Wall clock time and date at job start Tue Mar 31 2020 20:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.06557 * 2 1 4 4 C 1.53991 * 109.91725 * 238.79410 * 2 1 3 5 5 H 1.09002 * 110.30970 * 358.34104 * 4 2 1 6 6 N 1.46491 * 110.39362 * 120.46818 * 4 2 1 7 7 C 1.34783 * 120.00059 * 202.22278 * 6 4 2 8 8 O 1.21272 * 119.99917 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00001 * 180.02562 * 7 6 4 10 10 C 1.53003 * 109.47101 * 179.97438 * 9 7 6 11 11 F 1.39895 * 109.46964 * 59.99813 * 10 9 7 12 12 F 1.39901 * 109.46832 * 179.97438 * 10 9 7 13 13 F 1.39901 * 109.46694 * 299.99560 * 10 9 7 14 14 C 1.54599 * 105.13869 * 239.42812 * 4 2 1 15 15 C 1.54931 * 102.92074 * 338.03870 * 14 4 2 16 16 N 1.47896 * 109.91258 * 121.20703 * 2 1 3 17 17 C 1.46901 * 111.00087 * 265.19605 * 16 2 1 18 18 C 1.50703 * 109.47411 * 176.70603 * 17 16 2 19 19 O 1.21290 * 119.99790 * 353.75661 * 18 17 16 20 20 N 1.34773 * 120.00042 * 173.75627 * 18 17 16 21 21 C 1.37098 * 120.00223 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99690 * 359.73030 * 21 20 18 23 23 C 1.38948 * 120.00112 * 179.72681 * 21 20 18 24 24 N 1.31412 * 120.00049 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99769 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47165 * 60.00349 * 25 23 21 27 27 H 1.48510 * 109.47057 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47307 * 299.99723 * 25 23 21 29 29 H 1.08998 * 109.47547 * 300.25367 * 1 2 3 30 30 H 1.09006 * 109.46608 * 60.24768 * 1 2 3 31 31 H 1.09001 * 109.47535 * 180.24593 * 1 2 3 32 32 H 0.97000 * 120.00621 * 22.21648 * 6 4 2 33 33 H 1.09012 * 109.47041 * 299.99377 * 9 7 6 34 34 H 1.08995 * 109.47885 * 59.99323 * 9 7 6 35 35 H 1.09004 * 110.72157 * 219.68406 * 14 4 2 36 36 H 1.09002 * 110.88009 * 96.47448 * 14 4 2 37 37 H 1.08998 * 110.67042 * 278.98193 * 15 14 4 38 38 H 1.09002 * 110.81276 * 155.91887 * 15 14 4 39 39 H 1.08997 * 109.47019 * 56.70255 * 17 16 2 40 40 H 1.09004 * 109.46820 * 296.70749 * 17 16 2 41 41 H 0.97011 * 120.00062 * 359.72761 * 20 18 17 42 42 H 0.96999 * 119.99752 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 1.2228 -1.1401 -1.8250 6 7 2.8831 0.1363 -2.0591 7 6 3.0720 -0.1362 -3.3655 8 8 2.5565 -1.1155 -3.8614 9 6 3.9248 0.7754 -4.2098 10 6 3.9761 0.2430 -5.6432 11 9 2.6809 0.1959 -6.1698 12 9 4.7673 1.0896 -6.4271 13 9 4.5267 -1.0431 -5.6435 14 6 2.9058 -1.9118 -0.6761 15 6 3.2680 -1.4186 0.7472 16 7 2.0337 -0.7205 1.1893 17 6 2.3210 0.2122 2.2873 18 6 2.7538 -0.5632 3.5049 19 8 2.7086 -1.7753 3.4997 20 7 3.1910 0.0901 4.5996 21 6 3.5842 -0.6153 5.7075 22 1 3.5395 -1.6943 5.7046 23 6 4.0403 0.0581 6.8341 24 7 4.0944 1.3711 6.8379 25 14 4.5767 -0.9031 8.3433 26 1 5.7019 -1.8028 7.9831 27 1 5.0181 0.0416 9.4008 28 1 3.4373 -1.7121 8.8458 29 1 -0.3634 0.5177 0.8877 30 1 -0.3633 0.5100 -0.8923 31 1 -0.3634 -1.0276 0.0044 32 1 3.2957 0.9195 -1.6626 33 1 3.4960 1.7777 -4.2092 34 1 4.9340 0.8119 -3.7998 35 1 3.8052 -2.0559 -1.2749 36 1 2.3240 -2.8323 -0.6290 37 1 4.1097 -0.7269 0.7121 38 1 3.4903 -2.2599 1.4037 39 1 1.4239 0.7852 2.5214 40 1 3.1184 0.8921 1.9872 41 1 3.2309 1.0594 4.6024 42 1 4.4131 1.8411 7.6242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689279224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:09 Heat of formation + Delta-G solvation = -219.018928 kcal Electronic energy + Delta-G solvation = -29476.173856 eV Core-core repulsion = 24655.221435 eV Total energy + Delta-G solvation = -4820.952421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.38999 -47.93416 -47.80137 -40.56144 -39.09406 -37.69410 -34.65304 -33.88523 -32.53513 -31.38991 -31.28223 -30.69070 -26.63121 -25.63836 -24.20051 -24.11793 -21.81777 -20.63957 -20.43429 -19.23892 -19.00125 -18.86415 -18.02014 -17.84787 -17.02313 -16.60398 -15.95621 -15.81450 -15.14338 -14.94536 -14.81286 -14.60362 -14.57476 -14.32521 -14.23060 -13.98574 -13.97362 -13.92274 -13.79910 -13.53732 -13.11124 -13.03078 -12.54084 -12.40308 -12.26824 -11.98770 -11.76432 -11.52186 -11.40587 -11.30490 -11.15920 -10.87295 -10.80755 -10.47159 -10.40320 -10.24809 -9.52753 -9.40058 -8.53144 -8.09587 -7.98498 -6.45401 -3.86218 2.07053 2.13337 2.67955 3.17401 3.23391 3.27666 3.32023 3.64787 3.70737 3.86335 3.95189 4.19012 4.29085 4.38440 4.53918 4.59024 4.64583 4.87757 5.10732 5.19441 5.20427 5.30990 5.37732 5.56391 5.61701 5.72674 5.82483 5.85144 5.86731 6.05383 6.17944 6.22887 6.27734 6.41562 6.94685 7.07622 7.15890 7.51631 7.68062 8.02215 8.57844 9.14586 9.50270 10.02158 10.72306 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.002089 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.551343 B =13402.755335 C =13751.576843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.056 0.944 4 C 0.138 3.862 5 H 0.103 0.897 6 N -0.715 5.715 7 C 0.518 3.482 8 O -0.517 6.517 9 C -0.198 4.198 10 C 0.473 3.527 11 F -0.173 7.173 12 F -0.183 7.183 13 F -0.172 7.172 14 C -0.130 4.130 15 C 0.040 3.960 16 N -0.484 5.484 17 C 0.038 3.962 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.402 0.598 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.391 0.609 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 5.185 -21.848 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 H 0.074 0.926 4 C 0.033 3.967 5 H 0.121 0.879 6 N -0.367 5.367 7 C 0.302 3.698 8 O -0.392 6.392 9 C -0.239 4.239 10 C 0.418 3.582 11 F -0.155 7.155 12 F -0.165 7.165 13 F -0.154 7.154 14 C -0.170 4.170 15 C -0.087 4.087 16 N -0.209 5.209 17 C -0.094 4.094 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.236 0.764 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.224 0.776 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.455 3.400 -21.868 22.178 hybrid contribution 1.250 1.371 0.640 1.963 sum -0.205 4.771 -21.227 21.758 Atomic orbital electron populations 1.21719 0.92977 1.03017 1.01402 1.22657 0.97211 0.96003 0.89465 0.92623 1.21988 0.93616 0.90070 0.91015 0.87940 1.46065 1.52197 1.29511 1.08931 1.19737 0.81490 0.85834 0.82744 1.90844 1.48511 1.27747 1.72109 1.22994 1.06225 1.03299 0.91384 1.19685 0.74070 0.76070 0.88369 1.93228 1.37729 1.96210 1.88290 1.93206 1.74808 1.71067 1.77391 1.93237 1.85509 1.39734 1.96887 1.22913 0.99971 0.98225 0.95843 1.23312 0.90432 0.99704 0.95286 1.64505 1.27674 1.24737 1.03982 1.22074 1.00688 0.94143 0.92449 1.19663 0.84407 0.88508 0.84570 1.90516 1.58775 1.13707 1.82950 1.41860 1.56904 1.09268 1.12106 1.19642 1.39394 0.93248 0.90545 0.87967 1.25254 0.97555 0.95715 0.99388 1.69600 1.47230 1.06563 1.31028 0.85923 0.79195 0.78857 0.80286 1.19919 1.20984 1.19855 0.92008 0.92615 0.91391 0.76351 0.84304 0.84265 0.90914 0.89577 0.94475 0.87826 0.89206 0.93556 0.77557 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.32 37.16 0.35 -1.05 16 2 C 0.06 0.62 2.87 -66.65 -0.19 0.43 16 3 H 0.06 0.53 7.23 -51.93 -0.38 0.16 16 4 C 0.14 1.45 2.93 -66.58 -0.20 1.26 16 5 H 0.10 1.18 7.19 -51.93 -0.37 0.81 16 6 N -0.72 -5.69 5.08 -52.50 -0.27 -5.96 16 7 C 0.52 4.70 7.59 -10.98 -0.08 4.61 16 8 O -0.52 -6.94 14.53 5.56 0.08 -6.85 16 9 C -0.20 -1.06 5.75 -27.88 -0.16 -1.22 16 10 C 0.47 4.04 2.89 37.16 0.11 4.15 16 11 F -0.17 -1.83 16.40 2.25 0.04 -1.80 16 12 F -0.18 -1.47 17.32 2.25 0.04 -1.43 16 13 F -0.17 -1.88 16.40 2.25 0.04 -1.84 16 14 C -0.13 -1.60 6.78 -24.87 -0.17 -1.77 16 15 C 0.04 0.60 5.79 -1.90 -0.01 0.58 16 16 N -0.48 -7.34 4.62 -224.01 -1.03 -8.38 16 17 C 0.04 0.63 5.18 -4.97 -0.03 0.60 16 18 C 0.44 10.02 7.47 -10.99 -0.08 9.94 16 19 O -0.58 -15.05 14.39 5.55 0.08 -14.97 16 20 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 21 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.40 2.13 8.29 -40.82 -0.34 1.79 16 33 H 0.14 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.52 7.91 -51.93 -0.41 0.11 16 38 H 0.10 1.90 6.84 -51.93 -0.36 1.54 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.05 0.68 7.99 -51.93 -0.41 0.26 16 41 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -33.36 363.55 -6.09 -39.45 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.48 Total: 8.05 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -0.70 Total: 9.76 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.64 Total: -51.54 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.16 Total: -21.82 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.11 Total: -5.07 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.36 -6.09 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689279224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.569 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds