Wall clock time and date at job start Tue Mar 31 2020 21:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46976 * 2 1 4 4 N 1.46498 * 109.47534 * 240.00176 * 2 1 3 5 5 C 1.36932 * 119.99927 * 84.99327 * 4 2 1 6 6 H 1.08000 * 120.00558 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99762 * 180.02562 * 5 4 2 8 8 N 1.31616 * 119.99876 * 359.72945 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47014 * 60.00683 * 9 7 5 11 11 H 1.48501 * 109.46974 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47503 * 300.00191 * 9 7 5 13 13 C 1.52998 * 109.47350 * 119.99450 * 2 1 3 14 14 H 1.08998 * 109.50084 * 180.02562 * 13 2 1 15 15 C 1.53037 * 109.49787 * 300.07070 * 13 2 1 16 16 C 1.53040 * 109.53695 * 181.28090 * 15 13 2 17 17 C 1.53188 * 109.34170 * 298.68028 * 16 15 13 18 18 N 1.46931 * 108.77178 * 54.62215 * 17 16 15 19 19 C 1.34776 * 120.62927 * 126.41811 * 18 17 16 20 20 O 1.21524 * 120.00196 * 352.11828 * 19 18 17 21 21 C 1.48116 * 119.99815 * 172.12415 * 19 18 17 22 22 C 1.39340 * 119.70655 * 170.50516 * 21 19 18 23 23 C 1.38527 * 119.07660 * 179.97438 * 22 21 19 24 24 C 1.38766 * 118.47802 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 120.33931 * 180.02562 * 24 23 22 26 26 C 1.38720 * 119.32512 * 0.02562 * 24 23 22 27 27 N 1.31496 * 120.87853 * 359.73555 * 26 24 23 28 28 C 1.46920 * 118.73615 * 306.38768 * 18 17 16 29 29 H 1.08998 * 109.47136 * 60.00568 * 1 2 3 30 30 H 1.09000 * 109.46618 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47316 * 300.00127 * 1 2 3 32 32 H 0.96995 * 119.99915 * 265.00056 * 4 2 1 33 33 H 0.97005 * 120.00083 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46137 * 301.33339 * 15 13 2 35 35 H 1.09000 * 109.46491 * 61.29408 * 15 13 2 36 36 H 1.09007 * 109.50052 * 178.71486 * 16 15 13 37 37 H 1.09005 * 109.49981 * 58.65240 * 16 15 13 38 38 H 1.09000 * 109.59102 * 294.83241 * 17 16 15 39 39 H 1.09006 * 109.58882 * 174.40241 * 17 16 15 40 40 H 1.08003 * 120.46183 * 359.95953 * 22 21 19 41 41 H 1.07998 * 120.76304 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.56248 * 180.02562 * 26 24 23 43 43 H 1.09002 * 109.59244 * 293.82110 * 28 18 17 44 44 H 1.09000 * 109.58801 * 173.39688 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1491 -0.0074 -2.3757 6 1 1.8925 1.0405 -2.4242 7 6 2.6114 -0.6619 -3.5092 8 7 2.9292 -1.9377 -3.4489 9 14 2.7890 0.2698 -5.1185 10 1 3.7444 1.3922 -4.9377 11 1 3.2971 -0.6489 -6.1688 12 1 1.4665 0.8064 -5.5284 13 6 2.0400 -0.7211 1.2493 14 1 3.1300 -0.7210 1.2500 15 6 1.5288 -0.0011 2.4992 16 6 2.0647 -0.7028 3.7492 17 6 1.5534 -2.1465 3.7791 18 7 1.9170 -2.8031 2.5159 19 6 2.5935 -3.9688 2.5178 20 8 3.0333 -4.4144 3.5594 21 6 2.8009 -4.7067 1.2504 22 6 3.6638 -5.8004 1.2215 23 6 3.8478 -6.4814 0.0293 24 6 3.1619 -6.0443 -1.0951 25 17 3.3561 -6.8624 -2.6139 26 6 2.3196 -4.9468 -0.9931 27 7 2.1606 -4.3223 0.1532 28 6 1.5285 -2.1651 1.2508 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 3.2519 -2.3952 -4.2410 34 1 1.8715 1.0336 2.4879 35 1 0.4391 -0.0223 2.5104 36 1 1.7189 -0.1760 4.6387 37 1 3.1545 -0.7032 3.7273 38 1 0.4693 -2.1481 3.8929 39 1 2.0112 -2.6792 4.6127 40 1 4.1820 -6.1128 2.1161 41 1 4.5104 -7.3325 -0.0241 42 1 1.7837 -4.6036 -1.8656 43 1 0.4424 -2.1681 1.1583 44 1 1.9697 -2.7099 0.4162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715320306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:06 Heat of formation + Delta-G solvation = 20.815714 kcal Electronic energy + Delta-G solvation = -28032.465316 eV Core-core repulsion = 24204.478810 eV Total energy + Delta-G solvation = -3827.986505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89096 -39.32403 -37.85066 -36.59916 -35.22595 -33.30912 -32.51355 -31.97061 -30.98362 -29.64733 -27.79035 -25.92267 -24.36623 -23.96276 -23.77344 -22.89412 -21.18928 -19.84170 -18.77623 -17.60956 -17.10489 -16.96295 -16.36651 -15.73238 -15.32394 -14.81831 -14.74900 -14.61569 -14.05222 -14.02332 -13.71719 -13.61198 -13.52314 -12.99226 -12.84611 -12.63655 -12.36325 -12.31681 -11.92681 -11.82221 -11.45685 -11.29923 -11.02592 -10.90844 -10.83000 -10.67488 -10.45790 -10.27433 -10.22649 -10.17017 -9.91500 -9.80404 -9.55979 -8.97440 -8.88107 -8.75250 -8.35400 -6.92106 -5.74689 -3.01280 0.50937 1.11560 2.00416 2.72454 3.04970 3.44618 3.49706 3.50061 3.79055 4.15378 4.59794 4.60403 4.70032 4.83274 4.94295 5.03519 5.06192 5.14067 5.34365 5.47532 5.59703 5.64482 5.69082 5.77032 5.77361 5.82844 5.89230 5.96484 6.01461 6.08187 6.17184 6.23092 6.33043 6.35118 6.46687 6.57497 6.63694 6.76220 6.90546 7.06556 7.18062 7.49223 7.68747 7.72846 8.20779 8.45162 9.56761 10.14637 10.50665 11.47971 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.007207 B = 0.006241 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3883.994230 B = 4485.564405 C = 7989.066039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.903 3.097 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.288 1.288 13 C -0.107 4.107 14 H 0.068 0.932 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.109 3.891 18 N -0.586 5.586 19 C 0.573 3.427 20 O -0.546 6.546 21 C 0.078 3.922 22 C -0.107 4.107 23 C -0.075 4.075 24 C -0.067 4.067 25 Cl -0.047 7.047 26 C 0.136 3.864 27 N -0.424 5.424 28 C 0.075 3.925 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.183 0.817 43 H 0.069 0.931 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -6.985 10.803 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.734 3.266 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.215 1.215 13 C -0.127 4.127 14 H 0.087 0.913 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.014 4.014 18 N -0.317 5.317 19 C 0.360 3.640 20 O -0.424 6.424 21 C -0.059 4.059 22 C -0.128 4.128 23 C -0.101 4.101 24 C -0.096 4.096 25 Cl -0.018 7.018 26 C -0.023 4.023 27 N -0.136 5.136 28 C -0.046 4.046 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.200 0.800 43 H 0.087 0.913 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.025 -6.454 11.157 13.047 hybrid contribution 0.742 -0.372 -1.303 1.545 sum -1.283 -6.826 9.854 12.056 Atomic orbital electron populations 1.22554 0.99457 1.00946 0.99862 1.20159 0.91845 0.95185 0.85789 0.93487 1.42474 1.78120 1.10814 1.05227 1.19190 1.36286 0.93803 0.87379 0.91443 1.24646 1.02318 0.96026 0.97721 1.69608 1.51022 1.08573 1.28708 0.86340 0.77659 0.78653 0.83930 1.21540 1.21806 1.21465 1.21828 1.00619 0.94999 0.95232 0.91335 1.21648 1.00856 0.99107 0.93785 1.21900 1.01391 0.95060 0.98684 1.21657 0.99771 0.93308 0.86618 1.48054 1.54034 1.20950 1.08622 1.17843 0.78164 0.81010 0.87033 1.90736 1.50631 1.68800 1.32243 1.21291 0.96273 0.95211 0.93107 1.21980 0.97554 0.94463 0.98847 1.21510 0.97981 0.99866 0.90760 1.22356 1.00843 0.97554 0.88820 1.98395 1.96369 1.77604 1.29462 1.23252 0.93828 0.88742 0.96446 1.67878 1.21825 1.25389 0.98517 1.23243 1.01075 0.93712 0.86565 0.92982 0.93153 0.94336 0.77985 0.93634 0.91838 0.91469 0.91052 0.91679 0.91441 0.89325 0.82938 0.83303 0.80012 0.91283 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.80 37.16 0.33 -2.58 16 2 C 0.18 3.45 2.72 -67.93 -0.18 3.27 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -17.18 5.04 -53.43 -0.27 -17.45 16 5 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 6 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -25.95 13.06 55.49 0.72 -25.22 16 9 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C -0.11 -1.76 2.33 -90.50 -0.21 -1.97 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.12 -1.52 4.78 -26.69 -0.13 -1.64 16 16 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 17 C 0.11 1.39 6.44 -3.71 -0.02 1.37 16 18 N -0.59 -9.02 2.97 -173.78 -0.52 -9.54 16 19 C 0.57 9.45 7.65 -12.21 -0.09 9.36 16 20 O -0.55 -9.68 15.79 5.34 0.08 -9.60 16 21 C 0.08 1.23 6.57 -83.01 -0.55 0.69 16 22 C -0.11 -1.42 9.63 -39.06 -0.38 -1.79 16 23 C -0.07 -0.89 9.97 -39.28 -0.39 -1.28 16 24 C -0.07 -0.92 6.35 -39.21 -0.25 -1.17 16 25 Cl -0.05 -0.61 28.99 -51.86 -1.50 -2.12 16 26 C 0.14 2.16 10.98 -17.52 -0.19 1.97 16 27 N -0.42 -7.00 6.14 -9.77 -0.06 -7.06 16 28 C 0.08 1.24 4.66 -3.71 -0.02 1.22 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.87 6.32 -51.93 -0.33 0.54 16 31 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 32 H 0.39 9.50 6.17 -40.82 -0.25 9.25 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.83 6.50 -51.93 -0.34 0.50 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 40 H 0.15 1.78 7.67 -52.48 -0.40 1.37 16 41 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.18 3.04 8.06 -52.49 -0.42 2.61 16 43 H 0.07 1.13 6.18 -51.93 -0.32 0.81 16 44 H 0.16 2.82 2.62 -83.63 -0.22 2.61 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -29.26 363.36 -9.49 -38.75 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.91 Total: 11.05 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.49 Total: -1.09 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.12 Total: -59.27 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.26 -9.49 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.564 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds