Wall clock time and date at job start Tue Mar 31 2020 21:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47333 * 2 1 4 4 C 1.52997 * 109.46812 * 239.99523 * 2 1 3 5 5 N 1.46900 * 109.46847 * 185.00133 * 4 2 1 6 6 C 1.46907 * 110.99953 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47036 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99785 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00138 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99839 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00318 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99904 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00190 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47113 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47463 * 119.99929 * 14 12 10 17 17 H 1.48500 * 109.47085 * 240.00092 * 14 12 10 18 18 N 1.46503 * 109.46625 * 119.99907 * 2 1 3 19 19 C 1.34770 * 120.00380 * 274.99646 * 18 2 1 20 20 O 1.21281 * 120.00135 * 354.99736 * 19 18 2 21 21 C 1.50697 * 120.00269 * 174.99690 * 19 18 2 22 22 C 1.52993 * 115.55339 * 303.87768 * 21 19 18 23 23 F 1.39902 * 109.47358 * 65.55218 * 22 21 19 24 24 F 1.39900 * 109.47629 * 185.55945 * 22 21 19 25 25 F 1.39905 * 109.46844 * 305.55330 * 22 21 19 26 26 C 1.53007 * 117.49790 * 158.20241 * 21 19 18 27 27 C 1.53003 * 117.49833 * 89.54267 * 21 19 18 28 28 H 1.08998 * 109.47078 * 59.99539 * 1 2 3 29 29 H 1.08997 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47011 * 300.00264 * 1 2 3 31 31 H 1.08998 * 109.47039 * 65.00526 * 4 2 1 32 32 H 1.08997 * 109.47334 * 305.00359 * 4 2 1 33 33 H 1.00902 * 111.00348 * 303.95765 * 5 4 2 34 34 H 1.09001 * 109.47221 * 300.00415 * 6 5 4 35 35 H 1.08996 * 109.46568 * 60.00446 * 6 5 4 36 36 H 0.97003 * 120.00235 * 0.02562 * 9 7 6 37 37 H 0.96999 * 119.99929 * 179.97438 * 13 12 10 38 38 H 0.97002 * 119.99531 * 94.99982 * 18 2 1 39 39 H 1.08994 * 117.50166 * 359.97438 * 26 21 19 40 40 H 1.09000 * 117.49259 * 145.02658 * 26 21 19 41 41 H 1.09000 * 117.50086 * 214.98127 * 27 21 19 42 42 H 1.08997 * 117.49861 * 359.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1903 6 6 4.0303 -1.5151 -2.3766 7 6 5.5316 -1.6047 -2.2806 8 8 6.1065 -1.1413 -1.3184 9 7 6.2354 -2.1998 -3.2639 10 6 7.6011 -2.2818 -3.1763 11 1 8.1130 -1.8692 -2.3195 12 6 8.3267 -2.8959 -4.1898 13 7 7.7038 -3.3984 -5.2321 14 14 10.1874 -3.0082 -4.0702 15 1 10.6416 -2.3717 -2.8077 16 1 10.5990 -4.4350 -4.0816 17 1 10.8011 -2.3068 -5.2263 18 7 2.0183 -0.6906 1.1962 19 6 2.1470 -0.0184 2.3572 20 8 1.9461 1.1772 2.3911 21 6 2.5407 -0.7521 3.6132 22 6 1.6391 -1.9253 4.0022 23 9 1.7382 -2.9306 3.0343 24 9 2.0412 -2.4312 5.2430 25 9 0.3131 -1.4869 4.0850 26 6 3.1602 0.0687 4.7461 27 6 4.0345 -0.8775 3.9193 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7199 -1.2951 33 1 3.9280 0.0824 -1.0823 34 1 3.6095 -2.5191 -2.4308 35 1 3.7558 -0.9572 -3.2719 36 1 5.7757 -2.5701 -4.0336 37 1 8.2103 -3.8267 -5.9398 38 1 2.2489 -1.6318 1.1526 39 1 3.2834 1.1393 4.5829 40 1 2.9257 -0.2275 5.7686 41 1 4.3748 -1.7956 4.3982 42 1 4.7325 -0.4297 3.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669403811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:46 Heat of formation + Delta-G solvation = -201.000573 kcal Electronic energy + Delta-G solvation = -29832.119576 eV Core-core repulsion = 25011.948490 eV Total energy + Delta-G solvation = -4820.171086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.42127 -47.96125 -47.87949 -40.34087 -38.40144 -37.43726 -36.30712 -34.36242 -33.70238 -31.32428 -31.08854 -27.65354 -27.55755 -25.13065 -24.12841 -23.16140 -22.96335 -21.14879 -20.54333 -19.29802 -18.95304 -18.63252 -18.43435 -17.91978 -16.79884 -16.44139 -15.90281 -15.35212 -15.08971 -14.95090 -14.75008 -14.60939 -14.48977 -14.43680 -14.32026 -14.14092 -14.04224 -13.98426 -13.82211 -13.51948 -13.27170 -12.76670 -12.62775 -12.45215 -12.06206 -11.96458 -11.84211 -11.58417 -11.51862 -11.22187 -11.16105 -11.08204 -10.98307 -10.36795 -10.25489 -10.13678 -9.55045 -9.19688 -8.52453 -8.14992 -7.99439 -6.44888 -3.85753 1.99779 2.47653 2.72342 3.03273 3.14117 3.25012 3.31998 3.41888 3.68852 3.87043 3.98498 4.00195 4.21108 4.29913 4.39771 4.49682 4.71523 5.00342 5.06154 5.11704 5.19374 5.22265 5.24429 5.40420 5.48873 5.51454 5.54089 5.68250 5.74059 5.82901 5.91736 5.99399 6.21548 6.34798 7.08932 7.35472 7.52431 7.54482 7.99829 8.03139 8.57691 9.14839 9.50946 10.02023 10.72877 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.002604 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.207085 B =10751.918375 C =11659.684807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.090 0.910 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.697 5.697 19 C 0.562 3.438 20 O -0.527 6.527 21 C -0.245 4.245 22 C 0.498 3.502 23 F -0.173 7.173 24 F -0.175 7.175 25 F -0.175 7.175 26 C -0.117 4.117 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.351 0.649 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.410 0.590 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 3.092 14.339 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.348 5.348 19 C 0.346 3.654 20 O -0.403 6.403 21 C -0.250 4.250 22 C 0.444 3.556 23 F -0.154 7.154 24 F -0.157 7.157 25 F -0.156 7.156 26 C -0.154 4.154 27 C -0.159 4.159 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.246 0.754 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.058 3.560 15.203 21.692 hybrid contribution 0.375 -0.509 -1.319 1.463 sum -14.683 3.051 13.883 20.436 Atomic orbital electron populations 1.22156 0.94690 1.02515 1.02763 1.21037 0.93754 0.97613 0.83670 0.89189 1.22315 0.89626 1.00825 0.95501 1.60070 1.02963 1.26865 1.40059 1.21684 0.95362 0.99888 0.91305 1.19782 0.87971 0.84623 0.85049 1.90521 1.71106 1.51923 1.33160 1.41869 1.07437 1.50947 1.19744 1.19748 0.81496 1.35132 1.06488 0.87872 1.25266 1.00717 0.96740 0.95223 1.69619 1.36636 1.38648 1.09380 0.85803 0.82202 0.77939 0.78422 1.19204 1.20716 1.20768 1.45818 1.65609 1.14854 1.08492 1.18596 0.77080 0.86801 0.82943 1.90711 1.50140 1.13999 1.85482 1.22613 0.99811 1.00983 1.01578 1.19081 0.79200 0.82634 0.74709 1.93208 1.95999 1.63053 1.63183 1.93181 1.90444 1.88471 1.43567 1.93219 1.36998 1.89387 1.95998 1.23217 0.98308 0.99694 0.94174 1.23306 0.87535 1.02878 1.02198 0.91262 0.92103 0.91913 0.93618 0.90308 0.82987 0.89553 0.93787 0.77476 0.91903 0.75371 0.85806 0.86624 0.86399 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.13 16 2 C 0.14 1.57 2.86 -67.93 -0.19 1.37 16 3 H 0.09 1.11 7.51 -51.93 -0.39 0.72 16 4 C 0.05 0.52 5.24 -3.83 -0.02 0.50 16 5 N -0.67 -9.85 5.85 -115.06 -0.67 -10.53 16 6 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 7 C 0.44 10.04 7.82 -10.99 -0.09 9.96 16 8 O -0.58 -15.33 15.78 5.55 0.09 -15.25 16 9 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 14 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 N -0.70 -8.18 4.69 -53.81 -0.25 -8.43 16 19 C 0.56 7.20 6.93 -10.99 -0.08 7.13 16 20 O -0.53 -8.15 16.12 5.56 0.09 -8.06 16 21 C -0.25 -2.58 2.07 -155.66 -0.32 -2.90 16 22 C 0.50 5.21 3.06 37.15 0.11 5.32 16 23 F -0.17 -1.88 15.95 2.25 0.04 -1.84 16 24 F -0.18 -1.72 15.90 2.25 0.04 -1.69 16 25 F -0.17 -1.98 17.12 2.25 0.04 -1.94 16 26 C -0.12 -1.00 9.47 -26.69 -0.25 -1.26 16 27 C -0.12 -1.10 9.70 -26.69 -0.26 -1.36 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.35 5.63 8.43 -39.29 -0.33 5.30 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.41 4.72 7.32 -40.82 -0.30 4.42 16 39 H 0.12 1.11 7.84 -51.93 -0.41 0.71 16 40 H 0.12 0.79 7.62 -51.93 -0.40 0.39 16 41 H 0.12 0.90 7.95 -51.93 -0.41 0.49 16 42 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -31.78 373.75 -5.83 -37.60 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -5.45 Total: 15.69 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.01 Total: 10.55 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.26 Total: -56.47 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.18 Total: -23.31 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.78 -5.83 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669403811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.396 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds