Wall clock time and date at job start Tue Mar 31 2020 21:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47019 * 2 1 4 4 N 1.46498 * 109.46831 * 119.99687 * 2 1 3 5 5 C 1.36942 * 120.00091 * 274.99867 * 4 2 1 6 6 H 1.07999 * 120.00161 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47166 * 89.99720 * 9 7 5 11 11 H 1.48502 * 109.47381 * 210.00275 * 9 7 5 12 12 H 1.48506 * 109.46909 * 329.99884 * 9 7 5 13 13 C 1.52991 * 109.47320 * 239.99689 * 2 1 3 14 14 H 1.09002 * 109.52477 * 299.92295 * 13 2 1 15 15 C 1.53040 * 109.49684 * 59.99887 * 13 2 1 16 16 C 1.53044 * 109.52793 * 181.32527 * 15 13 2 17 17 C 1.53194 * 109.31258 * 298.61572 * 16 15 13 18 18 N 1.46930 * 108.76323 * 54.65750 * 17 16 15 19 19 C 1.34771 * 120.63485 * 126.40765 * 18 17 16 20 20 O 1.21524 * 119.99946 * 352.03919 * 19 18 17 21 21 C 1.48109 * 120.00401 * 172.04512 * 19 18 17 22 22 C 1.39344 * 119.70955 * 170.47885 * 21 19 18 23 23 C 1.38522 * 119.08125 * 179.97438 * 22 21 19 24 24 C 1.38776 * 118.47371 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.33631 * 180.02562 * 24 23 22 26 26 C 1.38722 * 119.32488 * 359.97438 * 24 23 22 27 27 N 1.31491 * 120.87927 * 359.74046 * 26 24 23 28 28 C 1.46930 * 118.73848 * 306.38021 * 18 17 16 29 29 H 1.08998 * 109.47021 * 59.99682 * 1 2 3 30 30 H 1.08990 * 109.47559 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47220 * 300.00772 * 1 2 3 32 32 H 0.97006 * 120.00054 * 95.00031 * 4 2 1 33 33 H 0.96999 * 119.99837 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46061 * 301.33888 * 15 13 2 35 35 H 1.09001 * 109.46118 * 61.31647 * 15 13 2 36 36 H 1.09003 * 109.49868 * 58.58234 * 16 15 13 37 37 H 1.08995 * 109.49750 * 178.68148 * 16 15 13 38 38 H 1.09000 * 109.59994 * 294.87191 * 17 16 15 39 39 H 1.09000 * 109.58388 * 174.43225 * 17 16 15 40 40 H 1.08006 * 120.46202 * 359.95242 * 22 21 19 41 41 H 1.07994 * 120.76494 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.56218 * 180.02562 * 26 24 23 43 43 H 1.09003 * 109.58614 * 293.82632 * 28 18 17 44 44 H 1.08997 * 109.58976 * 173.39672 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4244 7 6 2.6122 -0.6616 3.5091 8 7 2.9262 -1.9384 3.4498 9 14 2.7900 0.2702 5.1183 10 1 1.5223 0.1780 5.8863 11 1 3.8950 -0.3224 5.9140 12 1 3.0939 1.6957 4.8340 13 6 2.0400 -0.7213 -1.2491 14 1 1.6783 -1.7495 -1.2493 15 6 1.5302 -0.0004 -2.4991 16 6 2.0126 -0.7403 -3.7489 17 6 3.5442 -0.7371 -3.7801 18 7 4.0438 -1.2973 -2.5170 19 6 4.9187 -2.3224 -2.5188 20 8 5.1911 -2.8869 -3.5600 21 6 5.5482 -2.7612 -1.2520 22 6 6.2930 -3.9384 -1.2224 23 6 6.8765 -4.3363 -0.0307 24 6 6.6943 -3.5421 1.0927 25 17 7.4043 -3.9946 2.6108 26 6 5.9400 -2.3825 0.9899 27 7 5.4024 -2.0265 -0.1561 28 6 3.5720 -0.7182 -1.2518 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 2.2490 -1.6318 1.1527 33 1 3.2501 -2.3954 4.2417 34 1 0.4405 0.0203 -2.4873 35 1 1.9128 1.0202 -2.5112 36 1 1.6512 -1.7684 -3.7253 37 1 1.6298 -0.2400 -4.6384 38 1 3.9055 0.2849 -3.8948 39 1 3.8940 -1.3463 -4.6136 40 1 6.4135 -4.5328 -2.1162 41 1 7.4590 -5.2441 0.0232 42 1 5.7961 -1.7614 1.8616 43 1 3.9354 0.3054 -1.1603 44 1 3.9400 -1.3148 -0.4171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715320304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:52 Heat of formation + Delta-G solvation = 18.753961 kcal Electronic energy + Delta-G solvation = -28017.752656 eV Core-core repulsion = 24189.676746 eV Total energy + Delta-G solvation = -3828.075910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.83473 -39.26422 -37.75202 -36.57331 -35.25341 -33.28411 -32.48096 -31.90253 -30.93073 -29.69864 -28.11995 -25.88060 -24.21035 -23.74438 -23.57373 -22.74782 -21.14379 -19.60703 -19.42346 -17.41553 -17.15891 -16.95722 -16.36296 -15.68505 -15.31088 -14.89973 -14.69450 -14.46404 -14.09104 -13.81451 -13.71148 -13.56917 -13.45915 -13.01290 -12.75151 -12.60527 -12.45126 -12.17228 -11.95268 -11.87933 -11.30265 -11.24622 -11.04799 -10.89210 -10.87171 -10.69739 -10.48911 -10.39649 -10.16860 -10.13777 -9.87425 -9.75480 -9.57112 -8.95085 -8.91004 -8.68209 -8.35483 -6.91106 -5.73169 -3.00849 0.54401 1.15752 2.03097 2.75539 3.08431 3.43471 3.50130 3.50789 3.83134 4.20212 4.59675 4.63590 4.73369 4.86396 4.95941 5.05643 5.07035 5.15109 5.35153 5.48514 5.59700 5.67799 5.72005 5.78846 5.81815 5.83132 5.92844 5.94887 6.08236 6.10028 6.23392 6.26608 6.29224 6.38723 6.48296 6.54141 6.66969 6.74143 6.94168 7.14440 7.15951 7.53792 7.73472 7.74799 8.24137 8.44407 9.56334 10.13753 10.49601 11.48559 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.007175 B = 0.006610 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3901.609752 B = 4234.734085 C = 7825.007732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.720 5.720 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.010 4.010 8 N -0.929 5.929 9 Si 0.898 3.102 10 H -0.293 1.293 11 H -0.292 1.292 12 H -0.284 1.284 13 C -0.106 4.106 14 H 0.065 0.935 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.108 3.892 18 N -0.587 5.587 19 C 0.573 3.427 20 O -0.547 6.547 21 C 0.077 3.923 22 C -0.109 4.109 23 C -0.076 4.076 24 C -0.068 4.068 25 Cl -0.049 7.049 26 C 0.139 3.861 27 N -0.417 5.417 28 C 0.082 3.918 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.382 0.618 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.181 0.819 43 H 0.063 0.937 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 -1.728 -10.826 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.071 3.929 3 H 0.065 0.935 4 N -0.361 5.361 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.206 4.206 8 N -0.578 5.578 9 Si 0.729 3.271 10 H -0.221 1.221 11 H -0.219 1.219 12 H -0.210 1.210 13 C -0.126 4.126 14 H 0.083 0.917 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.014 4.014 18 N -0.318 5.318 19 C 0.360 3.640 20 O -0.426 6.426 21 C -0.061 4.061 22 C -0.129 4.129 23 C -0.102 4.102 24 C -0.097 4.097 25 Cl -0.020 7.020 26 C -0.020 4.020 27 N -0.129 5.129 28 C -0.039 4.039 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.216 0.784 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.198 0.802 43 H 0.081 0.919 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.311 -1.152 -11.185 12.435 hybrid contribution 0.433 -0.570 1.324 1.505 sum 5.744 -1.722 -9.861 11.541 Atomic orbital electron populations 1.22480 0.99453 1.00709 0.99837 1.20153 0.91622 0.95311 0.85812 0.93483 1.42388 1.78008 1.10563 1.05188 1.19196 1.35864 0.93744 0.87327 0.91448 1.24623 1.02556 0.95904 0.97523 1.69653 1.51247 1.08370 1.28530 0.86338 0.77229 0.78906 0.84597 1.22061 1.21878 1.20965 1.21814 0.95474 1.00082 0.95199 0.91669 1.21656 1.00876 0.99076 0.93826 1.21898 0.94972 1.01440 0.98670 1.21655 0.94303 0.98752 0.86713 1.48093 1.42293 1.32676 1.08704 1.17841 0.79329 0.79816 0.87017 1.90733 1.63974 1.55565 1.32299 1.21310 0.97950 0.93591 0.93206 1.21976 0.95940 0.96246 0.98787 1.21493 0.98482 0.99464 0.90779 1.22382 1.00525 0.97994 0.88777 1.98393 1.81913 1.92058 1.29630 1.23232 0.89408 0.92912 0.96488 1.67934 1.15996 1.30546 0.98398 1.23145 0.93393 1.01024 0.86335 0.94321 0.93721 0.92951 0.78405 0.93724 0.91414 0.91948 0.91702 0.91100 0.91482 0.89391 0.83011 0.83372 0.80200 0.91903 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 2 C 0.18 3.39 2.47 -67.93 -0.17 3.22 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -16.60 4.52 -53.43 -0.24 -16.84 16 5 C -0.23 -5.92 9.93 -15.06 -0.15 -6.07 16 6 H 0.07 1.73 7.83 -52.49 -0.41 1.31 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 8 N -0.93 -25.55 13.06 55.49 0.72 -24.83 16 9 Si 0.90 21.39 29.55 -169.99 -5.02 16.36 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C -0.11 -1.70 1.97 -90.50 -0.18 -1.88 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.51 4.85 -26.69 -0.13 -1.64 16 16 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 17 C 0.11 1.40 6.44 -3.71 -0.02 1.38 16 18 N -0.59 -9.13 2.97 -173.78 -0.52 -9.64 16 19 C 0.57 9.55 7.65 -12.21 -0.09 9.46 16 20 O -0.55 -9.79 15.79 5.34 0.08 -9.71 16 21 C 0.08 1.23 6.57 -83.01 -0.55 0.68 16 22 C -0.11 -1.45 9.63 -39.07 -0.38 -1.83 16 23 C -0.08 -0.92 9.97 -39.28 -0.39 -1.32 16 24 C -0.07 -0.96 6.35 -39.20 -0.25 -1.21 16 25 Cl -0.05 -0.66 28.99 -51.86 -1.50 -2.16 16 26 C 0.14 2.28 10.98 -17.52 -0.19 2.09 16 27 N -0.42 -7.08 6.14 -9.77 -0.06 -7.14 16 28 C 0.08 1.37 4.91 -3.71 -0.02 1.35 16 29 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.38 9.52 7.62 -40.82 -0.31 9.20 16 33 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 40 H 0.15 1.80 7.67 -52.48 -0.40 1.39 16 41 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.18 3.19 8.06 -52.49 -0.42 2.77 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.16 2.99 3.56 -83.11 -0.30 2.70 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -28.21 368.90 -9.64 -37.85 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.23 Total: 10.93 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.43 Total: -0.38 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.09 Total: -58.45 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.21 -9.64 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.604 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds