4687 -7.1160 29 1 5.7914 -4.6442 -6.1735 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2147 2.3195 -0.0099 34 1 1.3337 4.5112 -0.0003 35 1 5.1395 2.5870 0.0005 36 1 3.8894 -0.6716 0.4746 37 1 7.1896 -0.9577 1.1363 38 1 5.6047 -1.7567 1.2707 39 1 7.0007 -2.6516 0.6235 40 1 7.2790 -0.2311 -2.1611 41 1 9.6421 -3.0920 -2.9213 42 1 9.6540 -1.3135 -2.8485 43 1 9.7980 -2.2665 -1.3520 44 1 8.3973 -5.0722 -4.5733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654900377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:25 Heat of formation + Delta-G solvation = -62.833570 kcal Electronic energy + Delta-G solvation = -29358.658893 eV Core-core repulsion = 25086.335918 eV Total energy + Delta-G solvation = -4272.322975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.30461 -42.17798 -40.84056 -38.78963 -37.72813 -37.65027 -36.20792 -34.91237 -32.61952 -32.31525 -31.03834 -28.85925 -28.78623 -27.18409 -26.98888 -25.67447 -23.87345 -23.26151 -22.02066 -21.20918 -20.63506 -19.79126 -19.39736 -18.98862 -18.63396 -18.16420 -17.90111 -17.36537 -16.92112 -16.72174 -16.59696 -15.95331 -15.59167 -15.37562 -15.12378 -14.74915 -14.51849 -14.26570 -14.06434 -13.70945 -13.53367 -13.34007 -13.14149 -12.97210 -12.82984 -12.74608 -12.53604 -12.46448 -12.39063 -12.35574 -12.32141 -12.25864 -12.06308 -11.96797 -11.84267 -11.15348 -10.92481 -10.53592 -10.25918 -9.43551 -9.20827 -8.11937 -6.33027 -1.26447 -0.28995 0.20931 0.35349 1.31879 1.33730 1.37808 1.47280 1.65804 1.88980 2.17215 2.36891 3.09609 3.24922 3.42107 3.48599 3.53988 3.57649 3.80905 4.17756 4.19039 4.30457 4.32344 4.37312 4.40953 4.59759 4.67670 4.73900 4.81509 4.84895 4.87716 4.94606 5.13380 5.15917 5.22923 5.28352 5.34558 5.42699 5.61649 5.95833 6.00946 6.09281 6.09607 6.31294 6.47696 6.67633 6.87565 6.91657 7.38628 8.86554 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.003080 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.196604 B = 9087.773151 C = 9829.612502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.313 6.313 3 C 0.172 3.828 4 C -0.174 4.174 5 C -0.015 4.015 6 C -0.085 4.085 7 N 0.038 4.962 8 O -0.229 6.229 9 O -0.141 6.141 10 C -0.045 4.045 11 C 0.106 3.894 12 N -0.649 5.649 13 C 0.519 3.481 14 O -0.548 6.548 15 C 0.073 3.927 16 H 0.073 0.927 17 C -0.126 4.126 18 N -0.676 5.676 19 C 0.216 3.784 20 H 0.019 0.981 21 C -0.117 4.117 22 C -0.562 4.562 23 H 0.041 0.959 24 C 0.026 3.974 25 N -0.906 5.906 26 Si 0.949 3.051 27 H -0.278 1.278 28 H -0.279 1.279 29 H -0.274 1.274 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.204 0.796 34 H 0.185 0.815 35 H 0.145 0.855 36 H 0.433 0.567 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.335 0.665 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.029 0.971 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.424 7.544 13.057 27.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.224 6.224 3 C 0.122 3.878 4 C -0.193 4.193 5 C -0.034 4.034 6 C -0.170 4.170 7 N 0.551 4.449 8 O -0.428 6.428 9 O -0.366 6.366 10 C -0.067 4.067 11 C 0.009 3.991 12 N -0.297 5.297 13 C 0.308 3.692 14 O -0.424 6.424 15 C -0.040 4.040 16 H 0.090 0.910 17 C -0.184 4.184 18 N -0.309 5.309 19 C 0.107 3.893 20 H 0.037 0.963 21 C -0.176 4.176 22 C -0.601 4.601 23 H 0.059 0.941 24 C -0.174 4.174 25 N -0.545 5.545 26 Si 0.775 3.225 27 H -0.203 1.203 28 H -0.205 1.205 29 H -0.199 1.199 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.221 0.779 34 H 0.203 0.797 35 H 0.162 0.838 36 H 0.273 0.727 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.154 0.846 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.710 7.021 13.152 26.336 hybrid contribution -0.392 -0.060 -1.748 1.792 sum -22.102 6.961 11.404 25.826 Atomic orbital electron populations 1.23694 0.74299 1.06841 1.03793 1.86153 1.25202 1.24660 1.86405 1.19172 0.89552 0.87083 0.92000 1.21511 1.02954 0.88276 1.06564 1.21196 0.89640 1.01505 0.91076 1.20904 0.94110 0.81285 1.20679 1.43775 1.00957 1.03504 0.96694 1.94616 0.96697 1.94313 1.57211 1.94432 1.64809 1.25542 1.51776 1.20767 1.02204 0.89327 0.94389 1.16808 0.88147 0.86322 1.07789 1.43185 1.20193 1.13840 1.52439 1.21348 0.80643 0.91135 0.76048 1.90685 1.68533 1.36725 1.46432 1.21520 0.91521 0.92178 0.98812 0.90980 1.21751 1.02728 1.01923 0.92004 1.61001 1.29271 1.09068 1.31520 1.19033 0.92798 0.86740 0.90692 0.96291 1.21554 0.97352 1.00209 0.98478 1.22095 1.29003 1.06139 1.02879 0.94060 1.25586 0.95350 0.95191 1.01323 1.69978 1.36575 1.10122 1.37821 0.85660 0.78512 0.77836 0.80513 1.20299 1.20499 1.19889 0.89413 0.90500 0.85889 0.77941 0.79746 0.83751 0.72705 0.92124 0.89176 0.91811 0.84621 0.91839 0.96098 0.95209 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.81 113.37 1.11 1.13 16 2 O -0.31 -3.88 10.05 -93.31 -0.94 -4.81 16 3 C 0.17 2.69 6.70 22.60 0.15 2.84 16 4 C -0.17 -1.74 9.04 22.35 0.20 -1.54 16 5 C -0.01 -0.21 9.55 22.28 0.21 0.00 16 6 C -0.09 -2.11 6.85 36.38 0.25 -1.86 16 7 N 0.04 1.14 4.45 -46.46 -0.21 0.93 16 8 O -0.23 -8.28 18.44 18.88 0.35 -7.93 16 9 O -0.14 -3.92 18.44 18.89 0.35 -3.58 16 10 C -0.05 -1.27 8.20 22.38 0.18 -1.09 16 11 C 0.11 2.47 6.33 38.19 0.24 2.71 16 12 N -0.65 -15.75 5.09 -303.14 -1.54 -17.29 16 13 C 0.52 17.31 7.03 87.66 0.62 17.93 16 14 O -0.55 -22.51 12.98 -3.08 -0.04 -22.55 16 15 C 0.07 2.57 2.83 44.17 0.12 2.70 16 16 H 0.07 2.67 7.72 -2.38 -0.02 2.65 16 17 C -0.13 -3.47 9.39 71.98 0.68 -2.79 16 18 N -0.68 -29.77 5.99 -477.15 -2.86 -32.63 16 19 C 0.22 10.82 2.39 44.17 0.11 10.92 16 20 H 0.02 1.01 7.47 -2.39 -0.02 0.99 16 21 C -0.12 -5.89 9.36 71.98 0.67 -5.21 16 22 C -0.56 -30.78 8.50 25.60 0.22 -30.56 16 23 H 0.04 2.32 7.67 -2.91 -0.02 2.30 16 24 C 0.03 1.43 5.29 84.66 0.45 1.88 16 25 N -0.91 -50.68 11.29 21.45 0.24 -50.44 16 26 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 30 H 0.09 -0.13 7.67 -2.39 -0.02 -0.15 16 31 H 0.08 0.07 7.65 -2.39 -0.02 0.05 16 32 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.20 0.10 6.30 -2.91 -0.02 0.08 16 34 H 0.19 1.68 7.60 -2.91 -0.02 1.66 16 35 H 0.14 5.08 5.74 -2.91 -0.02 5.06 16 36 H 0.43 7.68 7.80 -92.71 -0.72 6.96 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.69 7.34 -2.38 -0.02 1.67 16 39 H 0.06 1.88 7.87 -2.39 -0.02 1.86 16 40 H 0.33 16.09 6.88 -89.69 -0.62 15.48 16 41 H 0.06 3.44 5.96 -2.38 -0.01 3.43 16 42 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -74.04 373.42 2.32 -71.72 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.27 Total: 24.22 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.21 Total: -2.94 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -4.37 Total: -99.43 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.28 Total: -38.87 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -74.04 2.32 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654900377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.883 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds