Wall clock time and date at job start Tue Mar 31 2020 21:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47333 * 2 1 4 4 C 1.52997 * 109.46812 * 239.99523 * 2 1 3 5 5 N 1.46900 * 109.46847 * 185.00133 * 4 2 1 6 6 C 1.46907 * 110.99953 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47036 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00101 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99785 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00138 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99839 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00318 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99904 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00190 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47113 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47463 * 119.99929 * 14 12 10 17 17 H 1.48500 * 109.47085 * 240.00092 * 14 12 10 18 18 N 1.46503 * 109.46625 * 119.99907 * 2 1 3 19 19 C 1.34770 * 120.00380 * 274.99646 * 18 2 1 20 20 O 1.21281 * 120.00135 * 354.99736 * 19 18 2 21 21 C 1.50697 * 120.00269 * 174.99690 * 19 18 2 22 22 C 1.52993 * 115.55339 * 303.87768 * 21 19 18 23 23 F 1.39902 * 109.47358 * 65.55218 * 22 21 19 24 24 F 1.39900 * 109.47629 * 185.55945 * 22 21 19 25 25 F 1.39905 * 109.46844 * 305.55330 * 22 21 19 26 26 C 1.53007 * 117.49790 * 158.20241 * 21 19 18 27 27 C 1.53003 * 117.49833 * 89.54267 * 21 19 18 28 28 H 1.08998 * 109.47078 * 59.99539 * 1 2 3 29 29 H 1.08997 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47011 * 300.00264 * 1 2 3 31 31 H 1.08998 * 109.47039 * 65.00526 * 4 2 1 32 32 H 1.08997 * 109.47334 * 305.00359 * 4 2 1 33 33 H 1.00902 * 111.00348 * 303.95765 * 5 4 2 34 34 H 1.09001 * 109.47221 * 300.00415 * 6 5 4 35 35 H 1.08996 * 109.46568 * 60.00446 * 6 5 4 36 36 H 0.97003 * 120.00235 * 0.02562 * 9 7 6 37 37 H 0.96999 * 119.99929 * 179.97438 * 13 12 10 38 38 H 0.97002 * 119.99531 * 94.99982 * 18 2 1 39 39 H 1.08994 * 117.50166 * 359.97438 * 26 21 19 40 40 H 1.09000 * 117.49259 * 145.02658 * 26 21 19 41 41 H 1.09000 * 117.50086 * 214.98127 * 27 21 19 42 42 H 1.08997 * 117.49861 * 359.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1903 6 6 4.0303 -1.5151 -2.3766 7 6 5.5316 -1.6047 -2.2806 8 8 6.1065 -1.1413 -1.3184 9 7 6.2354 -2.1998 -3.2639 10 6 7.6011 -2.2818 -3.1763 11 1 8.1130 -1.8692 -2.3195 12 6 8.3267 -2.8959 -4.1898 13 7 7.7038 -3.3984 -5.2321 14 14 10.1874 -3.0082 -4.0702 15 1 10.6416 -2.3717 -2.8077 16 1 10.5990 -4.4350 -4.0816 17 1 10.8011 -2.3068 -5.2263 18 7 2.0183 -0.6906 1.1962 19 6 2.1470 -0.0184 2.3572 20 8 1.9461 1.1772 2.3911 21 6 2.5407 -0.7521 3.6132 22 6 1.6391 -1.9253 4.0022 23 9 1.7382 -2.9306 3.0343 24 9 2.0412 -2.4312 5.2430 25 9 0.3131 -1.4869 4.0850 26 6 3.1602 0.0687 4.7461 27 6 4.0345 -0.8775 3.9193 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7199 -1.2951 33 1 3.9280 0.0824 -1.0823 34 1 3.6095 -2.5191 -2.4308 35 1 3.7558 -0.9572 -3.2719 36 1 5.7757 -2.5701 -4.0336 37 1 8.2103 -3.8267 -5.9398 38 1 2.2489 -1.6318 1.1526 39 1 3.2834 1.1393 4.5829 40 1 2.9257 -0.2275 5.7686 41 1 4.3748 -1.7956 4.3982 42 1 4.7325 -0.4297 3.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669403811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:45 Heat of formation + Delta-G solvation = -224.455395 kcal Electronic energy + Delta-G solvation = -29833.136654 eV Core-core repulsion = 25011.948490 eV Total energy + Delta-G solvation = -4821.188164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.25480 -48.77773 -48.73467 -41.29223 -40.13465 -38.39523 -37.32514 -36.02960 -35.16865 -33.24882 -32.10483 -28.96931 -28.38162 -26.72049 -25.19658 -24.36618 -23.68311 -22.04878 -21.46544 -21.02843 -19.92546 -19.81075 -19.46857 -19.27778 -18.01981 -17.53547 -17.16883 -16.64117 -16.38348 -16.14930 -15.91172 -15.82346 -15.58875 -15.39509 -15.24890 -15.16905 -15.03324 -15.01862 -14.87844 -14.78449 -14.44297 -14.07201 -13.63407 -13.49229 -13.35120 -13.08494 -13.01513 -12.82347 -12.75099 -12.63503 -12.39506 -12.11427 -12.01917 -11.93648 -11.84174 -11.50285 -11.13830 -10.34923 -10.14115 -10.00096 -9.35387 -8.46214 -5.94481 1.09162 1.36999 1.42605 1.56314 1.61692 1.86926 2.07271 2.21294 2.29443 2.59986 2.84327 2.89603 3.19943 3.21650 3.40821 3.54211 3.61268 3.68936 3.80211 4.14080 4.30378 4.36299 4.40891 4.52297 4.54426 4.59413 4.63090 4.72996 4.74981 4.79315 4.97872 4.99434 5.23868 5.42007 5.43422 5.86547 6.08911 6.32073 6.39335 6.61245 7.03580 7.14034 7.58111 8.13369 8.71370 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.002604 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.207085 B =10751.918375 C =11659.684807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.073 0.927 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.272 1.272 18 N -0.694 5.694 19 C 0.557 3.443 20 O -0.561 6.561 21 C -0.259 4.259 22 C 0.503 3.497 23 F -0.176 7.176 24 F -0.169 7.169 25 F -0.181 7.181 26 C -0.105 4.105 27 C -0.116 4.116 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.341 0.659 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.412 0.588 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.015 2.358 14.179 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.091 0.909 4 C -0.075 4.075 5 N -0.311 5.311 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.197 1.197 18 N -0.344 5.344 19 C 0.342 3.658 20 O -0.440 6.440 21 C -0.264 4.264 22 C 0.449 3.551 23 F -0.157 7.157 24 F -0.150 7.150 25 F -0.162 7.162 26 C -0.142 4.142 27 C -0.153 4.153 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.159 0.841 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.771 2.800 15.018 21.957 hybrid contribution 0.541 -0.257 -1.248 1.384 sum -15.230 2.543 13.770 20.689 Atomic orbital electron populations 1.22083 0.92998 1.03263 1.02924 1.21098 0.94960 0.96643 0.83455 0.90931 1.22374 0.86982 1.02095 0.96091 1.60062 1.05228 1.26317 1.39448 1.21543 0.90369 1.01783 0.92969 1.20915 0.90625 0.82414 0.83537 1.90494 1.72818 1.53026 1.34520 1.41935 1.06827 1.51816 1.20548 1.19683 0.83130 1.36783 1.06543 0.90385 1.26008 1.04767 0.95879 0.94588 1.69673 1.38151 1.38652 1.09687 0.84898 0.77089 0.78287 0.78247 1.19795 1.19631 1.19721 1.45903 1.65038 1.14862 1.08626 1.18952 0.76511 0.86572 0.83792 1.90687 1.51777 1.15402 1.86106 1.22585 1.00683 1.01626 1.01480 1.18989 0.78847 0.82459 0.74827 1.93200 1.95985 1.63165 1.63356 1.93191 1.90350 1.88365 1.43142 1.93207 1.37495 1.89469 1.96038 1.23335 0.96944 0.99259 0.94695 1.23351 0.86359 1.03677 1.01945 0.89368 0.91003 0.93488 0.91587 0.88679 0.84090 0.87374 0.91430 0.76976 0.91348 0.75175 0.86421 0.84426 0.84698 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.48 71.98 0.68 -1.87 16 2 C 0.14 2.96 2.86 44.99 0.13 3.09 16 3 H 0.07 1.78 7.51 -2.39 -0.02 1.76 16 4 C 0.05 1.04 5.24 86.30 0.45 1.49 16 5 N -0.68 -19.13 5.85 -517.93 -3.03 -22.16 16 6 C 0.07 2.04 6.17 85.56 0.53 2.57 16 7 C 0.44 19.95 7.82 87.66 0.69 20.63 16 8 O -0.62 -33.36 15.78 -3.05 -0.05 -33.41 16 9 N -0.57 -28.61 5.29 -307.00 -1.62 -30.23 16 10 C -0.33 -18.54 9.68 84.04 0.81 -17.72 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 14 Si 0.99 42.41 29.55 68.60 2.03 44.43 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 18 N -0.69 -15.94 4.69 -442.54 -2.08 -18.01 16 19 C 0.56 14.31 6.93 87.66 0.61 14.91 16 20 O -0.56 -17.71 16.12 -3.03 -0.05 -17.76 16 21 C -0.26 -5.31 2.07 -52.93 -0.11 -5.42 16 22 C 0.50 10.00 3.06 71.98 0.22 10.22 16 23 F -0.18 -3.62 15.95 44.97 0.72 -2.90 16 24 F -0.17 -3.05 15.90 44.97 0.72 -2.33 16 25 F -0.18 -3.95 17.12 44.97 0.77 -3.18 16 26 C -0.11 -1.72 9.47 30.62 0.29 -1.43 16 27 C -0.12 -2.02 9.70 30.62 0.30 -1.72 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.34 10.82 8.43 -89.69 -0.76 10.06 16 34 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 37 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.41 9.13 7.32 -92.71 -0.68 8.45 16 39 H 0.12 2.09 7.84 -2.39 -0.02 2.08 16 40 H 0.14 1.61 7.62 -2.39 -0.02 1.59 16 41 H 0.13 1.86 7.95 -2.39 -0.02 1.84 16 42 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -69.27 373.75 1.68 -67.59 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -1.07 Total: 42.09 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 5.06 Total: 24.54 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -6.45 Total: -119.07 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.10 Total: -51.16 kcal Atomic # 9 Polarization: -10.62 SS G_CDS: 2.20 Total: -8.41 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.27 1.68 -67.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669403811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.869 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds