Wall clock time and date at job start Tue Mar 31 2020 21:22:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08997 * 109.47333 * 2 1
4 4 C 1.52997 * 109.46812 * 239.99523 * 2 1 3
5 5 N 1.46900 * 109.46847 * 185.00133 * 4 2 1
6 6 C 1.46907 * 110.99953 * 180.02562 * 5 4 2
7 7 C 1.50702 * 109.47036 * 180.02562 * 6 5 4
8 8 O 1.21285 * 120.00101 * 0.02562 * 7 6 5
9 9 N 1.34770 * 119.99785 * 180.02562 * 7 6 5
10 10 C 1.37095 * 120.00138 * 180.02562 * 9 7 6
11 11 H 1.08001 * 119.99839 * 359.97438 * 10 9 7
12 12 C 1.38950 * 120.00318 * 179.97438 * 10 9 7
13 13 N 1.31414 * 119.99904 * 359.97438 * 12 10 9
14 14 Si 1.86801 * 120.00190 * 180.02562 * 12 10 9
15 15 H 1.48499 * 109.47113 * 359.97438 * 14 12 10
16 16 H 1.48497 * 109.47463 * 119.99929 * 14 12 10
17 17 H 1.48500 * 109.47085 * 240.00092 * 14 12 10
18 18 N 1.46503 * 109.46625 * 119.99907 * 2 1 3
19 19 C 1.34770 * 120.00380 * 274.99646 * 18 2 1
20 20 O 1.21281 * 120.00135 * 354.99736 * 19 18 2
21 21 C 1.50697 * 120.00269 * 174.99690 * 19 18 2
22 22 C 1.52993 * 115.55339 * 303.87768 * 21 19 18
23 23 F 1.39902 * 109.47358 * 65.55218 * 22 21 19
24 24 F 1.39900 * 109.47629 * 185.55945 * 22 21 19
25 25 F 1.39905 * 109.46844 * 305.55330 * 22 21 19
26 26 C 1.53007 * 117.49790 * 158.20241 * 21 19 18
27 27 C 1.53003 * 117.49833 * 89.54267 * 21 19 18
28 28 H 1.08998 * 109.47078 * 59.99539 * 1 2 3
29 29 H 1.08997 * 109.47333 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47011 * 300.00264 * 1 2 3
31 31 H 1.08998 * 109.47039 * 65.00526 * 4 2 1
32 32 H 1.08997 * 109.47334 * 305.00359 * 4 2 1
33 33 H 1.00902 * 111.00348 * 303.95765 * 5 4 2
34 34 H 1.09001 * 109.47221 * 300.00415 * 6 5 4
35 35 H 1.08996 * 109.46568 * 60.00446 * 6 5 4
36 36 H 0.97003 * 120.00235 * 0.02562 * 9 7 6
37 37 H 0.96999 * 119.99929 * 179.97438 * 13 12 10
38 38 H 0.97002 * 119.99531 * 94.99982 * 18 2 1
39 39 H 1.08994 * 117.50166 * 359.97438 * 26 21 19
40 40 H 1.09000 * 117.49259 * 145.02658 * 26 21 19
41 41 H 1.09000 * 117.50086 * 214.98127 * 27 21 19
42 42 H 1.08997 * 117.49861 * 359.97438 * 27 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7214 -1.2492
5 7 3.5040 -0.8268 -1.1903
6 6 4.0303 -1.5151 -2.3766
7 6 5.5316 -1.6047 -2.2806
8 8 6.1065 -1.1413 -1.3184
9 7 6.2354 -2.1998 -3.2639
10 6 7.6011 -2.2818 -3.1763
11 1 8.1130 -1.8692 -2.3195
12 6 8.3267 -2.8959 -4.1898
13 7 7.7038 -3.3984 -5.2321
14 14 10.1874 -3.0082 -4.0702
15 1 10.6416 -2.3717 -2.8077
16 1 10.5990 -4.4350 -4.0816
17 1 10.8011 -2.3068 -5.2263
18 7 2.0183 -0.6906 1.1962
19 6 2.1470 -0.0184 2.3572
20 8 1.9461 1.1772 2.3911
21 6 2.5407 -0.7521 3.6132
22 6 1.6391 -1.9253 4.0022
23 9 1.7382 -2.9306 3.0343
24 9 2.0412 -2.4312 5.2430
25 9 0.3131 -1.4869 4.0850
26 6 3.1602 0.0687 4.7461
27 6 4.0345 -0.8775 3.9193
28 1 -0.3633 0.5139 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.7516 -0.1584 -2.1369
32 1 1.6053 -1.7199 -1.2951
33 1 3.9280 0.0824 -1.0823
34 1 3.6095 -2.5191 -2.4308
35 1 3.7558 -0.9572 -3.2719
36 1 5.7757 -2.5701 -4.0336
37 1 8.2103 -3.8267 -5.9398
38 1 2.2489 -1.6318 1.1526
39 1 3.2834 1.1393 4.5829
40 1 2.9257 -0.2275 5.7686
41 1 4.3748 -1.7956 4.3982
42 1 4.7325 -0.4297 3.2120
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001669403811.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:22:46
Heat of formation + Delta-G solvation = -201.000573 kcal
Electronic energy + Delta-G solvation = -29832.119576 eV
Core-core repulsion = 25011.948490 eV
Total energy + Delta-G solvation = -4820.171086 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 337.140 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-50.42127 -47.96125 -47.87949 -40.34087 -38.40144 -37.43726 -36.30712 -34.36242
-33.70238 -31.32428 -31.08854 -27.65354 -27.55755 -25.13065 -24.12841 -23.16140
-22.96335 -21.14879 -20.54333 -19.29802 -18.95304 -18.63252 -18.43435 -17.91978
-16.79884 -16.44139 -15.90281 -15.35212 -15.08971 -14.95090 -14.75008 -14.60939
-14.48977 -14.43680 -14.32026 -14.14092 -14.04224 -13.98426 -13.82211 -13.51948
-13.27170 -12.76670 -12.62775 -12.45215 -12.06206 -11.96458 -11.84211 -11.58417
-11.51862 -11.22187 -11.16105 -11.08204 -10.98307 -10.36795 -10.25489 -10.13678
-9.55045 -9.19688 -8.52453 -8.14992 -7.99439 -6.44888 -3.85753 1.99779
2.47653 2.72342 3.03273 3.14117 3.25012 3.31998 3.41888 3.68852
3.87043 3.98498 4.00195 4.21108 4.29913 4.39771 4.49682 4.71523
5.00342 5.06154 5.11704 5.19374 5.22265 5.24429 5.40420 5.48873
5.51454 5.54089 5.68250 5.74059 5.82901 5.91736 5.99399 6.21548
6.34798 7.08932 7.35472 7.52431 7.54482 7.99829 8.03139 8.57691
9.14839 9.50946 10.02023 10.72877
Molecular weight = 337.14amu
Principal moments of inertia in cm(-1)
A = 0.014857 B = 0.002604 C = 0.002401
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1884.207085 B =10751.918375 C =11659.684807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.144 3.856
3 H 0.090 0.910
4 C 0.047 3.953
5 N -0.667 5.667
6 C 0.050 3.950
7 C 0.440 3.560
8 O -0.583 6.583
9 N -0.563 5.563
10 C -0.299 4.299
11 H 0.103 0.897
12 C 0.022 3.978
13 N -0.901 5.901
14 Si 0.929 3.071
15 H -0.268 1.268
16 H -0.281 1.281
17 H -0.282 1.282
18 N -0.697 5.697
19 C 0.562 3.438
20 O -0.527 6.527
21 C -0.245 4.245
22 C 0.498 3.502
23 F -0.173 7.173
24 F -0.175 7.175
25 F -0.175 7.175
26 C -0.117 4.117
27 C -0.122 4.122
28 H 0.068 0.932
29 H 0.060 0.940
30 H 0.062 0.938
31 H 0.046 0.954
32 H 0.079 0.921
33 H 0.351 0.649
34 H 0.086 0.914
35 H 0.044 0.956
36 H 0.392 0.608
37 H 0.271 0.729
38 H 0.410 0.590
39 H 0.124 0.876
40 H 0.116 0.884
41 H 0.118 0.882
42 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.337 3.092 14.339 21.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.039 3.961
3 H 0.108 0.892
4 C -0.083 4.083
5 N -0.300 5.300
6 C -0.082 4.082
7 C 0.226 3.774
8 O -0.467 6.467
9 N -0.200 5.200
10 C -0.429 4.429
11 H 0.121 0.879
12 C -0.179 4.179
13 N -0.543 5.543
14 Si 0.756 3.244
15 H -0.192 1.192
16 H -0.207 1.207
17 H -0.208 1.208
18 N -0.348 5.348
19 C 0.346 3.654
20 O -0.403 6.403
21 C -0.250 4.250
22 C 0.444 3.556
23 F -0.154 7.154
24 F -0.157 7.157
25 F -0.156 7.156
26 C -0.154 4.154
27 C -0.159 4.159
28 H 0.087 0.913
29 H 0.079 0.921
30 H 0.081 0.919
31 H 0.064 0.936
32 H 0.097 0.903
33 H 0.170 0.830
34 H 0.104 0.896
35 H 0.062 0.938
36 H 0.225 0.775
37 H 0.081 0.919
38 H 0.246 0.754
39 H 0.142 0.858
40 H 0.134 0.866
41 H 0.136 0.864
42 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -15.058 3.560 15.203 21.692
hybrid contribution 0.375 -0.509 -1.319 1.463
sum -14.683 3.051 13.883 20.436
Atomic orbital electron populations
1.22156 0.94690 1.02515 1.02763 1.21037 0.93754 0.97613 0.83670
0.89189 1.22315 0.89626 1.00825 0.95501 1.60070 1.02963 1.26865
1.40059 1.21684 0.95362 0.99888 0.91305 1.19782 0.87971 0.84623
0.85049 1.90521 1.71106 1.51923 1.33160 1.41869 1.07437 1.50947
1.19744 1.19748 0.81496 1.35132 1.06488 0.87872 1.25266 1.00717
0.96740 0.95223 1.69619 1.36636 1.38648 1.09380 0.85803 0.82202
0.77939 0.78422 1.19204 1.20716 1.20768 1.45818 1.65609 1.14854
1.08492 1.18596 0.77080 0.86801 0.82943 1.90711 1.50140 1.13999
1.85482 1.22613 0.99811 1.00983 1.01578 1.19081 0.79200 0.82634
0.74709 1.93208 1.95999 1.63053 1.63183 1.93181 1.90444 1.88471
1.43567 1.93219 1.36998 1.89387 1.95998 1.23217 0.98308 0.99694
0.94174 1.23306 0.87535 1.02878 1.02198 0.91262 0.92103 0.91913
0.93618 0.90308 0.82987 0.89553 0.93787 0.77476 0.91903 0.75371
0.85806 0.86624 0.86399 0.85735
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.49 9.48 37.16 0.35 -1.13 16
2 C 0.14 1.57 2.86 -67.93 -0.19 1.37 16
3 H 0.09 1.11 7.51 -51.93 -0.39 0.72 16
4 C 0.05 0.52 5.24 -3.83 -0.02 0.50 16
5 N -0.67 -9.85 5.85 -115.06 -0.67 -10.53 16
6 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16
7 C 0.44 10.04 7.82 -10.99 -0.09 9.96 16
8 O -0.58 -15.33 15.78 5.55 0.09 -15.25 16
9 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16
10 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16
11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16
12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
13 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16
14 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16
15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16
17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
18 N -0.70 -8.18 4.69 -53.81 -0.25 -8.43 16
19 C 0.56 7.20 6.93 -10.99 -0.08 7.13 16
20 O -0.53 -8.15 16.12 5.56 0.09 -8.06 16
21 C -0.25 -2.58 2.07 -155.66 -0.32 -2.90 16
22 C 0.50 5.21 3.06 37.15 0.11 5.32 16
23 F -0.17 -1.88 15.95 2.25 0.04 -1.84 16
24 F -0.18 -1.72 15.90 2.25 0.04 -1.69 16
25 F -0.17 -1.98 17.12 2.25 0.04 -1.94 16
26 C -0.12 -1.00 9.47 -26.69 -0.25 -1.26 16
27 C -0.12 -1.10 9.70 -26.69 -0.26 -1.36 16
28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.35 5.63 8.43 -39.29 -0.33 5.30 16
34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16
35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16
37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16
38 H 0.41 4.72 7.32 -40.82 -0.30 4.42 16
39 H 0.12 1.11 7.84 -51.93 -0.41 0.71 16
40 H 0.12 0.79 7.62 -51.93 -0.40 0.39 16
41 H 0.12 0.90 7.95 -51.93 -0.41 0.49 16
42 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16
LS Contribution 373.75 15.07 5.63 5.63
Total: -1.00 -31.78 373.75 -5.83 -37.60
By element:
Atomic # 1 Polarization: 21.14 SS G_CDS: -5.45 Total: 15.69 kcal
Atomic # 6 Polarization: 11.56 SS G_CDS: -1.01 Total: 10.55 kcal
Atomic # 7 Polarization: -56.21 SS G_CDS: -0.26 Total: -56.47 kcal
Atomic # 8 Polarization: -23.48 SS G_CDS: 0.18 Total: -23.31 kcal
Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.47 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -31.78 -5.83 -37.60 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001669403811.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -163.396 kcal
(2) G-P(sol) polarization free energy of solvation -31.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) -201.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds