Wall clock time and date at job start Tue Mar 31 2020 21:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47432 * 2 1 4 4 C 1.53003 * 109.46747 * 240.00098 * 2 1 3 5 5 C 1.52997 * 109.47260 * 66.20917 * 4 2 1 6 6 F 1.39895 * 109.47320 * 54.23591 * 5 4 2 7 7 F 1.39896 * 109.47216 * 174.23827 * 5 4 2 8 8 F 1.39905 * 109.47106 * 294.23696 * 5 4 2 9 9 C 1.50694 * 109.46958 * 120.00157 * 2 1 3 10 10 O 1.21282 * 120.00226 * 119.99873 * 9 2 1 11 11 N 1.34779 * 120.00119 * 299.99737 * 9 2 1 12 12 C 1.46507 * 119.99826 * 180.02562 * 11 9 2 13 13 C 1.53513 * 114.16419 * 204.99736 * 12 11 9 14 14 N 1.47485 * 87.93151 * 220.32771 * 13 12 11 15 15 C 1.46896 * 110.99880 * 138.70365 * 14 13 12 16 16 C 1.50695 * 109.47065 * 170.00238 * 15 14 13 17 17 O 1.21293 * 120.00270 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00364 * 179.72615 * 16 15 14 19 19 C 1.37093 * 120.00205 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00099 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99865 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46767 * 90.00095 * 23 21 19 25 25 H 1.48494 * 109.47019 * 209.99751 * 23 21 19 26 26 H 1.48496 * 109.47147 * 330.00112 * 23 21 19 27 27 C 1.47483 * 87.83132 * 27.01222 * 14 13 12 28 28 H 1.08997 * 109.46846 * 52.57466 * 1 2 3 29 29 H 1.08998 * 109.47099 * 172.57743 * 1 2 3 30 30 H 1.09004 * 109.46733 * 292.58224 * 1 2 3 31 31 H 1.09004 * 109.46950 * 186.20978 * 4 2 1 32 32 H 1.08999 * 109.46918 * 306.20411 * 4 2 1 33 33 H 0.96999 * 120.00155 * 359.97438 * 11 9 2 34 34 H 1.08989 * 113.38116 * 338.07553 * 12 11 9 35 35 H 1.09002 * 113.47601 * 105.56725 * 13 12 11 36 36 H 1.08996 * 113.53710 * 335.10297 * 13 12 11 37 37 H 1.09005 * 109.47164 * 50.00253 * 15 14 13 38 38 H 1.09001 * 109.47287 * 290.00175 * 15 14 13 39 39 H 0.97003 * 119.99386 * 0.02562 * 18 16 15 40 40 H 0.97004 * 119.99750 * 180.02562 * 22 21 19 41 41 H 1.08999 * 113.47580 * 87.75705 * 27 14 13 42 42 H 1.08994 * 113.47570 * 218.21791 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6613 0.0844 -2.4936 6 9 2.1293 1.3960 -2.3602 7 9 2.2389 -0.5040 -3.6238 8 9 0.2695 0.0980 -2.6347 9 6 2.0323 -0.7104 1.2304 10 8 2.7296 -1.6965 1.1192 11 7 1.7068 -0.2500 2.4545 12 6 2.1956 -0.9404 3.6507 13 6 1.3235 -0.7323 4.8969 14 7 2.5667 -0.6202 5.6825 15 6 2.4656 0.4561 6.6771 16 6 3.6417 0.3841 7.6164 17 8 4.4818 -0.4786 7.4714 18 7 3.7633 1.2821 8.6142 19 6 4.8330 1.2162 9.4691 20 1 5.5785 0.4451 9.3428 21 6 4.9587 2.1424 10.4973 22 7 4.0518 3.0810 10.6506 23 14 6.4166 2.0531 11.6618 24 1 7.5317 2.8721 11.1223 25 1 6.0188 2.5748 12.9939 26 1 6.8583 0.6416 11.7946 27 6 3.2330 -0.1451 4.4555 28 1 -0.3633 0.6245 -0.8161 29 1 -0.3633 -1.0190 -0.1328 30 1 -0.3633 0.3947 0.9489 31 1 3.1243 -0.8186 -1.1955 32 1 1.5887 -1.7118 -1.3065 33 1 1.1495 0.5389 2.5436 34 1 2.4726 -1.9785 3.4681 35 1 0.7227 -1.6038 5.1569 36 1 0.7412 0.1887 4.8718 37 1 1.5410 0.3422 7.2431 38 1 2.4644 1.4208 6.1696 39 1 3.0935 1.9745 8.7277 40 1 4.1397 3.7278 11.3682 41 1 3.1608 0.9329 4.3117 42 1 4.2505 -0.5189 4.3415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692217664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:05 Heat of formation + Delta-G solvation = -219.509189 kcal Electronic energy + Delta-G solvation = -28684.687902 eV Core-core repulsion = 23863.714222 eV Total energy + Delta-G solvation = -4820.973680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.12206 -48.61825 -48.57582 -41.79492 -40.55532 -39.51600 -35.99504 -35.95947 -35.13759 -33.28890 -31.32029 -29.90505 -27.40333 -26.95787 -26.05207 -25.04434 -23.45113 -21.48384 -21.17197 -20.84995 -19.91074 -19.59818 -19.52014 -18.58831 -17.92549 -17.59114 -17.49696 -16.61693 -16.53917 -16.46688 -16.03267 -15.75796 -15.62898 -15.51019 -15.29620 -15.04283 -14.96623 -14.78765 -14.73396 -14.55702 -14.24769 -13.99114 -13.68683 -13.67067 -13.51031 -13.07467 -13.02450 -12.76437 -12.66994 -12.45752 -12.40917 -12.27125 -12.22570 -12.12855 -11.83769 -11.50512 -10.93866 -10.39639 -10.12305 -10.01177 -9.77220 -8.47316 -5.95637 1.37076 1.40901 1.50924 1.53462 1.66049 2.05137 2.06898 2.29218 2.81029 2.91050 3.00571 3.09623 3.18839 3.30873 3.51861 3.55302 3.77613 3.83604 3.87608 4.09946 4.18823 4.27971 4.30682 4.40730 4.51826 4.53424 4.65946 4.71012 4.79819 4.83507 4.92184 4.95842 5.28992 5.33610 5.38573 5.41258 5.87620 6.07033 6.47271 6.61036 7.13361 7.16872 7.56817 8.14120 8.69986 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.001744 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.908717 B =16051.334569 C =16229.873714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 H 0.129 0.871 4 C -0.148 4.148 5 C 0.459 3.541 6 F -0.186 7.186 7 F -0.191 7.191 8 F -0.179 7.179 9 C 0.525 3.475 10 O -0.578 6.578 11 N -0.699 5.699 12 C 0.133 3.867 13 C 0.003 3.997 14 N -0.477 5.477 15 C 0.026 3.974 16 C 0.439 3.561 17 O -0.623 6.623 18 N -0.575 5.575 19 C -0.334 4.334 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.275 1.275 27 C -0.013 4.013 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.420 0.580 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.089 0.911 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.074 -0.435 -25.135 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.128 4.128 3 H 0.147 0.853 4 C -0.186 4.186 5 C 0.405 3.595 6 F -0.168 7.168 7 F -0.172 7.172 8 F -0.161 7.161 9 C 0.312 3.688 10 O -0.457 6.457 11 N -0.351 5.351 12 C 0.027 3.973 13 C -0.126 4.126 14 N -0.199 5.199 15 C -0.106 4.106 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.213 5.213 19 C -0.463 4.463 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.194 1.194 26 H -0.200 1.200 27 C -0.144 4.144 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.259 0.741 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.805 -2.086 -24.779 27.970 hybrid contribution 0.212 1.485 0.404 1.554 sum -12.593 -0.601 -24.375 27.442 Atomic orbital electron populations 1.22138 0.90074 1.04134 1.05133 1.21283 0.99810 1.01659 0.90090 0.85290 1.22702 1.06333 1.00470 0.89125 1.20551 0.74524 0.78523 0.85915 1.93182 1.88501 1.39208 1.95901 1.93187 1.84625 1.83970 1.55464 1.93158 1.30247 1.96440 1.96247 1.20765 0.78934 0.83774 0.85328 1.90745 1.39428 1.28205 1.87286 1.45739 1.53110 1.32023 1.04225 1.22283 0.94492 0.97434 0.83106 1.24339 0.93494 1.04591 0.90192 1.68716 1.10389 1.35343 1.05499 1.22379 0.97215 0.95525 0.95452 1.20903 0.89383 0.83170 0.83936 1.90503 1.45989 1.39204 1.75143 1.41933 1.23890 1.28577 1.26882 1.19618 1.03216 1.14322 1.09163 0.90725 1.26001 1.01156 0.94898 0.99160 1.69659 1.35738 1.16864 1.33716 0.84957 0.77695 0.78391 0.77477 1.19640 1.19359 1.20045 1.24455 0.99884 0.99937 0.90086 0.89657 0.91558 0.89576 0.86799 0.86099 0.74150 0.87353 0.87900 0.87457 0.86737 0.89266 0.76881 0.91280 0.89298 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.37 71.98 0.60 -0.36 16 2 C -0.11 -1.03 2.63 -11.54 -0.03 -1.06 16 3 H 0.13 0.87 7.47 -2.39 -0.02 0.85 16 4 C -0.15 -1.66 4.20 30.59 0.13 -1.53 16 5 C 0.46 5.57 3.13 71.98 0.23 5.80 16 6 F -0.19 -2.50 16.46 44.97 0.74 -1.76 16 7 F -0.19 -2.91 17.32 44.97 0.78 -2.13 16 8 F -0.18 -2.13 14.38 44.97 0.65 -1.48 16 9 C 0.52 8.66 7.15 87.65 0.63 9.29 16 10 O -0.58 -14.99 15.49 -3.04 -0.05 -15.03 16 11 N -0.70 -9.38 5.23 -441.70 -2.31 -11.69 16 12 C 0.13 2.72 4.59 45.44 0.21 2.93 16 13 C 0.00 0.05 7.45 83.57 0.62 0.67 16 14 N -0.48 -14.50 5.82 -932.58 -5.43 -19.93 16 15 C 0.03 0.83 5.30 85.56 0.45 1.29 16 16 C 0.44 20.95 7.85 87.65 0.69 21.64 16 17 O -0.62 -35.78 16.01 -3.07 -0.05 -35.83 16 18 N -0.57 -29.35 5.29 -306.99 -1.62 -30.97 16 19 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 20 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 23 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 27 C -0.01 -0.36 7.52 83.57 0.63 0.27 16 28 H 0.08 0.50 6.00 -2.39 -0.01 0.49 16 29 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 30 H 0.09 0.24 7.37 -2.39 -0.02 0.22 16 31 H 0.11 1.46 7.91 -2.39 -0.02 1.44 16 32 H 0.12 1.29 8.12 -2.39 -0.02 1.27 16 33 H 0.42 2.63 8.10 -92.71 -0.75 1.88 16 34 H 0.11 2.77 7.45 -2.39 -0.02 2.75 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.23 7.90 -2.39 -0.02 1.21 16 37 H 0.11 3.10 8.08 -2.38 -0.02 3.08 16 38 H 0.09 2.33 7.30 -2.39 -0.02 2.31 16 39 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 40 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.09 2.02 7.42 -2.39 -0.02 2.00 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -77.08 364.19 0.06 -77.02 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.39 Total: 25.00 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 5.43 Total: 20.46 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -9.08 Total: -111.39 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -0.10 Total: -50.86 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 2.17 Total: -5.37 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -77.08 0.06 -77.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692217664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.490 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds