Wall clock time and date at job start Tue Mar 31 2020 21:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46852 * 2 1 4 4 N 1.46503 * 109.46902 * 240.00373 * 2 1 3 5 5 C 1.36938 * 120.00190 * 85.00333 * 4 2 1 6 6 H 1.07997 * 119.99638 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99848 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99539 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47086 * 89.99977 * 9 7 5 11 11 H 1.48499 * 109.46641 * 209.99966 * 9 7 5 12 12 H 1.48499 * 109.47083 * 329.99816 * 9 7 5 13 13 C 1.52998 * 109.47227 * 120.00369 * 2 1 3 14 14 H 1.09002 * 109.49730 * 60.06033 * 13 2 1 15 15 C 1.53048 * 109.49610 * 300.00396 * 13 2 1 16 16 C 1.53041 * 109.53770 * 178.68357 * 15 13 2 17 17 C 1.53198 * 109.31077 * 61.36002 * 16 15 13 18 18 N 1.46922 * 108.77676 * 305.36579 * 17 16 15 19 19 C 1.34778 * 120.62954 * 233.58546 * 18 17 16 20 20 O 1.21521 * 120.00075 * 180.17553 * 19 18 17 21 21 C 1.48113 * 119.99785 * 0.17794 * 19 18 17 22 22 C 1.39348 * 119.70231 * 158.05553 * 21 19 18 23 23 C 1.38529 * 119.07081 * 180.02562 * 22 21 19 24 24 C 1.38765 * 118.48218 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.33919 * 179.72546 * 24 23 22 26 26 C 1.38719 * 119.32157 * 0.02562 * 24 23 22 27 27 N 1.31486 * 120.88325 * 359.97347 * 26 24 23 28 28 C 1.46923 * 118.73992 * 53.86394 * 18 17 16 29 29 H 1.08995 * 109.47216 * 299.99995 * 1 2 3 30 30 H 1.09000 * 109.47191 * 60.00069 * 1 2 3 31 31 H 1.09008 * 109.46901 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99422 * 264.99614 * 4 2 1 33 33 H 0.97000 * 120.00379 * 180.02562 * 8 7 5 34 34 H 1.08991 * 109.46260 * 58.65856 * 15 13 2 35 35 H 1.09001 * 109.44196 * 298.69860 * 15 13 2 36 36 H 1.08992 * 109.49566 * 301.41379 * 16 15 13 37 37 H 1.09000 * 109.49324 * 181.30822 * 16 15 13 38 38 H 1.08999 * 109.58293 * 185.57730 * 17 16 15 39 39 H 1.09002 * 109.69890 * 65.22160 * 17 16 15 40 40 H 1.07993 * 120.46764 * 0.02562 * 22 21 19 41 41 H 1.08004 * 120.75636 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.56285 * 179.97438 * 26 24 23 43 43 H 1.08998 * 109.59128 * 65.92273 * 28 18 17 44 44 H 1.09005 * 109.58946 * 186.35175 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1492 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6123 -0.6616 -3.5091 8 7 2.9262 -1.9384 -3.4498 9 14 2.7901 0.2703 -5.1183 10 1 4.1519 0.8563 -5.2031 11 1 2.5804 -0.6614 -6.2555 12 1 1.7793 1.3566 -5.1755 13 6 2.0401 -0.7213 1.2492 14 1 1.6779 -1.7494 1.2490 15 6 1.5302 -0.0004 2.4992 16 6 2.0126 -0.7401 3.7492 17 6 3.5442 -0.7371 3.7801 18 7 4.0438 -1.2971 2.5170 19 6 4.9188 -2.3223 2.5189 20 8 5.3271 -2.7746 1.4675 21 6 5.3827 -2.8976 3.8025 22 6 5.8935 -4.1937 3.8338 23 6 6.3231 -4.7189 5.0415 24 6 6.2275 -3.9287 6.1782 25 17 6.7451 -4.5411 7.7179 26 6 5.7083 -2.6467 6.0726 27 7 5.3081 -2.1740 4.9128 28 6 3.5763 -0.7144 1.2519 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 3.2502 -2.3955 -4.2417 34 1 0.4405 0.0203 2.4874 35 1 1.9126 1.0202 2.5109 36 1 1.6512 -1.7681 3.7257 37 1 1.6297 -0.2395 4.6385 38 1 3.8940 -1.3462 4.6136 39 1 3.9074 0.2841 3.8960 40 1 5.9537 -4.7805 2.9292 41 1 6.7241 -5.7202 5.0969 42 1 5.6318 -2.0285 6.9549 43 1 3.9399 0.3094 1.1647 44 1 3.9472 -1.3086 0.4167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715320305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:59 Heat of formation + Delta-G solvation = -2.276169 kcal Electronic energy + Delta-G solvation = -26988.379465 eV Core-core repulsion = 23159.391621 eV Total energy + Delta-G solvation = -3828.987845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10060 -40.55838 -39.05949 -37.74074 -36.99503 -34.76447 -33.75807 -33.13008 -32.51163 -31.27011 -29.81074 -26.99859 -26.15799 -24.99299 -24.88192 -24.06869 -22.41983 -21.22717 -20.66307 -19.16192 -18.60768 -18.27409 -17.59711 -17.02087 -16.76076 -16.50197 -16.03445 -15.67929 -15.57050 -15.40131 -15.07827 -15.03053 -14.56271 -14.30731 -14.21640 -14.00246 -13.81915 -13.61178 -13.36405 -13.07311 -13.00341 -12.76712 -12.58258 -12.39960 -12.32669 -12.12809 -11.98401 -11.84971 -11.70025 -11.47766 -11.38793 -11.19229 -11.04675 -10.94579 -10.21596 -10.12737 -9.63336 -8.97812 -7.90734 -5.19150 -0.68931 -0.04620 0.84630 1.45070 1.47611 1.48977 1.55510 1.83384 2.48839 2.57046 2.91657 3.42500 3.46295 3.57874 3.69753 3.74445 3.82564 3.88148 3.99592 4.18600 4.19923 4.36022 4.47584 4.54943 4.61691 4.62500 4.75074 4.77366 4.82131 4.87670 4.92529 5.03693 5.05895 5.09085 5.16219 5.24876 5.32305 5.39627 5.50159 5.56056 5.60038 5.67552 6.26162 6.30376 6.45189 6.98602 7.35557 8.13396 8.35379 9.32899 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.002626 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.099977 B =10658.600447 C =11795.404858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.737 5.737 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.290 1.290 11 H -0.298 1.298 12 H -0.266 1.266 13 C -0.088 4.088 14 H 0.050 0.950 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.072 3.928 18 N -0.585 5.585 19 C 0.551 3.449 20 O -0.577 6.577 21 C 0.073 3.927 22 C -0.106 4.106 23 C -0.059 4.059 24 C -0.067 4.067 25 Cl -0.031 7.031 26 C 0.113 3.887 27 N -0.440 5.440 28 C 0.127 3.873 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.368 0.632 33 H 0.248 0.752 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.180 0.820 42 H 0.206 0.794 43 H 0.067 0.933 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -1.685 29.613 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.064 3.936 3 H 0.066 0.934 4 N -0.377 5.377 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.799 3.201 10 H -0.218 1.218 11 H -0.225 1.225 12 H -0.191 1.191 13 C -0.108 4.108 14 H 0.069 0.931 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.049 4.049 18 N -0.315 5.315 19 C 0.339 3.661 20 O -0.457 6.457 21 C -0.063 4.063 22 C -0.128 4.128 23 C -0.085 4.085 24 C -0.096 4.096 25 Cl -0.002 7.002 26 C -0.047 4.047 27 N -0.152 5.152 28 C 0.005 3.995 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.163 0.837 39 H 0.095 0.905 40 H 0.168 0.832 41 H 0.198 0.802 42 H 0.223 0.777 43 H 0.085 0.915 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.475 -0.949 28.989 29.212 hybrid contribution 0.686 -1.084 -1.661 2.099 sum 4.161 -2.032 27.328 27.718 Atomic orbital electron populations 1.22317 0.97329 1.00597 1.01039 1.20472 0.93058 0.94986 0.85061 0.93441 1.42683 1.78379 1.10142 1.06473 1.19610 1.34376 0.94103 0.88239 0.90462 1.25561 1.03351 0.96834 1.01550 1.69850 1.52846 1.10398 1.29214 0.85183 0.77796 0.77476 0.79608 1.21781 1.22512 1.19100 1.21665 0.93292 0.99634 0.96181 0.93104 1.21637 1.01692 0.99270 0.92120 1.21952 0.94836 1.00848 0.98921 1.23097 0.94409 1.01327 0.86034 1.48169 1.42266 1.32014 1.09043 1.18474 0.79632 0.80063 0.87961 1.90845 1.58920 1.62281 1.33646 1.20948 1.00182 0.93340 0.91857 1.22170 0.95813 0.94624 1.00147 1.21836 0.95637 1.01667 0.89314 1.22419 1.01738 0.96227 0.89232 1.98421 1.88618 1.87115 1.26070 1.23514 0.92538 0.92298 0.96365 1.67677 1.14486 1.34790 0.98267 1.21547 0.94998 0.97841 0.85163 0.90096 0.94636 0.94489 0.80092 0.94355 0.89881 0.90701 0.92807 0.87420 0.83655 0.90465 0.83215 0.80222 0.77698 0.91500 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.14 71.98 0.66 -4.68 16 2 C 0.17 6.82 2.47 44.99 0.11 6.93 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 4 N -0.74 -38.54 4.53 -322.94 -1.46 -40.01 16 5 C -0.23 -13.22 9.93 84.03 0.83 -12.39 16 6 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 7 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 8 N -0.97 -63.05 13.06 21.65 0.28 -62.77 16 9 Si 0.97 48.20 29.55 68.60 2.03 50.23 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C -0.09 -2.94 1.99 -10.57 -0.02 -2.96 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 15 C -0.11 -2.52 4.85 30.62 0.15 -2.37 16 16 C -0.13 -2.43 6.08 30.67 0.19 -2.24 16 17 C 0.07 1.57 5.99 86.37 0.52 2.09 16 18 N -0.59 -18.47 2.97 -821.17 -2.44 -20.91 16 19 C 0.55 19.14 7.61 86.87 0.66 19.80 16 20 O -0.58 -25.78 15.94 -3.78 -0.06 -25.84 16 21 C 0.07 1.83 6.45 41.90 0.27 2.10 16 22 C -0.11 -2.22 9.62 22.61 0.22 -2.00 16 23 C -0.06 -0.80 9.97 22.47 0.22 -0.57 16 24 C -0.07 -0.81 6.35 22.51 0.14 -0.67 16 25 Cl -0.03 -0.30 28.99 -2.72 -0.08 -0.38 16 26 C 0.11 1.43 10.98 84.86 0.93 2.36 16 27 N -0.44 -8.46 6.37 -184.82 -1.18 -9.64 16 28 C 0.13 4.77 5.50 86.51 0.48 5.25 16 29 H 0.08 2.14 6.40 -2.39 -0.02 2.12 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.37 21.42 7.64 -92.71 -0.71 20.71 16 33 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.08 1.71 6.36 -2.39 -0.02 1.69 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.15 2.84 3.99 -55.47 -0.22 2.61 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.15 3.33 7.80 -2.91 -0.02 3.30 16 41 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.05 2.64 6.54 -2.38 -0.02 2.62 16 Total: -1.00 -76.63 369.35 3.03 -73.60 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.11 Total: 29.48 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.83 Total: 6.24 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -4.79 Total: -133.32 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -76.63 3.03 -73.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.324 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds