Wall clock time and date at job start Tue Mar 31 2020 20:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.06557 * 2 1 4 4 C 1.53991 * 109.91725 * 238.79410 * 2 1 3 5 5 H 1.09002 * 110.30970 * 358.34104 * 4 2 1 6 6 N 1.46491 * 110.39362 * 120.46818 * 4 2 1 7 7 C 1.34783 * 120.00059 * 202.22278 * 6 4 2 8 8 O 1.21272 * 119.99917 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00001 * 180.02562 * 7 6 4 10 10 C 1.53003 * 109.47101 * 179.97438 * 9 7 6 11 11 F 1.39895 * 109.46964 * 59.99813 * 10 9 7 12 12 F 1.39901 * 109.46832 * 179.97438 * 10 9 7 13 13 F 1.39901 * 109.46694 * 299.99560 * 10 9 7 14 14 C 1.54599 * 105.13869 * 239.42812 * 4 2 1 15 15 C 1.54931 * 102.92074 * 338.03870 * 14 4 2 16 16 N 1.47896 * 109.91258 * 121.20703 * 2 1 3 17 17 C 1.46901 * 111.00087 * 265.19605 * 16 2 1 18 18 C 1.50703 * 109.47411 * 176.70603 * 17 16 2 19 19 O 1.21290 * 119.99790 * 353.75661 * 18 17 16 20 20 N 1.34773 * 120.00042 * 173.75627 * 18 17 16 21 21 C 1.37098 * 120.00223 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99690 * 359.73030 * 21 20 18 23 23 C 1.38948 * 120.00112 * 179.72681 * 21 20 18 24 24 N 1.31412 * 120.00049 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99769 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47165 * 60.00349 * 25 23 21 27 27 H 1.48510 * 109.47057 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47307 * 299.99723 * 25 23 21 29 29 H 1.08998 * 109.47547 * 300.25367 * 1 2 3 30 30 H 1.09006 * 109.46608 * 60.24768 * 1 2 3 31 31 H 1.09001 * 109.47535 * 180.24593 * 1 2 3 32 32 H 0.97000 * 120.00621 * 22.21648 * 6 4 2 33 33 H 1.09012 * 109.47041 * 299.99377 * 9 7 6 34 34 H 1.08995 * 109.47885 * 59.99323 * 9 7 6 35 35 H 1.09004 * 110.72157 * 219.68406 * 14 4 2 36 36 H 1.09002 * 110.88009 * 96.47448 * 14 4 2 37 37 H 1.08998 * 110.67042 * 278.98193 * 15 14 4 38 38 H 1.09002 * 110.81276 * 155.91887 * 15 14 4 39 39 H 1.08997 * 109.47019 * 56.70255 * 17 16 2 40 40 H 1.09004 * 109.46820 * 296.70749 * 17 16 2 41 41 H 0.97011 * 120.00062 * 359.72761 * 20 18 17 42 42 H 0.96999 * 119.99752 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 1.2228 -1.1401 -1.8250 6 7 2.8831 0.1363 -2.0591 7 6 3.0720 -0.1362 -3.3655 8 8 2.5565 -1.1155 -3.8614 9 6 3.9248 0.7754 -4.2098 10 6 3.9761 0.2430 -5.6432 11 9 2.6809 0.1959 -6.1698 12 9 4.7673 1.0896 -6.4271 13 9 4.5267 -1.0431 -5.6435 14 6 2.9058 -1.9118 -0.6761 15 6 3.2680 -1.4186 0.7472 16 7 2.0337 -0.7205 1.1893 17 6 2.3210 0.2122 2.2873 18 6 2.7538 -0.5632 3.5049 19 8 2.7086 -1.7753 3.4997 20 7 3.1910 0.0901 4.5996 21 6 3.5842 -0.6153 5.7075 22 1 3.5395 -1.6943 5.7046 23 6 4.0403 0.0581 6.8341 24 7 4.0944 1.3711 6.8379 25 14 4.5767 -0.9031 8.3433 26 1 5.7019 -1.8028 7.9831 27 1 5.0181 0.0416 9.4008 28 1 3.4373 -1.7121 8.8458 29 1 -0.3634 0.5177 0.8877 30 1 -0.3633 0.5100 -0.8923 31 1 -0.3634 -1.0276 0.0044 32 1 3.2957 0.9195 -1.6626 33 1 3.4960 1.7777 -4.2092 34 1 4.9340 0.8119 -3.7998 35 1 3.8052 -2.0559 -1.2749 36 1 2.3240 -2.8323 -0.6290 37 1 4.1097 -0.7269 0.7121 38 1 3.4903 -2.2599 1.4037 39 1 1.4239 0.7852 2.5214 40 1 3.1184 0.8921 1.9872 41 1 3.2309 1.0594 4.6024 42 1 4.4131 1.8411 7.6242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689279224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:08 Heat of formation + Delta-G solvation = -244.834238 kcal Electronic energy + Delta-G solvation = -29477.293291 eV Core-core repulsion = 24655.221435 eV Total energy + Delta-G solvation = -4822.071857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.06023 -48.58607 -48.53269 -41.44119 -40.34093 -39.18372 -36.01938 -35.38669 -33.37450 -33.11981 -32.28622 -31.72677 -28.11566 -26.61909 -25.81554 -24.87043 -22.78302 -21.53967 -21.40123 -20.85486 -19.86421 -19.67706 -19.53303 -18.65885 -17.79403 -17.66855 -17.30291 -16.69268 -16.45509 -16.27070 -16.05332 -15.73691 -15.50982 -15.30349 -15.23698 -15.07405 -14.94230 -14.70858 -14.67987 -14.60284 -14.26157 -13.85015 -13.70238 -13.47494 -13.45257 -13.02706 -12.93641 -12.91959 -12.71791 -12.43566 -12.38418 -12.35367 -12.14630 -12.11637 -11.74771 -11.45765 -11.18265 -10.29823 -10.18358 -9.98662 -9.32116 -8.45384 -5.93298 1.39973 1.41774 1.42200 1.52122 1.53511 2.04569 2.08596 2.29480 2.74459 2.79491 3.08407 3.15066 3.21877 3.32691 3.47353 3.73109 3.75792 4.04451 4.18410 4.18771 4.27857 4.29817 4.34168 4.43439 4.46031 4.58188 4.75207 4.81919 4.91130 5.01057 5.05766 5.14876 5.35566 5.41567 5.44072 5.86516 5.98644 6.13016 6.35449 6.63144 7.06296 7.15405 7.59329 8.15895 8.71782 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.002089 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.551343 B =13402.755335 C =13751.576843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.085 0.915 4 C 0.148 3.852 5 H 0.094 0.906 6 N -0.701 5.701 7 C 0.516 3.484 8 O -0.566 6.566 9 C -0.184 4.184 10 C 0.464 3.536 11 F -0.189 7.189 12 F -0.180 7.180 13 F -0.191 7.191 14 C -0.123 4.123 15 C 0.044 3.956 16 N -0.508 5.508 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.419 0.581 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.396 0.604 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 7.574 -22.494 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 H 0.103 0.897 4 C 0.043 3.957 5 H 0.112 0.888 6 N -0.354 5.354 7 C 0.302 3.698 8 O -0.445 6.445 9 C -0.223 4.223 10 C 0.409 3.591 11 F -0.171 7.171 12 F -0.162 7.162 13 F -0.173 7.173 14 C -0.162 4.162 15 C -0.084 4.084 16 N -0.234 5.234 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.257 0.743 33 H 0.196 0.804 34 H 0.190 0.810 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.230 0.770 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.051 5.846 -22.519 23.289 hybrid contribution 1.106 0.589 0.768 1.470 sum 0.055 6.435 -21.750 22.682 Atomic orbital electron populations 1.21728 0.92457 1.02351 1.02455 1.22694 0.97478 0.96948 0.87565 0.89683 1.21693 0.93300 0.89757 0.90975 0.88752 1.45868 1.51568 1.29499 1.08488 1.20324 0.81005 0.85549 0.82933 1.90837 1.50556 1.30038 1.73035 1.23054 1.07556 1.03623 0.88107 1.20210 0.73296 0.75516 0.90034 1.93195 1.38886 1.96249 1.88758 1.93210 1.74621 1.70716 1.77611 1.93199 1.85732 1.41321 1.97048 1.22805 1.00338 0.98531 0.94528 1.23132 0.91018 0.98600 0.95628 1.64413 1.27845 1.25662 1.05439 1.21938 1.02326 0.93680 0.90043 1.20795 0.82366 0.88447 0.85585 1.90498 1.59856 1.15978 1.83903 1.41920 1.57694 1.09386 1.12250 1.19575 1.41483 0.92530 0.92459 0.90548 1.25966 0.97057 0.96677 1.01443 1.69652 1.47234 1.07332 1.31875 0.85049 0.78617 0.77819 0.77231 1.19816 1.19495 1.19894 0.92207 0.90260 0.93000 0.74270 0.80406 0.80956 0.90373 0.91008 0.93329 0.92272 0.87121 0.90654 0.76975 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.32 71.98 0.67 -1.78 16 2 C 0.06 1.19 2.87 45.06 0.13 1.32 16 3 H 0.09 1.21 7.23 -2.39 -0.02 1.19 16 4 C 0.15 2.83 2.93 45.87 0.13 2.97 16 5 H 0.09 2.05 7.19 -2.39 -0.02 2.03 16 6 N -0.70 -8.81 5.08 -438.39 -2.23 -11.04 16 7 C 0.52 7.99 7.59 87.65 0.67 8.66 16 8 O -0.57 -14.64 14.53 -3.01 -0.04 -14.68 16 9 C -0.18 -1.28 5.75 29.85 0.17 -1.11 16 10 C 0.46 7.08 2.89 71.98 0.21 7.28 16 11 F -0.19 -3.82 16.40 44.97 0.74 -3.08 16 12 F -0.18 -2.50 17.32 44.97 0.78 -1.72 16 13 F -0.19 -4.04 16.40 44.97 0.74 -3.30 16 14 C -0.12 -2.96 6.78 31.80 0.22 -2.75 16 15 C 0.04 1.29 5.79 86.65 0.50 1.80 16 16 N -0.51 -14.79 4.62 -862.62 -3.99 -18.77 16 17 C 0.05 1.60 5.18 85.56 0.44 2.05 16 18 C 0.44 20.08 7.47 87.66 0.65 20.73 16 19 O -0.62 -33.34 14.39 -3.06 -0.04 -33.38 16 20 N -0.57 -28.43 5.29 -306.99 -1.62 -30.05 16 21 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 22 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -48.45 13.05 21.66 0.28 -48.16 16 25 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.42 2.45 8.29 -92.71 -0.77 1.68 16 33 H 0.18 -0.11 8.14 -2.38 -0.02 -0.13 16 34 H 0.17 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.08 1.78 8.05 -2.39 -0.02 1.77 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.30 7.91 -2.39 -0.02 1.28 16 38 H 0.06 2.28 6.84 -2.39 -0.02 2.26 16 39 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 41 H 0.40 18.43 7.90 -92.70 -0.73 17.70 16 42 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -76.19 363.55 1.30 -74.89 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.42 Total: 23.51 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 5.07 Total: 21.43 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -7.55 Total: -108.03 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.09 Total: -48.06 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 2.25 Total: -8.11 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -76.19 1.30 -74.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689279224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.941 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds