Wall clock time and date at job start Tue Mar 31 2020 21:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47416 * 2 1 4 4 N 1.46507 * 109.47021 * 120.00560 * 2 1 3 5 5 C 1.36935 * 119.99611 * 274.99526 * 4 2 1 6 6 H 1.08000 * 119.99803 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00041 * 179.72380 * 5 4 2 8 8 N 1.31618 * 119.99691 * 0.27663 * 7 5 4 9 9 Si 1.86798 * 119.99956 * 180.27954 * 7 5 4 10 10 H 1.48503 * 109.47336 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47365 * 120.00357 * 9 7 5 12 12 H 1.48500 * 109.47032 * 239.99977 * 9 7 5 13 13 C 1.53005 * 109.47273 * 239.99995 * 2 1 3 14 14 H 1.08999 * 109.58558 * 53.80342 * 13 2 1 15 15 C 1.53200 * 109.58679 * 293.52477 * 13 2 1 16 16 C 1.53039 * 109.31143 * 185.57283 * 15 13 2 17 17 C 1.53042 * 109.53489 * 61.36692 * 16 15 13 18 18 C 1.53197 * 109.31426 * 298.63183 * 17 16 15 19 19 N 1.46921 * 108.77200 * 54.63521 * 18 17 16 20 20 C 1.34782 * 120.62886 * 126.39252 * 19 18 17 21 21 O 1.21552 * 120.00275 * 185.69841 * 20 19 18 22 22 C 1.47844 * 119.99842 * 5.70094 * 20 19 18 23 23 C 1.39563 * 120.55358 * 38.59541 * 22 20 19 24 24 N 1.31658 * 120.59369 * 179.70087 * 23 22 20 25 25 C 1.31950 * 121.89410 * 0.59036 * 24 23 22 26 26 C 1.38425 * 121.06468 * 359.69264 * 25 24 23 27 27 Cl 1.73591 * 120.36424 * 180.02562 * 26 25 24 28 28 C 1.38512 * 119.27245 * 0.02562 * 26 25 24 29 29 H 1.09004 * 109.46884 * 65.68065 * 1 2 3 30 30 H 1.09003 * 109.47618 * 185.67443 * 1 2 3 31 31 H 1.08999 * 109.47466 * 305.67867 * 1 2 3 32 32 H 0.96995 * 120.00151 * 94.99831 * 4 2 1 33 33 H 0.97003 * 119.99665 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.49173 * 305.52786 * 15 13 2 35 35 H 1.09000 * 109.49406 * 65.59017 * 15 13 2 36 36 H 1.08998 * 109.45909 * 181.38277 * 16 15 13 37 37 H 1.08995 * 109.46656 * 301.34849 * 16 15 13 38 38 H 1.09002 * 109.50032 * 58.58331 * 17 16 15 39 39 H 1.09006 * 109.49520 * 178.68208 * 17 16 15 40 40 H 1.09001 * 109.58331 * 174.42583 * 18 17 16 41 41 H 1.08999 * 109.58578 * 294.84809 * 18 17 16 42 42 H 1.07997 * 119.70529 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.46859 * 179.72446 * 25 24 23 44 44 H 1.08002 * 120.86098 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6908 1.1962 5 6 2.1491 -0.0077 2.3757 6 1 1.8919 1.0401 2.4243 7 6 2.6063 -0.6634 3.5105 8 7 2.9192 -1.9405 3.4514 9 14 2.7773 0.2665 5.1215 10 1 2.3648 1.6793 4.9238 11 1 1.9117 -0.3630 6.1509 12 1 4.1921 0.2228 5.5705 13 6 2.0400 -0.7213 -1.2493 14 1 1.5900 -0.2769 -2.1370 15 6 1.6680 -2.2055 -1.1732 16 6 2.2992 -2.9466 -2.3541 17 6 3.8230 -2.8260 -2.2786 18 6 4.2194 -1.3488 -2.3671 19 7 3.5026 -0.6035 -1.3234 20 6 4.1740 0.1735 -0.4505 21 8 3.5838 0.7025 0.4711 22 6 5.6285 0.3825 -0.6140 23 6 6.1851 0.5334 -1.8849 24 7 7.4794 0.7253 -2.0310 25 6 8.2984 0.7715 -0.9975 26 6 7.8260 0.6249 0.2954 27 17 8.9197 0.6893 1.6418 28 6 6.4710 0.4262 0.5029 29 1 -0.3633 0.4232 -0.9365 30 1 -0.3634 -1.0226 0.1016 31 1 -0.3634 0.5994 0.8347 32 1 2.2489 -1.6319 1.1526 33 1 3.2391 -2.3987 4.2443 34 1 2.0397 -2.6262 -0.2390 35 1 0.5839 -2.3114 -1.2141 36 1 2.0159 -3.9984 -2.3160 37 1 1.9462 -2.5092 -3.2880 38 1 4.1744 -3.2409 -1.3339 39 1 4.2728 -3.3736 -3.1068 40 1 5.2941 -1.2492 -2.2147 41 1 3.9493 -0.9562 -3.3474 42 1 5.5479 0.4967 -2.7560 43 1 9.3544 0.9266 -1.1629 44 1 6.0747 0.3091 1.5007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713004621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:31 Heat of formation + Delta-G solvation = 53.234841 kcal Electronic energy + Delta-G solvation = -28661.043543 eV Core-core repulsion = 24834.462836 eV Total energy + Delta-G solvation = -3826.580707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.88196 -39.56200 -36.93818 -36.69998 -35.32163 -32.78782 -32.44668 -32.16821 -30.96514 -29.64094 -28.07195 -25.70384 -24.18381 -23.89186 -23.58605 -22.94600 -20.87079 -20.12716 -18.91759 -17.22755 -17.07727 -16.98777 -16.52854 -15.52603 -15.07967 -14.98827 -14.58973 -14.31268 -14.07652 -13.91971 -13.65376 -13.51196 -13.19000 -12.95897 -12.79760 -12.50087 -12.26785 -12.17354 -12.05167 -11.91294 -11.41558 -11.29460 -11.12397 -10.86223 -10.71423 -10.66245 -10.56502 -10.40142 -10.15047 -9.90468 -9.81902 -9.70424 -9.38724 -9.01026 -8.72266 -8.38279 -8.00603 -6.60506 -5.52818 -2.74645 0.61294 0.99629 1.91922 3.13177 3.25116 3.54567 3.61441 3.62930 3.77410 4.18802 4.56274 4.59996 4.78522 4.79814 4.87850 5.00631 5.04110 5.13021 5.24842 5.32077 5.45115 5.50628 5.63604 5.73852 5.78908 5.81270 5.86809 5.99113 6.01061 6.07472 6.13770 6.24480 6.28830 6.29404 6.40910 6.47563 6.57450 6.83850 6.97695 7.02758 7.33932 7.60184 7.84306 7.97705 8.64762 8.81021 9.77523 10.33959 10.70405 11.71422 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.006200 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.856984 B = 4514.721862 C = 6990.631674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.170 3.830 3 H 0.079 0.921 4 N -0.702 5.702 5 C -0.174 4.174 6 H 0.065 0.935 7 C -0.030 4.030 8 N -0.946 5.946 9 Si 0.895 3.105 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.297 1.297 13 C 0.148 3.852 14 H 0.065 0.935 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.101 3.899 19 N -0.604 5.604 20 C 0.535 3.465 21 O -0.429 6.429 22 C -0.149 4.149 23 C 0.120 3.880 24 N -0.475 5.475 25 C 0.119 3.881 26 C -0.093 4.093 27 Cl -0.051 7.051 28 C -0.012 4.012 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.378 0.622 33 H 0.247 0.753 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 1.165 -15.663 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.059 3.941 3 H 0.097 0.903 4 N -0.344 5.344 5 C -0.306 4.306 6 H 0.083 0.917 7 C -0.223 4.223 8 N -0.599 5.599 9 Si 0.728 3.272 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.225 1.225 13 C 0.045 3.955 14 H 0.083 0.917 15 C -0.172 4.172 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.022 4.022 19 N -0.341 5.341 20 C 0.319 3.681 21 O -0.298 6.298 22 C -0.155 4.155 23 C -0.038 4.038 24 N -0.183 5.183 25 C -0.039 4.039 26 C -0.122 4.122 27 Cl -0.023 7.023 28 C -0.039 4.039 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.214 0.786 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.185 0.815 43 H 0.182 0.818 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.886 1.748 -15.699 17.231 hybrid contribution 0.079 -0.177 1.959 1.969 sum 6.965 1.572 -13.739 15.484 Atomic orbital electron populations 1.22574 0.99990 1.00988 0.99420 1.20685 0.90357 0.97583 0.85426 0.90328 1.42434 1.77224 1.09656 1.05121 1.19118 1.32091 0.93148 0.86260 0.91702 1.24546 1.04303 0.95990 0.97501 1.69647 1.53783 1.08498 1.27961 0.86247 0.77023 0.78816 0.85104 1.20937 1.22576 1.22513 1.21636 0.78312 0.96063 0.99519 0.91687 1.21998 1.00653 0.95268 0.99303 1.21501 0.94921 1.00403 0.98565 1.21916 0.96897 0.95938 1.02613 1.21960 0.97137 0.92105 0.90993 1.47705 1.07034 1.47006 1.32321 1.17949 0.85293 0.82165 0.82726 1.91164 1.65969 1.45788 1.26854 1.21335 0.96478 1.03614 0.94057 1.23243 0.91318 0.93037 0.96172 1.67822 1.04465 1.13108 1.32927 1.22852 1.00409 0.94526 0.86083 1.22002 0.92216 1.07393 0.90624 1.98390 1.62479 1.96774 1.44632 1.21798 0.90362 0.90645 1.01073 0.94865 0.93502 0.92854 0.78604 0.94316 0.90078 0.91000 0.92071 0.92345 0.91149 0.91342 0.89964 0.91676 0.81491 0.81764 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.14 37.15 0.34 -2.67 16 2 C 0.17 3.32 1.88 -67.93 -0.13 3.19 16 3 H 0.08 1.71 5.94 -52.09 -0.31 1.40 16 4 N -0.70 -17.03 3.60 -53.43 -0.19 -17.23 16 5 C -0.17 -4.85 7.95 -15.06 -0.12 -4.97 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.03 -0.89 5.50 -17.43 -0.10 -0.98 16 8 N -0.95 -28.84 13.06 55.49 0.72 -28.12 16 9 Si 0.89 23.46 29.55 -169.99 -5.02 18.43 16 10 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 11 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 12 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 13 C 0.15 2.30 2.72 -67.60 -0.18 2.12 16 14 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.13 -1.98 4.87 -26.61 -0.13 -2.11 16 16 C -0.12 -1.34 5.88 -26.69 -0.16 -1.50 16 17 C -0.14 -1.54 6.08 -26.61 -0.16 -1.70 16 18 C 0.10 1.16 4.86 -3.71 -0.02 1.14 16 19 N -0.60 -9.12 2.97 -166.32 -0.49 -9.61 16 20 C 0.53 9.57 7.06 -12.33 -0.09 9.49 16 21 O -0.43 -9.57 9.61 5.32 0.05 -9.51 16 22 C -0.15 -2.30 5.19 -104.83 -0.54 -2.84 16 23 C 0.12 1.51 8.56 -17.13 -0.15 1.36 16 24 N -0.47 -5.96 10.34 -12.88 -0.13 -6.09 16 25 C 0.12 1.40 10.97 -17.43 -0.19 1.21 16 26 C -0.09 -1.26 6.34 -39.41 -0.25 -1.51 16 27 Cl -0.05 -0.66 28.98 -51.86 -1.50 -2.16 16 28 C -0.01 -0.19 9.59 -38.83 -0.37 -0.57 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.83 7.03 -51.93 -0.37 0.47 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.38 9.81 5.62 -40.82 -0.23 9.58 16 33 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 1.50 6.04 -51.93 -0.31 1.19 16 35 H 0.07 1.01 7.04 -51.93 -0.37 0.65 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.92 4.64 -51.93 -0.24 0.68 16 41 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 42 H 0.17 1.70 6.41 -52.49 -0.34 1.37 16 43 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.16 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -31.84 356.11 -9.38 -41.22 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.93 Total: 8.04 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.25 Total: -0.34 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.09 Total: -61.05 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.05 Total: -9.51 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.43 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.84 -9.38 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713004621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.458 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds