Wall clock time and date at job start Tue Mar 31 2020 21:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47432 * 2 1 4 4 C 1.53003 * 109.46747 * 240.00098 * 2 1 3 5 5 C 1.52997 * 109.47260 * 66.20917 * 4 2 1 6 6 F 1.39895 * 109.47320 * 54.23591 * 5 4 2 7 7 F 1.39896 * 109.47216 * 174.23827 * 5 4 2 8 8 F 1.39905 * 109.47106 * 294.23696 * 5 4 2 9 9 C 1.50694 * 109.46958 * 120.00157 * 2 1 3 10 10 O 1.21282 * 120.00226 * 119.99873 * 9 2 1 11 11 N 1.34779 * 120.00119 * 299.99737 * 9 2 1 12 12 C 1.46507 * 119.99826 * 180.02562 * 11 9 2 13 13 C 1.53513 * 114.16419 * 204.99736 * 12 11 9 14 14 N 1.47485 * 87.93151 * 220.32771 * 13 12 11 15 15 C 1.46896 * 110.99880 * 138.70365 * 14 13 12 16 16 C 1.50695 * 109.47065 * 170.00238 * 15 14 13 17 17 O 1.21293 * 120.00270 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00364 * 179.72615 * 16 15 14 19 19 C 1.37093 * 120.00205 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00099 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99865 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46767 * 90.00095 * 23 21 19 25 25 H 1.48494 * 109.47019 * 209.99751 * 23 21 19 26 26 H 1.48496 * 109.47147 * 330.00112 * 23 21 19 27 27 C 1.47483 * 87.83132 * 27.01222 * 14 13 12 28 28 H 1.08997 * 109.46846 * 52.57466 * 1 2 3 29 29 H 1.08998 * 109.47099 * 172.57743 * 1 2 3 30 30 H 1.09004 * 109.46733 * 292.58224 * 1 2 3 31 31 H 1.09004 * 109.46950 * 186.20978 * 4 2 1 32 32 H 1.08999 * 109.46918 * 306.20411 * 4 2 1 33 33 H 0.96999 * 120.00155 * 359.97438 * 11 9 2 34 34 H 1.08989 * 113.38116 * 338.07553 * 12 11 9 35 35 H 1.09002 * 113.47601 * 105.56725 * 13 12 11 36 36 H 1.08996 * 113.53710 * 335.10297 * 13 12 11 37 37 H 1.09005 * 109.47164 * 50.00253 * 15 14 13 38 38 H 1.09001 * 109.47287 * 290.00175 * 15 14 13 39 39 H 0.97003 * 119.99386 * 0.02562 * 18 16 15 40 40 H 0.97004 * 119.99750 * 180.02562 * 22 21 19 41 41 H 1.08999 * 113.47580 * 87.75705 * 27 14 13 42 42 H 1.08994 * 113.47570 * 218.21791 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6613 0.0844 -2.4936 6 9 2.1293 1.3960 -2.3602 7 9 2.2389 -0.5040 -3.6238 8 9 0.2695 0.0980 -2.6347 9 6 2.0323 -0.7104 1.2304 10 8 2.7296 -1.6965 1.1192 11 7 1.7068 -0.2500 2.4545 12 6 2.1956 -0.9404 3.6507 13 6 1.3235 -0.7323 4.8969 14 7 2.5667 -0.6202 5.6825 15 6 2.4656 0.4561 6.6771 16 6 3.6417 0.3841 7.6164 17 8 4.4818 -0.4786 7.4714 18 7 3.7633 1.2821 8.6142 19 6 4.8330 1.2162 9.4691 20 1 5.5785 0.4451 9.3428 21 6 4.9587 2.1424 10.4973 22 7 4.0518 3.0810 10.6506 23 14 6.4166 2.0531 11.6618 24 1 7.5317 2.8721 11.1223 25 1 6.0188 2.5748 12.9939 26 1 6.8583 0.6416 11.7946 27 6 3.2330 -0.1451 4.4555 28 1 -0.3633 0.6245 -0.8161 29 1 -0.3633 -1.0190 -0.1328 30 1 -0.3633 0.3947 0.9489 31 1 3.1243 -0.8186 -1.1955 32 1 1.5887 -1.7118 -1.3065 33 1 1.1495 0.5389 2.5436 34 1 2.4726 -1.9785 3.4681 35 1 0.7227 -1.6038 5.1569 36 1 0.7412 0.1887 4.8718 37 1 1.5410 0.3422 7.2431 38 1 2.4644 1.4208 6.1696 39 1 3.0935 1.9745 8.7277 40 1 4.1397 3.7278 11.3682 41 1 3.1608 0.9329 4.3117 42 1 4.2505 -0.5189 4.3415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692217664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:06 Heat of formation + Delta-G solvation = -192.155181 kcal Electronic energy + Delta-G solvation = -28683.501743 eV Core-core repulsion = 23863.714222 eV Total energy + Delta-G solvation = -4819.787521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.56334 -48.05279 -48.01252 -40.85864 -39.55801 -37.76209 -35.40493 -34.37489 -33.84136 -31.28567 -30.19783 -29.25065 -25.99411 -25.94085 -25.13415 -23.86479 -22.66438 -20.68983 -20.17063 -19.28287 -19.02553 -18.94807 -18.03805 -17.92140 -16.83367 -16.71294 -16.15825 -15.83642 -15.30627 -15.23636 -14.94865 -14.81359 -14.66915 -14.48742 -14.38438 -14.20363 -14.15713 -14.00746 -13.84114 -13.42412 -13.27016 -12.95785 -12.70122 -12.63550 -12.32026 -12.10870 -11.96210 -11.83041 -11.65089 -11.54106 -11.26491 -11.08450 -10.71574 -10.39768 -10.22862 -10.16929 -9.50932 -9.30238 -8.90391 -8.24752 -7.97085 -6.42602 -3.83225 2.20976 2.25203 2.73789 3.17337 3.25983 3.32241 3.39455 3.50193 3.62069 3.88254 3.96807 4.11413 4.19465 4.25941 4.36101 4.39166 4.65655 4.73549 4.92228 4.97336 5.06589 5.11879 5.17983 5.26099 5.26996 5.33382 5.52627 5.59895 5.60627 5.62575 5.78699 5.99083 6.15881 6.24846 6.44749 7.03418 7.13367 7.54654 7.82868 8.05182 8.61158 9.17816 9.53368 10.05832 10.75261 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.001744 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.908717 B =16051.334569 C =16229.873714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 H 0.113 0.887 4 C -0.149 4.149 5 C 0.454 3.546 6 F -0.183 7.183 7 F -0.183 7.183 8 F -0.181 7.181 9 C 0.525 3.475 10 O -0.533 6.533 11 N -0.714 5.714 12 C 0.117 3.883 13 C -0.013 4.013 14 N -0.434 5.434 15 C 0.011 3.989 16 C 0.445 3.555 17 O -0.573 6.573 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.009 4.009 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.402 0.598 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.151 -1.849 -24.712 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.138 4.138 3 H 0.131 0.869 4 C -0.188 4.188 5 C 0.399 3.601 6 F -0.165 7.165 7 F -0.164 7.164 8 F -0.163 7.163 9 C 0.311 3.689 10 O -0.409 6.409 11 N -0.365 5.365 12 C 0.012 3.988 13 C -0.143 4.143 14 N -0.156 5.156 15 C -0.121 4.121 16 C 0.230 3.770 17 O -0.456 6.456 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.139 4.139 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.237 0.763 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.823 -3.550 -24.344 26.877 hybrid contribution -0.385 1.950 0.324 2.014 sum -11.208 -1.599 -24.020 26.554 Atomic orbital electron populations 1.22119 0.91585 1.04035 1.03965 1.21294 0.98757 1.01553 0.92163 0.86921 1.22721 1.06638 1.00276 0.89140 1.20563 0.74597 0.78769 0.86121 1.93189 1.88431 1.38923 1.95911 1.93203 1.84439 1.83817 1.54933 1.93154 1.30390 1.96459 1.96250 1.20228 0.79880 0.84384 0.84425 1.90753 1.37394 1.26081 1.86669 1.45938 1.53442 1.31759 1.05395 1.22745 0.95304 0.98825 0.81905 1.24319 0.95107 1.02476 0.92446 1.68802 1.06976 1.35277 1.04551 1.22501 1.00017 0.93505 0.96084 1.19635 0.88285 0.84928 0.84123 1.90538 1.43607 1.37507 1.73985 1.41866 1.24227 1.27826 1.26492 1.19698 1.02114 1.13795 1.07114 0.87937 1.25258 0.98742 0.95650 0.98371 1.69611 1.34833 1.16789 1.33262 0.85853 0.80657 0.78768 0.79003 1.20431 1.20930 1.19393 1.24407 1.01055 0.98649 0.89776 0.90068 0.91255 0.91312 0.86137 0.86386 0.76340 0.85133 0.88810 0.91084 0.89215 0.92222 0.77580 0.91912 0.91152 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.37 37.16 0.31 -0.41 16 2 C -0.12 -0.68 2.63 -91.77 -0.24 -0.92 16 3 H 0.11 0.54 7.47 -51.93 -0.39 0.15 16 4 C -0.15 -0.92 4.20 -26.73 -0.11 -1.03 16 5 C 0.45 3.04 3.13 37.16 0.12 3.16 16 6 F -0.18 -1.37 16.46 2.25 0.04 -1.33 16 7 F -0.18 -1.45 17.32 2.25 0.04 -1.42 16 8 F -0.18 -1.23 14.38 2.25 0.03 -1.20 16 9 C 0.53 4.72 7.15 -10.99 -0.08 4.65 16 10 O -0.53 -6.93 15.49 5.56 0.09 -6.84 16 11 N -0.71 -5.68 5.23 -53.54 -0.28 -5.96 16 12 C 0.12 1.28 4.59 -67.71 -0.31 0.97 16 13 C -0.01 -0.14 7.45 -7.55 -0.06 -0.20 16 14 N -0.43 -6.86 5.82 -246.12 -1.43 -8.30 16 15 C 0.01 0.19 5.30 -4.98 -0.03 0.16 16 16 C 0.45 10.54 7.85 -10.99 -0.09 10.45 16 17 O -0.57 -15.91 16.01 5.55 0.09 -15.82 16 18 N -0.57 -14.31 5.29 -10.97 -0.06 -14.37 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.01 -0.12 7.52 -7.55 -0.06 -0.18 16 28 H 0.08 0.36 6.00 -51.93 -0.31 0.05 16 29 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.23 7.37 -51.93 -0.38 -0.15 16 31 H 0.12 0.79 7.91 -51.93 -0.41 0.38 16 32 H 0.12 0.68 8.12 -51.93 -0.42 0.25 16 33 H 0.40 2.07 8.10 -40.82 -0.33 1.73 16 34 H 0.13 1.66 7.45 -51.94 -0.39 1.27 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 37 H 0.09 1.35 8.08 -51.93 -0.42 0.94 16 38 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 39 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.07 0.87 7.42 -51.93 -0.39 0.49 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -34.19 364.19 -6.41 -40.60 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.33 Total: 8.14 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.78 Total: 8.66 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -1.05 Total: -52.34 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.66 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.11 Total: -3.95 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.19 -6.41 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692217664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.553 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds