Wall clock time and date at job start Tue Mar 31 2020 21:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47019 * 2 1 4 4 N 1.46498 * 109.46831 * 119.99687 * 2 1 3 5 5 C 1.36942 * 120.00091 * 274.99867 * 4 2 1 6 6 H 1.07999 * 120.00161 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47166 * 89.99720 * 9 7 5 11 11 H 1.48502 * 109.47381 * 210.00275 * 9 7 5 12 12 H 1.48506 * 109.46909 * 329.99884 * 9 7 5 13 13 C 1.52991 * 109.47320 * 239.99689 * 2 1 3 14 14 H 1.09002 * 109.52477 * 299.92295 * 13 2 1 15 15 C 1.53040 * 109.49684 * 59.99887 * 13 2 1 16 16 C 1.53044 * 109.52793 * 181.32527 * 15 13 2 17 17 C 1.53194 * 109.31258 * 298.61572 * 16 15 13 18 18 N 1.46930 * 108.76323 * 54.65750 * 17 16 15 19 19 C 1.34771 * 120.63485 * 126.40765 * 18 17 16 20 20 O 1.21524 * 119.99946 * 352.03919 * 19 18 17 21 21 C 1.48109 * 120.00401 * 172.04512 * 19 18 17 22 22 C 1.39344 * 119.70955 * 170.47885 * 21 19 18 23 23 C 1.38522 * 119.08125 * 179.97438 * 22 21 19 24 24 C 1.38776 * 118.47371 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.33631 * 180.02562 * 24 23 22 26 26 C 1.38722 * 119.32488 * 359.97438 * 24 23 22 27 27 N 1.31491 * 120.87927 * 359.74046 * 26 24 23 28 28 C 1.46930 * 118.73848 * 306.38021 * 18 17 16 29 29 H 1.08998 * 109.47021 * 59.99682 * 1 2 3 30 30 H 1.08990 * 109.47559 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47220 * 300.00772 * 1 2 3 32 32 H 0.97006 * 120.00054 * 95.00031 * 4 2 1 33 33 H 0.96999 * 119.99837 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46061 * 301.33888 * 15 13 2 35 35 H 1.09001 * 109.46118 * 61.31647 * 15 13 2 36 36 H 1.09003 * 109.49868 * 58.58234 * 16 15 13 37 37 H 1.08995 * 109.49750 * 178.68148 * 16 15 13 38 38 H 1.09000 * 109.59994 * 294.87191 * 17 16 15 39 39 H 1.09000 * 109.58388 * 174.43225 * 17 16 15 40 40 H 1.08006 * 120.46202 * 359.95242 * 22 21 19 41 41 H 1.07994 * 120.76494 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.56218 * 180.02562 * 26 24 23 43 43 H 1.09003 * 109.58614 * 293.82632 * 28 18 17 44 44 H 1.08997 * 109.58976 * 173.39672 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4244 7 6 2.6122 -0.6616 3.5091 8 7 2.9262 -1.9384 3.4498 9 14 2.7900 0.2702 5.1183 10 1 1.5223 0.1780 5.8863 11 1 3.8950 -0.3224 5.9140 12 1 3.0939 1.6957 4.8340 13 6 2.0400 -0.7213 -1.2491 14 1 1.6783 -1.7495 -1.2493 15 6 1.5302 -0.0004 -2.4991 16 6 2.0126 -0.7403 -3.7489 17 6 3.5442 -0.7371 -3.7801 18 7 4.0438 -1.2973 -2.5170 19 6 4.9187 -2.3224 -2.5188 20 8 5.1911 -2.8869 -3.5600 21 6 5.5482 -2.7612 -1.2520 22 6 6.2930 -3.9384 -1.2224 23 6 6.8765 -4.3363 -0.0307 24 6 6.6943 -3.5421 1.0927 25 17 7.4043 -3.9946 2.6108 26 6 5.9400 -2.3825 0.9899 27 7 5.4024 -2.0265 -0.1561 28 6 3.5720 -0.7182 -1.2518 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 2.2490 -1.6318 1.1527 33 1 3.2501 -2.3954 4.2417 34 1 0.4405 0.0203 -2.4873 35 1 1.9128 1.0202 -2.5112 36 1 1.6512 -1.7684 -3.7253 37 1 1.6298 -0.2400 -4.6384 38 1 3.9055 0.2849 -3.8948 39 1 3.8940 -1.3463 -4.6136 40 1 6.4135 -4.5328 -2.1162 41 1 7.4590 -5.2441 0.0232 42 1 5.7961 -1.7614 1.8616 43 1 3.9354 0.3054 -1.1603 44 1 3.9400 -1.3148 -0.4171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715320304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:49 Heat of formation + Delta-G solvation = 3.960130 kcal Electronic energy + Delta-G solvation = -28018.394165 eV Core-core repulsion = 24189.676746 eV Total energy + Delta-G solvation = -3828.717418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.03928 -40.46353 -39.08607 -37.69359 -36.78041 -34.62974 -33.95734 -33.15421 -32.17121 -31.20996 -29.68069 -27.09510 -25.86510 -24.95116 -24.83320 -24.10384 -22.39108 -21.06508 -20.60690 -19.02438 -18.54479 -18.25330 -17.52404 -16.91053 -16.67787 -16.52361 -15.92271 -15.72063 -15.48869 -15.29465 -15.01405 -14.94938 -14.59545 -14.34431 -14.08373 -13.88470 -13.80875 -13.44927 -13.27827 -13.04775 -12.92443 -12.75704 -12.49241 -12.43652 -12.24098 -12.08478 -11.94633 -11.75066 -11.65384 -11.42449 -11.39709 -11.13334 -10.98018 -10.83484 -10.12451 -9.92684 -9.58151 -8.82743 -7.77368 -5.03475 -0.62362 0.04536 0.90529 1.51120 1.51668 1.53978 1.59919 1.90760 2.63591 2.65239 2.97088 3.49242 3.54808 3.63876 3.76085 3.80703 3.93568 3.97948 4.05595 4.14289 4.28524 4.37588 4.53287 4.60037 4.63780 4.65811 4.76047 4.82682 4.85809 4.91901 4.99064 5.04886 5.10075 5.11235 5.19558 5.29262 5.35640 5.44384 5.54254 5.66052 5.70241 5.85151 6.27704 6.42223 6.53167 6.99519 7.50067 8.24697 8.50005 9.43985 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.007175 B = 0.006610 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3901.609752 B = 4234.734085 C = 7825.007732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 H 0.044 0.956 4 N -0.727 5.727 5 C -0.228 4.228 6 H 0.068 0.932 7 C -0.059 4.059 8 N -0.951 5.951 9 Si 0.950 3.050 10 H -0.298 1.298 11 H -0.298 1.298 12 H -0.276 1.276 13 C -0.095 4.095 14 H 0.048 0.952 15 C -0.111 4.111 16 C -0.123 4.123 17 C 0.102 3.898 18 N -0.586 5.586 19 C 0.568 3.432 20 O -0.564 6.564 21 C 0.054 3.946 22 C -0.099 4.099 23 C -0.060 4.060 24 C -0.067 4.067 25 Cl -0.042 7.042 26 C 0.118 3.882 27 N -0.434 5.434 28 C 0.086 3.914 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.371 0.629 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.172 0.828 41 H 0.188 0.812 42 H 0.157 0.843 43 H 0.056 0.944 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -1.540 -12.429 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.062 0.938 4 N -0.367 5.367 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.252 4.252 8 N -0.602 5.602 9 Si 0.782 3.218 10 H -0.226 1.226 11 H -0.225 1.225 12 H -0.202 1.202 13 C -0.115 4.115 14 H 0.066 0.934 15 C -0.149 4.149 16 C -0.161 4.161 17 C -0.019 4.019 18 N -0.316 5.316 19 C 0.355 3.645 20 O -0.444 6.444 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.096 4.096 25 Cl -0.013 7.013 26 C -0.041 4.041 27 N -0.146 5.146 28 C -0.036 4.036 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.202 0.798 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.189 0.811 41 H 0.205 0.795 42 H 0.175 0.825 43 H 0.075 0.925 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.172 -0.920 -12.817 13.852 hybrid contribution 0.472 -0.611 1.787 1.946 sum 5.644 -1.531 -11.031 12.485 Atomic orbital electron populations 1.22341 0.97995 1.00434 1.00714 1.20354 0.92492 0.94960 0.85337 0.93755 1.42496 1.78212 1.10038 1.05917 1.19440 1.34452 0.93790 0.88298 0.91450 1.25182 1.03468 0.96662 0.99936 1.69779 1.52498 1.09363 1.28571 0.85493 0.76454 0.78258 0.81621 1.22588 1.22451 1.20161 1.21659 0.94989 0.99192 0.95643 0.93352 1.21633 1.01561 0.99231 0.92443 1.21859 0.93820 1.01104 0.99305 1.21894 0.95296 0.99408 0.85330 1.48148 1.41945 1.32302 1.09204 1.18003 0.79436 0.79946 0.87077 1.90710 1.64739 1.56197 1.32747 1.21448 0.99234 0.94838 0.92766 1.22234 0.94609 0.95241 0.99888 1.21866 0.97530 0.99925 0.89253 1.22400 1.00005 0.97487 0.89731 1.98393 1.81649 1.91847 1.29426 1.22955 0.91147 0.94090 0.95942 1.67829 1.16462 1.31520 0.98792 1.22933 0.93763 1.00261 0.86617 0.90752 0.94533 0.94711 0.79756 0.94466 0.90163 0.90867 0.92695 0.87790 0.89845 0.89520 0.81060 0.79506 0.82546 0.92533 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 9.14 71.98 0.66 -4.55 16 2 C 0.18 6.56 2.47 44.99 0.11 6.67 16 3 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 4 N -0.73 -34.13 4.52 -322.95 -1.46 -35.60 16 5 C -0.23 -11.88 9.93 84.03 0.83 -11.05 16 6 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 7 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 8 N -0.95 -53.73 13.06 21.65 0.28 -53.45 16 9 Si 0.95 44.64 29.55 68.60 2.03 46.67 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 C -0.09 -2.99 1.97 -10.72 -0.02 -3.01 16 14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.11 -2.58 4.85 30.62 0.15 -2.43 16 16 C -0.12 -2.54 6.08 30.67 0.19 -2.35 16 17 C 0.10 2.45 6.44 86.36 0.56 3.00 16 18 N -0.59 -17.92 2.97 -821.99 -2.44 -20.36 16 19 C 0.57 18.80 7.65 86.87 0.66 19.46 16 20 O -0.56 -19.76 15.79 -3.79 -0.06 -19.82 16 21 C 0.05 1.74 6.57 41.90 0.28 2.01 16 22 C -0.10 -2.52 9.63 22.60 0.22 -2.31 16 23 C -0.06 -1.35 9.97 22.47 0.22 -1.13 16 24 C -0.07 -1.89 6.35 22.51 0.14 -1.74 16 25 Cl -0.04 -1.11 28.99 -2.72 -0.08 -1.19 16 26 C 0.12 4.05 10.98 84.86 0.93 4.98 16 27 N -0.43 -15.25 6.14 -184.82 -1.14 -16.38 16 28 C 0.09 2.89 4.91 86.36 0.42 3.31 16 29 H 0.07 1.95 6.40 -2.39 -0.02 1.94 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.37 19.06 7.62 -92.70 -0.71 18.35 16 33 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.08 1.70 6.36 -2.39 -0.02 1.68 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 2.14 7.00 -2.39 -0.02 2.12 16 40 H 0.17 3.68 7.67 -2.91 -0.02 3.66 16 41 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.16 6.01 8.06 -2.91 -0.02 5.98 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.14 5.50 3.56 -63.95 -0.23 5.27 16 Total: -1.00 -61.73 368.90 3.06 -58.67 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.10 Total: 33.33 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.82 Total: 8.14 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -4.76 Total: -125.79 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.06 Total: -19.82 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -61.73 3.06 -58.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.630 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds