Wall clock time and date at job start Tue Mar 31 2020 20:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47316 * 2 1 4 4 N 1.46498 * 109.47119 * 239.99547 * 2 1 3 5 5 C 1.36933 * 119.99868 * 85.00701 * 4 2 1 6 6 H 1.08001 * 120.00091 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00355 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00131 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47203 * 89.99968 * 9 7 5 11 11 H 1.48497 * 109.47127 * 210.00239 * 9 7 5 12 12 H 1.48502 * 109.46816 * 329.99917 * 9 7 5 13 13 C 1.53008 * 109.46921 * 119.99573 * 2 1 3 14 14 C 1.53040 * 109.45809 * 60.02666 * 13 2 1 15 15 C 1.53191 * 109.31150 * 178.59840 * 14 13 2 16 16 N 1.46929 * 108.76350 * 54.65604 * 15 14 13 17 17 C 1.34776 * 120.62821 * 126.35983 * 16 15 14 18 18 O 1.21528 * 120.00032 * 176.06233 * 17 16 15 19 19 C 1.48074 * 120.00238 * 356.06712 * 17 16 15 20 20 C 1.39874 * 120.93125 * 53.28652 * 19 17 16 21 21 C 1.38076 * 119.01706 * 179.97438 * 20 19 17 22 22 N 1.31847 * 120.94493 * 0.02562 * 21 20 19 23 23 C 1.31764 * 122.06718 * 359.97438 * 22 21 20 24 24 C 1.38350 * 120.86962 * 359.74115 * 23 22 21 25 25 Cl 1.73608 * 120.51762 * 180.26379 * 24 23 22 26 26 C 1.46926 * 118.74115 * 306.38707 * 16 15 14 27 27 C 1.53039 * 109.45765 * 299.97389 * 13 2 1 28 28 H 1.08998 * 109.47431 * 300.00190 * 1 2 3 29 29 H 1.08999 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46930 * 60.00457 * 1 2 3 31 31 H 0.97002 * 119.99974 * 264.99748 * 4 2 1 32 32 H 0.97001 * 120.00615 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.45842 * 180.02562 * 13 2 1 34 34 H 1.08995 * 109.50073 * 298.56794 * 14 13 2 35 35 H 1.09000 * 109.49699 * 58.66696 * 14 13 2 36 36 H 1.09005 * 109.59973 * 294.87249 * 15 14 13 37 37 H 1.08998 * 109.70656 * 174.50857 * 15 14 13 38 38 H 1.08005 * 120.48641 * 359.97438 * 20 19 17 39 39 H 1.08006 * 119.53037 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.56030 * 180.02562 * 23 22 21 41 41 H 1.09009 * 109.58274 * 293.82001 * 26 16 15 42 42 H 1.08997 * 109.70288 * 173.46750 * 26 16 15 43 43 H 1.09003 * 109.49839 * 301.33266 * 27 13 2 44 44 H 1.09002 * 109.50203 * 61.40449 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8921 1.0402 -2.4243 7 6 2.6114 -0.6622 -3.5091 8 7 2.7368 -0.0058 -4.6431 9 14 3.0555 -2.4747 -3.4252 10 1 1.8580 -3.2930 -3.7441 11 1 4.1305 -2.7669 -4.4071 12 1 3.5310 -2.8050 -2.0577 13 6 2.0400 -0.7212 1.2494 14 6 1.5302 -2.1642 1.2488 15 6 2.0713 -2.8931 2.4828 16 7 1.7084 -2.1256 3.6820 17 6 1.0550 -2.7151 4.7028 18 8 0.8236 -2.0891 5.7184 19 6 0.6190 -4.1254 4.5869 20 6 1.5261 -5.1323 4.2407 21 6 1.0768 -6.4344 4.1444 22 7 -0.1866 -6.7343 4.3728 23 6 -1.0747 -5.8181 4.7013 24 6 -0.7108 -4.4892 4.8262 25 17 -1.8871 -3.2906 5.2662 26 6 2.0710 -0.7033 3.7470 27 6 1.5302 0.0009 2.4987 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 2.2490 -1.6319 -1.1525 32 1 3.0601 -0.4630 -5.4351 33 1 3.1300 -0.7207 1.2494 34 1 0.4405 -2.1651 1.2742 35 1 1.8741 -2.6712 0.3473 36 1 3.1563 -2.9724 2.4141 37 1 1.6351 -3.8903 2.5413 38 1 2.5626 -4.8947 4.0516 39 1 1.7701 -7.2183 3.8772 40 1 -2.0993 -6.1091 4.8799 41 1 3.1560 -0.6040 3.7814 42 1 1.6344 -0.2532 4.6386 43 1 1.8740 1.0353 2.4868 44 1 0.4404 -0.0201 2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713681645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:32 Heat of formation + Delta-G solvation = 14.027944 kcal Electronic energy + Delta-G solvation = -27379.746483 eV Core-core repulsion = 23551.465637 eV Total energy + Delta-G solvation = -3828.280845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26946 -39.85804 -38.22473 -36.99320 -35.68652 -33.64951 -32.73994 -31.61632 -31.14649 -30.87985 -28.76614 -26.16782 -24.83520 -24.22891 -23.45827 -23.23851 -21.62319 -20.20400 -19.00854 -18.08458 -17.59976 -17.27786 -16.88864 -16.39431 -15.55044 -15.36830 -14.89164 -14.78640 -14.55883 -14.49777 -14.18162 -14.09183 -13.54561 -13.29404 -13.24657 -12.78432 -12.57021 -12.48051 -12.40141 -12.15416 -11.78383 -11.60765 -11.55729 -11.38829 -10.97387 -10.77288 -10.66588 -10.54294 -10.41866 -10.23469 -10.15899 -9.94084 -9.74132 -9.59680 -9.44345 -8.98671 -8.85639 -7.30576 -5.80162 -3.15478 0.24468 0.39307 1.58987 2.25150 2.61449 3.13327 3.30065 3.33422 3.40410 3.84727 3.88418 4.16131 4.28489 4.54425 4.60884 4.63046 4.79878 4.86937 4.93265 5.01242 5.11296 5.17430 5.25497 5.30750 5.39768 5.46185 5.52674 5.60788 5.76741 5.78483 5.87497 5.91263 5.99444 6.06534 6.15729 6.25730 6.33996 6.47121 6.54736 6.76929 7.00786 7.05280 7.26988 7.75118 7.96943 8.39085 9.17758 9.90131 10.09901 11.38460 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.003324 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.865589 B = 8421.873501 C = 9259.317065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.183 3.817 3 H 0.056 0.944 4 N -0.748 5.748 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.094 4.094 14 C -0.131 4.131 15 C 0.095 3.905 16 N -0.595 5.595 17 C 0.559 3.441 18 O -0.517 6.517 19 C -0.069 4.069 20 C -0.135 4.135 21 C 0.102 3.898 22 N -0.458 5.458 23 C 0.115 3.885 24 C -0.053 4.053 25 Cl -0.030 7.030 26 C 0.113 3.887 27 C -0.128 4.128 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.359 0.641 32 H 0.259 0.741 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 -10.727 21.507 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.113 4.113 14 C -0.169 4.169 15 C -0.027 4.027 16 N -0.327 5.327 17 C 0.345 3.655 18 O -0.393 6.393 19 C -0.080 4.080 20 C -0.155 4.155 21 C -0.054 4.054 22 N -0.167 5.167 23 C -0.043 4.043 24 C -0.083 4.083 25 Cl -0.001 7.001 26 C -0.008 4.008 27 C -0.167 4.167 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.169 0.831 39 H 0.188 0.812 40 H 0.189 0.811 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.280 -10.938 21.820 24.780 hybrid contribution 0.544 -0.392 -0.226 0.708 sum -3.736 -11.330 21.594 24.670 Atomic orbital electron populations 1.22504 0.99052 1.00825 1.00372 1.20160 0.91949 0.95498 0.84970 0.92633 1.42839 1.79751 1.09435 1.07192 1.19085 1.36769 0.95633 0.85630 0.89242 1.24665 1.01572 0.97375 0.95577 1.69696 1.52781 1.35529 1.00253 0.86592 0.78162 0.87066 0.76928 1.21123 1.21737 1.20432 1.21449 1.00527 0.94254 0.95091 1.22006 1.01707 0.96514 0.96662 1.22138 1.00678 0.95387 0.84484 1.48033 1.56063 1.11462 1.17176 1.18003 0.78275 0.85484 0.83762 1.90823 1.55482 1.64124 1.28881 1.20303 0.93020 0.95498 0.99226 1.22431 1.01045 0.93145 0.98878 1.22904 0.92462 0.95205 0.94830 1.67723 1.02811 1.36213 1.09909 1.22862 1.00281 0.86226 0.94917 1.22175 0.90827 0.92674 1.02630 1.98430 1.55824 1.55220 1.90590 1.21725 1.00142 0.79041 0.99914 1.22019 1.01758 0.99558 0.93363 0.94039 0.93530 0.92582 0.80698 0.93074 0.90789 0.90916 0.90271 0.90578 0.89747 0.83063 0.81186 0.81092 0.91073 0.88929 0.90218 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 8.79 37.16 0.33 -2.46 16 2 C 0.18 3.23 2.72 -67.93 -0.18 3.04 16 3 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.75 -16.57 4.85 -53.42 -0.26 -16.83 16 5 C -0.24 -6.57 10.41 -15.06 -0.16 -6.72 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 9 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 13 C -0.09 -1.27 2.14 -90.57 -0.19 -1.47 16 14 C -0.13 -1.65 4.81 -26.61 -0.13 -1.78 16 15 C 0.10 0.95 5.56 -3.71 -0.02 0.93 16 16 N -0.59 -6.54 2.97 -173.79 -0.52 -7.06 16 17 C 0.56 6.86 6.74 -12.22 -0.08 6.77 16 18 O -0.52 -7.81 15.65 5.34 0.08 -7.72 16 19 C -0.07 -0.72 4.93 -104.62 -0.52 -1.24 16 20 C -0.13 -1.06 7.54 -39.03 -0.29 -1.35 16 21 C 0.10 0.76 11.17 -17.60 -0.20 0.56 16 22 N -0.46 -4.21 10.33 -13.27 -0.14 -4.35 16 23 C 0.12 1.03 10.99 -17.54 -0.19 0.84 16 24 C -0.05 -0.55 6.37 -38.91 -0.25 -0.80 16 25 Cl -0.03 -0.33 27.54 -51.86 -1.43 -1.76 16 26 C 0.11 1.21 6.42 -3.71 -0.02 1.19 16 27 C -0.13 -1.46 4.97 -26.61 -0.13 -1.60 16 28 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 29 H 0.05 0.76 6.46 -51.93 -0.34 0.42 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.36 7.73 3.90 -40.82 -0.16 7.57 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 35 H 0.08 1.11 6.46 -51.93 -0.34 0.77 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.74 4.69 -51.93 -0.24 0.50 16 38 H 0.15 0.86 7.36 -52.48 -0.39 0.48 16 39 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.09 1.05 7.03 -51.93 -0.37 0.68 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -33.05 359.50 -8.73 -41.78 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.81 Total: 6.06 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.14 Total: -4.06 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.14 Total: -56.34 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.43 Total: -1.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.05 -8.73 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713681645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.806 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds