Wall clock time and date at job start Tue Mar 31 2020 21:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47416 * 2 1 4 4 N 1.46507 * 109.47021 * 120.00560 * 2 1 3 5 5 C 1.36935 * 119.99611 * 274.99526 * 4 2 1 6 6 H 1.08000 * 119.99803 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00041 * 179.72380 * 5 4 2 8 8 N 1.31618 * 119.99691 * 0.27663 * 7 5 4 9 9 Si 1.86798 * 119.99956 * 180.27954 * 7 5 4 10 10 H 1.48503 * 109.47336 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47365 * 120.00357 * 9 7 5 12 12 H 1.48500 * 109.47032 * 239.99977 * 9 7 5 13 13 C 1.53005 * 109.47273 * 239.99995 * 2 1 3 14 14 H 1.08999 * 109.58558 * 53.80342 * 13 2 1 15 15 C 1.53200 * 109.58679 * 293.52477 * 13 2 1 16 16 C 1.53039 * 109.31143 * 185.57283 * 15 13 2 17 17 C 1.53042 * 109.53489 * 61.36692 * 16 15 13 18 18 C 1.53197 * 109.31426 * 298.63183 * 17 16 15 19 19 N 1.46921 * 108.77200 * 54.63521 * 18 17 16 20 20 C 1.34782 * 120.62886 * 126.39252 * 19 18 17 21 21 O 1.21552 * 120.00275 * 185.69841 * 20 19 18 22 22 C 1.47844 * 119.99842 * 5.70094 * 20 19 18 23 23 C 1.39563 * 120.55358 * 38.59541 * 22 20 19 24 24 N 1.31658 * 120.59369 * 179.70087 * 23 22 20 25 25 C 1.31950 * 121.89410 * 0.59036 * 24 23 22 26 26 C 1.38425 * 121.06468 * 359.69264 * 25 24 23 27 27 Cl 1.73591 * 120.36424 * 180.02562 * 26 25 24 28 28 C 1.38512 * 119.27245 * 0.02562 * 26 25 24 29 29 H 1.09004 * 109.46884 * 65.68065 * 1 2 3 30 30 H 1.09003 * 109.47618 * 185.67443 * 1 2 3 31 31 H 1.08999 * 109.47466 * 305.67867 * 1 2 3 32 32 H 0.96995 * 120.00151 * 94.99831 * 4 2 1 33 33 H 0.97003 * 119.99665 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.49173 * 305.52786 * 15 13 2 35 35 H 1.09000 * 109.49406 * 65.59017 * 15 13 2 36 36 H 1.08998 * 109.45909 * 181.38277 * 16 15 13 37 37 H 1.08995 * 109.46656 * 301.34849 * 16 15 13 38 38 H 1.09002 * 109.50032 * 58.58331 * 17 16 15 39 39 H 1.09006 * 109.49520 * 178.68208 * 17 16 15 40 40 H 1.09001 * 109.58331 * 174.42583 * 18 17 16 41 41 H 1.08999 * 109.58578 * 294.84809 * 18 17 16 42 42 H 1.07997 * 119.70529 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.46859 * 179.72446 * 25 24 23 44 44 H 1.08002 * 120.86098 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6908 1.1962 5 6 2.1491 -0.0077 2.3757 6 1 1.8919 1.0401 2.4243 7 6 2.6063 -0.6634 3.5105 8 7 2.9192 -1.9405 3.4514 9 14 2.7773 0.2665 5.1215 10 1 2.3648 1.6793 4.9238 11 1 1.9117 -0.3630 6.1509 12 1 4.1921 0.2228 5.5705 13 6 2.0400 -0.7213 -1.2493 14 1 1.5900 -0.2769 -2.1370 15 6 1.6680 -2.2055 -1.1732 16 6 2.2992 -2.9466 -2.3541 17 6 3.8230 -2.8260 -2.2786 18 6 4.2194 -1.3488 -2.3671 19 7 3.5026 -0.6035 -1.3234 20 6 4.1740 0.1735 -0.4505 21 8 3.5838 0.7025 0.4711 22 6 5.6285 0.3825 -0.6140 23 6 6.1851 0.5334 -1.8849 24 7 7.4794 0.7253 -2.0310 25 6 8.2984 0.7715 -0.9975 26 6 7.8260 0.6249 0.2954 27 17 8.9197 0.6893 1.6418 28 6 6.4710 0.4262 0.5029 29 1 -0.3633 0.4232 -0.9365 30 1 -0.3634 -1.0226 0.1016 31 1 -0.3634 0.5994 0.8347 32 1 2.2489 -1.6319 1.1526 33 1 3.2391 -2.3987 4.2443 34 1 2.0397 -2.6262 -0.2390 35 1 0.5839 -2.3114 -1.2141 36 1 2.0159 -3.9984 -2.3160 37 1 1.9462 -2.5092 -3.2880 38 1 4.1744 -3.2409 -1.3339 39 1 4.2728 -3.3736 -3.1068 40 1 5.2941 -1.2492 -2.2147 41 1 3.9493 -0.9562 -3.3474 42 1 5.5479 0.4967 -2.7560 43 1 9.3544 0.9266 -1.1629 44 1 6.0747 0.3091 1.5007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713004621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:30 Heat of formation + Delta-G solvation = 32.999927 kcal Electronic energy + Delta-G solvation = -28661.920995 eV Core-core repulsion = 24834.462836 eV Total energy + Delta-G solvation = -3827.458158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07235 -40.74506 -38.21397 -37.77117 -36.89666 -34.29261 -33.79900 -33.51363 -32.12982 -31.17159 -29.68902 -26.90872 -25.78524 -25.24297 -24.69393 -24.35599 -22.00969 -21.51962 -20.17233 -19.09002 -18.31609 -18.17481 -17.66854 -16.88983 -16.44023 -16.20338 -16.07813 -15.68217 -15.57087 -15.23126 -14.93024 -14.84021 -14.42368 -14.38135 -14.01782 -13.84530 -13.58509 -13.54887 -13.24512 -13.14053 -13.01834 -12.85483 -12.61314 -12.37847 -12.27955 -12.11492 -11.95568 -11.70698 -11.58175 -11.35450 -11.30183 -10.99217 -10.96075 -10.77736 -10.04823 -9.79449 -9.35878 -8.60927 -7.77371 -4.94843 -0.45553 -0.15521 0.85033 1.40424 1.41804 1.50282 1.87287 2.10225 2.60905 2.64776 3.21023 3.45566 3.54877 3.56786 3.64504 3.87498 3.94567 3.96420 4.07272 4.12238 4.28666 4.29509 4.37368 4.44009 4.65666 4.69641 4.72145 4.81096 4.86031 4.90421 4.97754 5.04188 5.11232 5.15931 5.23294 5.29125 5.32499 5.48192 5.55576 5.61212 5.68274 5.93182 6.46083 6.55408 6.59996 7.45496 7.55263 8.32442 8.55784 9.47664 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.006200 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.856984 B = 4514.721862 C = 6990.631674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.058 0.942 4 N -0.703 5.703 5 C -0.149 4.149 6 H 0.052 0.948 7 C -0.094 4.094 8 N -0.979 5.979 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.304 1.304 13 C 0.151 3.849 14 H 0.104 0.896 15 C -0.129 4.129 16 C -0.109 4.109 17 C -0.133 4.133 18 C 0.096 3.904 19 N -0.600 5.600 20 C 0.529 3.471 21 O -0.492 6.492 22 C -0.166 4.166 23 C 0.141 3.859 24 N -0.472 5.472 25 C 0.136 3.864 26 C -0.096 4.096 27 Cl -0.048 7.048 28 C -0.034 4.034 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.368 0.632 33 H 0.238 0.762 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.199 0.801 43 H 0.201 0.799 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 1.407 -19.906 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.076 0.924 4 N -0.344 5.344 5 C -0.282 4.282 6 H 0.070 0.930 7 C -0.283 4.283 8 N -0.635 5.635 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.228 1.228 12 H -0.233 1.233 13 C 0.048 3.952 14 H 0.122 0.878 15 C -0.167 4.167 16 C -0.146 4.146 17 C -0.172 4.172 18 C -0.025 4.025 19 N -0.335 5.335 20 C 0.315 3.685 21 O -0.365 6.365 22 C -0.172 4.172 23 C -0.016 4.016 24 N -0.180 5.180 25 C -0.021 4.021 26 C -0.125 4.125 27 Cl -0.019 7.019 28 C -0.061 4.061 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.202 0.798 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.216 0.784 43 H 0.218 0.782 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.468 2.001 -20.016 21.457 hybrid contribution -0.079 -0.205 3.144 3.152 sum 7.389 1.795 -16.872 18.506 Atomic orbital electron populations 1.22412 0.98309 1.00716 1.00535 1.20816 0.91317 0.96715 0.85699 0.92444 1.42520 1.77015 1.09108 1.05741 1.19218 1.29074 0.92421 0.87516 0.92974 1.25081 1.06262 0.96847 1.00114 1.69780 1.56195 1.09616 1.27914 0.85404 0.76314 0.78106 0.82288 1.20261 1.22756 1.23272 1.21607 0.78848 0.96242 0.98478 0.87812 1.21923 1.01236 0.94816 0.98772 1.21481 0.94606 1.00517 0.98032 1.21920 0.97049 0.96076 1.02118 1.22308 0.97012 0.91790 0.91439 1.47833 1.07071 1.46212 1.32395 1.18388 0.86272 0.81579 0.82257 1.91118 1.67390 1.48594 1.29443 1.21177 0.95107 1.05667 0.95200 1.23586 0.91640 0.90863 0.95544 1.67984 1.04273 1.13069 1.32684 1.23395 1.01881 0.91991 0.84829 1.22021 0.91113 1.07703 0.91663 1.98389 1.61986 1.96770 1.44805 1.21582 0.92043 0.92683 0.99759 0.90826 0.93668 0.95347 0.79760 0.95261 0.94840 0.90263 0.91470 0.89104 0.94772 0.87908 0.89720 0.87333 0.78404 0.78237 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 9.14 71.98 0.66 -4.92 16 2 C 0.16 6.45 1.88 44.99 0.08 6.53 16 3 H 0.06 2.57 5.94 -4.83 -0.03 2.54 16 4 N -0.70 -35.75 3.60 -322.94 -1.16 -36.91 16 5 C -0.15 -8.71 7.95 84.03 0.67 -8.04 16 6 H 0.05 3.14 7.83 -2.91 -0.02 3.11 16 7 C -0.09 -5.73 5.50 84.86 0.47 -5.27 16 8 N -0.98 -62.92 13.06 21.65 0.28 -62.63 16 9 Si 0.95 50.66 29.55 68.60 2.03 52.68 16 10 H -0.28 -14.34 7.11 99.48 0.71 -13.64 16 11 H -0.30 -15.95 7.11 99.48 0.71 -15.25 16 12 H -0.30 -16.47 7.11 99.48 0.71 -15.76 16 13 C 0.15 4.44 2.72 44.98 0.12 4.56 16 14 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.13 -3.64 4.87 30.67 0.15 -3.49 16 16 C -0.11 -2.13 5.88 30.62 0.18 -1.95 16 17 C -0.13 -2.63 6.08 30.67 0.19 -2.44 16 18 C 0.10 1.84 4.86 86.37 0.42 2.26 16 19 N -0.60 -17.27 2.97 -798.39 -2.37 -19.64 16 20 C 0.53 19.32 7.06 86.79 0.61 19.93 16 21 O -0.49 -23.15 9.61 -3.88 -0.04 -23.19 16 22 C -0.17 -5.12 5.19 -20.00 -0.10 -5.22 16 23 C 0.14 3.17 8.56 85.04 0.73 3.89 16 24 N -0.47 -10.27 10.34 -194.67 -2.01 -12.28 16 25 C 0.14 2.87 10.97 84.72 0.93 3.80 16 26 C -0.10 -2.56 6.34 22.38 0.14 -2.42 16 27 Cl -0.05 -1.23 28.98 -2.72 -0.08 -1.31 16 28 C -0.03 -1.13 9.59 22.75 0.22 -0.91 16 29 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.04 1.58 7.03 -2.39 -0.02 1.56 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.37 20.20 5.62 -92.71 -0.52 19.68 16 33 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.03 1.27 6.04 -2.39 -0.01 1.26 16 35 H 0.08 2.09 7.04 -2.39 -0.02 2.07 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.08 1.61 4.64 -2.39 -0.01 1.60 16 41 H 0.11 1.26 8.10 -2.39 -0.02 1.24 16 42 H 0.20 3.13 6.41 -2.91 -0.02 3.11 16 43 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 44 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -75.92 356.11 2.61 -73.32 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.50 Total: 23.65 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.46 Total: 6.31 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -5.26 Total: -131.46 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.19 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.03 Total: 52.68 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -75.92 2.61 -73.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713004621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.316 kcal (2) G-P(sol) polarization free energy of solvation -75.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds