Wall clock time and date at job start Tue Mar 31 2020 21:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46852 * 2 1 4 4 N 1.46503 * 109.46902 * 240.00373 * 2 1 3 5 5 C 1.36938 * 120.00190 * 85.00333 * 4 2 1 6 6 H 1.07997 * 119.99638 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99848 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99539 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47086 * 89.99977 * 9 7 5 11 11 H 1.48499 * 109.46641 * 209.99966 * 9 7 5 12 12 H 1.48499 * 109.47083 * 329.99816 * 9 7 5 13 13 C 1.52998 * 109.47227 * 120.00369 * 2 1 3 14 14 H 1.09002 * 109.49730 * 60.06033 * 13 2 1 15 15 C 1.53048 * 109.49610 * 300.00396 * 13 2 1 16 16 C 1.53041 * 109.53770 * 178.68357 * 15 13 2 17 17 C 1.53198 * 109.31077 * 61.36002 * 16 15 13 18 18 N 1.46922 * 108.77676 * 305.36579 * 17 16 15 19 19 C 1.34778 * 120.62954 * 233.58546 * 18 17 16 20 20 O 1.21521 * 120.00075 * 180.17553 * 19 18 17 21 21 C 1.48113 * 119.99785 * 0.17794 * 19 18 17 22 22 C 1.39348 * 119.70231 * 158.05553 * 21 19 18 23 23 C 1.38529 * 119.07081 * 180.02562 * 22 21 19 24 24 C 1.38765 * 118.48218 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.33919 * 179.72546 * 24 23 22 26 26 C 1.38719 * 119.32157 * 0.02562 * 24 23 22 27 27 N 1.31486 * 120.88325 * 359.97347 * 26 24 23 28 28 C 1.46923 * 118.73992 * 53.86394 * 18 17 16 29 29 H 1.08995 * 109.47216 * 299.99995 * 1 2 3 30 30 H 1.09000 * 109.47191 * 60.00069 * 1 2 3 31 31 H 1.09008 * 109.46901 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99422 * 264.99614 * 4 2 1 33 33 H 0.97000 * 120.00379 * 180.02562 * 8 7 5 34 34 H 1.08991 * 109.46260 * 58.65856 * 15 13 2 35 35 H 1.09001 * 109.44196 * 298.69860 * 15 13 2 36 36 H 1.08992 * 109.49566 * 301.41379 * 16 15 13 37 37 H 1.09000 * 109.49324 * 181.30822 * 16 15 13 38 38 H 1.08999 * 109.58293 * 185.57730 * 17 16 15 39 39 H 1.09002 * 109.69890 * 65.22160 * 17 16 15 40 40 H 1.07993 * 120.46764 * 0.02562 * 22 21 19 41 41 H 1.08004 * 120.75636 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.56285 * 179.97438 * 26 24 23 43 43 H 1.08998 * 109.59128 * 65.92273 * 28 18 17 44 44 H 1.09005 * 109.58946 * 186.35175 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1492 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6123 -0.6616 -3.5091 8 7 2.9262 -1.9384 -3.4498 9 14 2.7901 0.2703 -5.1183 10 1 4.1519 0.8563 -5.2031 11 1 2.5804 -0.6614 -6.2555 12 1 1.7793 1.3566 -5.1755 13 6 2.0401 -0.7213 1.2492 14 1 1.6779 -1.7494 1.2490 15 6 1.5302 -0.0004 2.4992 16 6 2.0126 -0.7401 3.7492 17 6 3.5442 -0.7371 3.7801 18 7 4.0438 -1.2971 2.5170 19 6 4.9188 -2.3223 2.5189 20 8 5.3271 -2.7746 1.4675 21 6 5.3827 -2.8976 3.8025 22 6 5.8935 -4.1937 3.8338 23 6 6.3231 -4.7189 5.0415 24 6 6.2275 -3.9287 6.1782 25 17 6.7451 -4.5411 7.7179 26 6 5.7083 -2.6467 6.0726 27 7 5.3081 -2.1740 4.9128 28 6 3.5763 -0.7144 1.2519 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 3.2502 -2.3955 -4.2417 34 1 0.4405 0.0203 2.4874 35 1 1.9126 1.0202 2.5109 36 1 1.6512 -1.7681 3.7257 37 1 1.6297 -0.2395 4.6385 38 1 3.8940 -1.3462 4.6136 39 1 3.9074 0.2841 3.8960 40 1 5.9537 -4.7805 2.9292 41 1 6.7241 -5.7202 5.0969 42 1 5.6318 -2.0285 6.9549 43 1 3.9399 0.3094 1.1647 44 1 3.9472 -1.3086 0.4167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715320305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:00 Heat of formation + Delta-G solvation = 17.875482 kcal Electronic energy + Delta-G solvation = -26987.505624 eV Core-core repulsion = 23159.391621 eV Total energy + Delta-G solvation = -3828.114003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.16937 -39.47863 -37.72296 -37.11425 -35.44208 -33.35321 -32.67131 -31.69956 -31.65903 -29.70415 -28.17770 -25.88636 -24.57130 -24.25511 -23.46073 -22.83938 -21.21900 -19.83381 -19.40905 -17.66087 -17.49290 -17.02839 -16.78049 -15.89507 -15.34560 -15.16318 -14.80725 -14.63464 -14.26351 -14.10259 -13.81342 -13.64577 -13.56397 -13.06065 -12.85746 -12.77120 -12.68325 -12.40856 -12.22411 -11.95486 -11.76800 -11.29517 -11.09100 -10.93643 -10.81225 -10.66886 -10.63023 -10.40382 -10.21884 -10.15364 -10.11874 -9.82333 -9.52206 -9.44673 -9.21924 -8.84894 -8.39210 -6.88011 -5.67884 -2.96970 0.11935 0.63173 1.46910 2.53045 2.97730 3.37556 3.48502 3.53214 3.55066 3.79843 4.17080 4.28452 4.41635 4.61683 4.64394 4.97628 5.08334 5.12719 5.22726 5.30673 5.35627 5.41622 5.51591 5.64272 5.75394 5.78248 5.86098 5.92503 5.98421 6.06991 6.14399 6.24525 6.28238 6.29110 6.47569 6.51836 6.58746 6.75709 6.80437 6.96179 7.13420 7.15069 7.54542 7.77078 8.20312 8.49784 9.60913 10.18911 10.53440 11.54387 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.002626 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.099977 B =10658.600447 C =11795.404858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.101 4.101 14 H 0.069 0.931 15 C -0.116 4.116 16 C -0.135 4.135 17 C 0.076 3.924 18 N -0.586 5.586 19 C 0.561 3.439 20 O -0.519 6.519 21 C 0.095 3.905 22 C -0.100 4.100 23 C -0.069 4.069 24 C -0.075 4.075 25 Cl -0.050 7.050 26 C 0.106 3.894 27 N -0.434 5.434 28 C 0.120 3.880 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.068 0.932 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -2.970 25.786 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.121 4.121 14 H 0.088 0.912 15 C -0.154 4.154 16 C -0.173 4.173 17 C -0.046 4.046 18 N -0.317 5.317 19 C 0.346 3.654 20 O -0.394 6.394 21 C -0.043 4.043 22 C -0.120 4.120 23 C -0.095 4.095 24 C -0.105 4.105 25 Cl -0.021 7.021 26 C -0.053 4.053 27 N -0.146 5.146 28 C -0.001 4.001 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.177 0.823 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.086 0.914 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.121 -2.296 25.094 25.533 hybrid contribution 0.448 -0.676 -0.689 1.064 sum 4.570 -2.972 24.405 25.006 Atomic orbital electron populations 1.22478 0.99322 1.00771 0.99866 1.20179 0.91819 0.95274 0.85790 0.93508 1.42453 1.78078 1.10738 1.05290 1.19192 1.36575 0.93765 0.87347 0.91305 1.24728 1.02268 0.95929 0.97958 1.69664 1.50690 1.08607 1.28800 0.86244 0.77728 0.78578 0.83957 1.21795 1.21891 1.20888 1.21827 0.94447 1.00478 0.95389 0.91237 1.21649 1.00896 0.99108 0.93727 1.21960 0.95792 1.01044 0.98503 1.22779 0.93628 1.00659 0.87557 1.48053 1.42646 1.32264 1.08741 1.17804 0.80231 0.80412 0.86974 1.90890 1.56869 1.60500 1.31162 1.21527 0.97581 0.92368 0.92821 1.22186 0.95424 0.95234 0.99188 1.21601 0.96857 1.00612 0.90434 1.22324 1.03045 0.96413 0.88670 1.98402 1.88963 1.87344 1.27407 1.22990 0.93940 0.91832 0.96565 1.67841 1.13705 1.34855 0.98168 1.21893 0.94051 0.99015 0.85142 0.94277 0.92902 0.93647 0.78205 0.93564 0.91385 0.91908 0.92088 0.91169 0.85089 0.91626 0.82279 0.82893 0.81033 0.91417 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.14 37.16 0.34 -2.61 16 2 C 0.18 3.52 2.47 -67.93 -0.17 3.35 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -18.13 4.53 -53.42 -0.24 -18.37 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 9 Si 0.90 22.82 29.55 -169.99 -5.02 17.79 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.10 -1.68 1.99 -90.27 -0.18 -1.86 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.48 4.85 -26.69 -0.13 -1.61 16 16 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 17 C 0.08 0.90 5.99 -3.71 -0.02 0.88 16 18 N -0.59 -8.95 2.97 -173.52 -0.51 -9.47 16 19 C 0.56 9.12 7.61 -12.21 -0.09 9.03 16 20 O -0.52 -10.50 15.94 5.35 0.09 -10.41 16 21 C 0.09 1.18 6.45 -83.01 -0.54 0.64 16 22 C -0.10 -1.03 9.62 -39.06 -0.38 -1.40 16 23 C -0.07 -0.53 9.97 -39.28 -0.39 -0.93 16 24 C -0.08 -0.57 6.35 -39.21 -0.25 -0.82 16 25 Cl -0.05 -0.33 28.99 -51.86 -1.50 -1.83 16 26 C 0.11 0.84 10.98 -17.52 -0.19 0.64 16 27 N -0.43 -4.55 6.37 -9.77 -0.06 -4.61 16 28 C 0.12 2.13 5.50 -3.49 -0.02 2.11 16 29 H 0.04 0.58 6.40 -51.93 -0.33 0.24 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.38 10.45 7.64 -40.82 -0.31 10.14 16 33 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.13 1.43 3.99 -78.81 -0.31 1.11 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.16 1.62 7.80 -52.49 -0.41 1.21 16 41 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.11 2.37 6.54 -51.93 -0.34 2.03 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -32.58 369.35 -9.62 -42.21 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.23 Total: 8.57 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.42 Total: -1.45 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.09 Total: -60.44 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.58 -9.62 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.081 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds