Wall clock time and date at job start Tue Mar 31 2020 20:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47316 * 2 1 4 4 N 1.46498 * 109.47119 * 239.99547 * 2 1 3 5 5 C 1.36933 * 119.99868 * 85.00701 * 4 2 1 6 6 H 1.08001 * 120.00091 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00355 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00131 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47203 * 89.99968 * 9 7 5 11 11 H 1.48497 * 109.47127 * 210.00239 * 9 7 5 12 12 H 1.48502 * 109.46816 * 329.99917 * 9 7 5 13 13 C 1.53008 * 109.46921 * 119.99573 * 2 1 3 14 14 C 1.53040 * 109.45809 * 60.02666 * 13 2 1 15 15 C 1.53191 * 109.31150 * 178.59840 * 14 13 2 16 16 N 1.46929 * 108.76350 * 54.65604 * 15 14 13 17 17 C 1.34776 * 120.62821 * 126.35983 * 16 15 14 18 18 O 1.21528 * 120.00032 * 176.06233 * 17 16 15 19 19 C 1.48074 * 120.00238 * 356.06712 * 17 16 15 20 20 C 1.39874 * 120.93125 * 53.28652 * 19 17 16 21 21 C 1.38076 * 119.01706 * 179.97438 * 20 19 17 22 22 N 1.31847 * 120.94493 * 0.02562 * 21 20 19 23 23 C 1.31764 * 122.06718 * 359.97438 * 22 21 20 24 24 C 1.38350 * 120.86962 * 359.74115 * 23 22 21 25 25 Cl 1.73608 * 120.51762 * 180.26379 * 24 23 22 26 26 C 1.46926 * 118.74115 * 306.38707 * 16 15 14 27 27 C 1.53039 * 109.45765 * 299.97389 * 13 2 1 28 28 H 1.08998 * 109.47431 * 300.00190 * 1 2 3 29 29 H 1.08999 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46930 * 60.00457 * 1 2 3 31 31 H 0.97002 * 119.99974 * 264.99748 * 4 2 1 32 32 H 0.97001 * 120.00615 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.45842 * 180.02562 * 13 2 1 34 34 H 1.08995 * 109.50073 * 298.56794 * 14 13 2 35 35 H 1.09000 * 109.49699 * 58.66696 * 14 13 2 36 36 H 1.09005 * 109.59973 * 294.87249 * 15 14 13 37 37 H 1.08998 * 109.70656 * 174.50857 * 15 14 13 38 38 H 1.08005 * 120.48641 * 359.97438 * 20 19 17 39 39 H 1.08006 * 119.53037 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.56030 * 180.02562 * 23 22 21 41 41 H 1.09009 * 109.58274 * 293.82001 * 26 16 15 42 42 H 1.08997 * 109.70288 * 173.46750 * 26 16 15 43 43 H 1.09003 * 109.49839 * 301.33266 * 27 13 2 44 44 H 1.09002 * 109.50203 * 61.40449 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8921 1.0402 -2.4243 7 6 2.6114 -0.6622 -3.5091 8 7 2.7368 -0.0058 -4.6431 9 14 3.0555 -2.4747 -3.4252 10 1 1.8580 -3.2930 -3.7441 11 1 4.1305 -2.7669 -4.4071 12 1 3.5310 -2.8050 -2.0577 13 6 2.0400 -0.7212 1.2494 14 6 1.5302 -2.1642 1.2488 15 6 2.0713 -2.8931 2.4828 16 7 1.7084 -2.1256 3.6820 17 6 1.0550 -2.7151 4.7028 18 8 0.8236 -2.0891 5.7184 19 6 0.6190 -4.1254 4.5869 20 6 1.5261 -5.1323 4.2407 21 6 1.0768 -6.4344 4.1444 22 7 -0.1866 -6.7343 4.3728 23 6 -1.0747 -5.8181 4.7013 24 6 -0.7108 -4.4892 4.8262 25 17 -1.8871 -3.2906 5.2662 26 6 2.0710 -0.7033 3.7470 27 6 1.5302 0.0009 2.4987 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 2.2490 -1.6319 -1.1525 32 1 3.0601 -0.4630 -5.4351 33 1 3.1300 -0.7207 1.2494 34 1 0.4405 -2.1651 1.2742 35 1 1.8741 -2.6712 0.3473 36 1 3.1563 -2.9724 2.4141 37 1 1.6351 -3.8903 2.5413 38 1 2.5626 -4.8947 4.0516 39 1 1.7701 -7.2183 3.8772 40 1 -2.0993 -6.1091 4.8799 41 1 3.1560 -0.6040 3.7814 42 1 1.6344 -0.2532 4.6386 43 1 1.8740 1.0353 2.4868 44 1 0.4404 -0.0201 2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713681645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:31 Heat of formation + Delta-G solvation = -7.138651 kcal Electronic energy + Delta-G solvation = -27380.664335 eV Core-core repulsion = 23551.465637 eV Total energy + Delta-G solvation = -3829.198698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03425 -40.67450 -39.33355 -37.75703 -37.00676 -34.86404 -34.00922 -32.61118 -32.24176 -31.92599 -30.27511 -27.15658 -26.07851 -24.95725 -24.82199 -24.16420 -22.80409 -21.25021 -20.21137 -19.64374 -18.72153 -18.02149 -17.62264 -17.20245 -16.66848 -16.35078 -16.23967 -16.05422 -15.54044 -15.27063 -15.14428 -15.09794 -14.88845 -14.44129 -14.28051 -14.26521 -14.02716 -13.30097 -13.18920 -13.15501 -13.04869 -12.93709 -12.82167 -12.73266 -12.33418 -12.17217 -11.84405 -11.82490 -11.67206 -11.52201 -11.39639 -11.17507 -10.95053 -10.87318 -10.55747 -10.09941 -9.77785 -9.27864 -7.98970 -5.31749 -0.45319 -0.21305 0.86492 1.37241 1.38598 1.43248 1.50458 1.80485 2.49875 2.51448 3.08137 3.32584 3.34818 3.54081 3.55317 3.65764 3.73819 3.85372 3.97117 4.06772 4.13515 4.26268 4.33853 4.43569 4.50249 4.52072 4.61369 4.67501 4.72631 4.74174 4.81928 4.89058 4.94627 5.04678 5.07469 5.19323 5.28550 5.32372 5.37232 5.48065 5.66822 5.81682 6.17858 6.25365 6.66509 6.87700 7.12672 7.89248 8.09057 9.23066 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.003324 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.865589 B = 8421.873501 C = 9259.317065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.040 0.960 4 N -0.748 5.748 5 C -0.226 4.226 6 H 0.051 0.949 7 C -0.069 4.069 8 N -0.989 5.989 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.299 1.299 12 H -0.241 1.241 13 C -0.083 4.083 14 C -0.130 4.130 15 C 0.100 3.900 16 N -0.592 5.592 17 C 0.558 3.442 18 O -0.553 6.553 19 C -0.086 4.086 20 C -0.127 4.127 21 C 0.109 3.891 22 N -0.473 5.473 23 C 0.115 3.885 24 C -0.069 4.069 25 Cl -0.047 7.047 26 C 0.116 3.884 27 C -0.120 4.120 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.366 0.634 32 H 0.256 0.744 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.178 0.822 39 H 0.206 0.794 40 H 0.187 0.813 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -13.531 23.270 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.058 0.942 4 N -0.393 5.393 5 C -0.357 4.357 6 H 0.069 0.931 7 C -0.259 4.259 8 N -0.640 5.640 9 Si 0.779 3.221 10 H -0.208 1.208 11 H -0.226 1.226 12 H -0.165 1.165 13 C -0.102 4.102 14 C -0.168 4.168 15 C -0.021 4.021 16 N -0.324 5.324 17 C 0.345 3.655 18 O -0.432 6.432 19 C -0.098 4.098 20 C -0.147 4.147 21 C -0.047 4.047 22 N -0.182 5.182 23 C -0.043 4.043 24 C -0.099 4.099 25 Cl -0.018 7.018 26 C -0.006 4.006 27 C -0.159 4.159 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.195 0.805 39 H 0.222 0.778 40 H 0.204 0.796 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.190 -13.746 23.640 27.531 hybrid contribution 0.170 0.568 -0.761 0.965 sum -3.020 -13.178 22.878 26.575 Atomic orbital electron populations 1.22374 0.98191 1.01097 1.00157 1.20381 0.92422 0.95043 0.85295 0.94172 1.42809 1.79879 1.09716 1.06879 1.19029 1.34806 0.94328 0.87575 0.93053 1.25527 1.02565 1.02770 0.95087 1.69899 1.54981 1.37858 1.01236 0.85450 0.77583 0.80498 0.78547 1.20757 1.22602 1.16475 1.21304 1.00606 0.94807 0.93516 1.21965 1.01319 0.95788 0.97735 1.22206 1.01989 0.95431 0.82507 1.48090 1.55515 1.11572 1.17177 1.18272 0.77681 0.86111 0.83392 1.90803 1.56838 1.65199 1.30319 1.20339 0.93631 0.95115 1.00722 1.22723 1.01712 0.92589 0.97662 1.23508 0.92262 0.95909 0.93070 1.67806 1.03731 1.36311 1.10386 1.23105 1.01158 0.85632 0.94377 1.22308 0.90764 0.92897 1.03904 1.98419 1.56495 1.55971 1.90882 1.21711 1.01081 0.78917 0.98866 1.21935 1.01252 1.00006 0.92692 0.91404 0.92979 0.95639 0.79892 0.93525 0.90434 0.91678 0.91105 0.88328 0.88183 0.80497 0.77780 0.79574 0.89294 0.89656 0.89343 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 8.79 71.98 0.63 -4.55 16 2 C 0.18 6.05 2.72 44.99 0.12 6.17 16 3 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 4 N -0.75 -32.44 4.85 -322.94 -1.56 -34.01 16 5 C -0.23 -12.52 10.41 84.03 0.87 -11.65 16 6 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 7 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 8 N -0.99 -62.92 13.97 21.65 0.30 -62.62 16 9 Si 0.95 43.46 27.74 68.60 1.90 45.36 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 12 H -0.24 -9.39 6.52 99.48 0.65 -8.74 16 13 C -0.08 -2.05 2.14 -10.76 -0.02 -2.08 16 14 C -0.13 -2.87 4.81 30.67 0.15 -2.72 16 15 C 0.10 1.60 5.56 86.36 0.48 2.08 16 16 N -0.59 -11.32 2.97 -822.03 -2.44 -13.77 16 17 C 0.56 12.60 6.74 86.85 0.59 13.18 16 18 O -0.55 -16.19 15.65 -3.80 -0.06 -16.25 16 19 C -0.09 -1.61 4.93 -19.86 -0.10 -1.71 16 20 C -0.13 -1.50 7.54 22.63 0.17 -1.33 16 21 C 0.11 1.18 11.17 84.65 0.95 2.12 16 22 N -0.47 -7.36 10.33 -195.91 -2.02 -9.39 16 23 C 0.11 1.83 10.99 84.73 0.93 2.76 16 24 C -0.07 -1.33 6.37 22.70 0.14 -1.18 16 25 Cl -0.05 -1.01 27.54 -2.72 -0.07 -1.08 16 26 C 0.12 2.18 6.42 86.36 0.55 2.74 16 27 C -0.12 -2.48 4.97 30.67 0.15 -2.33 16 28 H 0.07 1.84 6.46 -2.39 -0.02 1.83 16 29 H 0.05 1.63 6.46 -2.39 -0.02 1.62 16 30 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.37 14.84 3.90 -92.71 -0.36 14.48 16 32 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.55 6.51 -2.39 -0.02 1.53 16 35 H 0.07 1.72 6.46 -2.39 -0.02 1.70 16 36 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 1.33 4.69 -2.39 -0.01 1.32 16 38 H 0.18 1.12 7.36 -2.91 -0.02 1.10 16 39 H 0.21 0.70 8.06 -2.91 -0.02 0.68 16 40 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.09 1.80 7.03 -2.39 -0.02 1.78 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.45 6.51 -2.39 -0.02 1.44 16 Total: -1.00 -74.34 359.50 2.74 -71.60 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.62 Total: 22.12 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.09 Total: -1.97 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.73 Total: -119.78 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.06 Total: -16.25 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.90 Total: 45.36 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -74.34 2.74 -71.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713681645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.464 kcal (2) G-P(sol) polarization free energy of solvation -74.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds