Wall clock time and date at job start Tue Mar 31 2020 21:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46976 * 2 1 4 4 N 1.46498 * 109.47534 * 240.00176 * 2 1 3 5 5 C 1.36932 * 119.99927 * 84.99327 * 4 2 1 6 6 H 1.08000 * 120.00558 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99762 * 180.02562 * 5 4 2 8 8 N 1.31616 * 119.99876 * 359.72945 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47014 * 60.00683 * 9 7 5 11 11 H 1.48501 * 109.46974 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47503 * 300.00191 * 9 7 5 13 13 C 1.52998 * 109.47350 * 119.99450 * 2 1 3 14 14 H 1.08998 * 109.50084 * 180.02562 * 13 2 1 15 15 C 1.53037 * 109.49787 * 300.07070 * 13 2 1 16 16 C 1.53040 * 109.53695 * 181.28090 * 15 13 2 17 17 C 1.53188 * 109.34170 * 298.68028 * 16 15 13 18 18 N 1.46931 * 108.77178 * 54.62215 * 17 16 15 19 19 C 1.34776 * 120.62927 * 126.41811 * 18 17 16 20 20 O 1.21524 * 120.00196 * 352.11828 * 19 18 17 21 21 C 1.48116 * 119.99815 * 172.12415 * 19 18 17 22 22 C 1.39340 * 119.70655 * 170.50516 * 21 19 18 23 23 C 1.38527 * 119.07660 * 179.97438 * 22 21 19 24 24 C 1.38766 * 118.47802 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 120.33931 * 180.02562 * 24 23 22 26 26 C 1.38720 * 119.32512 * 0.02562 * 24 23 22 27 27 N 1.31496 * 120.87853 * 359.73555 * 26 24 23 28 28 C 1.46920 * 118.73615 * 306.38768 * 18 17 16 29 29 H 1.08998 * 109.47136 * 60.00568 * 1 2 3 30 30 H 1.09000 * 109.46618 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47316 * 300.00127 * 1 2 3 32 32 H 0.96995 * 119.99915 * 265.00056 * 4 2 1 33 33 H 0.97005 * 120.00083 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46137 * 301.33339 * 15 13 2 35 35 H 1.09000 * 109.46491 * 61.29408 * 15 13 2 36 36 H 1.09007 * 109.50052 * 178.71486 * 16 15 13 37 37 H 1.09005 * 109.49981 * 58.65240 * 16 15 13 38 38 H 1.09000 * 109.59102 * 294.83241 * 17 16 15 39 39 H 1.09006 * 109.58882 * 174.40241 * 17 16 15 40 40 H 1.08003 * 120.46183 * 359.95953 * 22 21 19 41 41 H 1.07998 * 120.76304 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.56248 * 180.02562 * 26 24 23 43 43 H 1.09002 * 109.59244 * 293.82110 * 28 18 17 44 44 H 1.09000 * 109.58801 * 173.39688 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1491 -0.0074 -2.3757 6 1 1.8925 1.0405 -2.4242 7 6 2.6114 -0.6619 -3.5092 8 7 2.9292 -1.9377 -3.4489 9 14 2.7890 0.2698 -5.1185 10 1 3.7444 1.3922 -4.9377 11 1 3.2971 -0.6489 -6.1688 12 1 1.4665 0.8064 -5.5284 13 6 2.0400 -0.7211 1.2493 14 1 3.1300 -0.7210 1.2500 15 6 1.5288 -0.0011 2.4992 16 6 2.0647 -0.7028 3.7492 17 6 1.5534 -2.1465 3.7791 18 7 1.9170 -2.8031 2.5159 19 6 2.5935 -3.9688 2.5178 20 8 3.0333 -4.4144 3.5594 21 6 2.8009 -4.7067 1.2504 22 6 3.6638 -5.8004 1.2215 23 6 3.8478 -6.4814 0.0293 24 6 3.1619 -6.0443 -1.0951 25 17 3.3561 -6.8624 -2.6139 26 6 2.3196 -4.9468 -0.9931 27 7 2.1606 -4.3223 0.1532 28 6 1.5285 -2.1651 1.2508 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2491 -1.6317 -1.1526 33 1 3.2519 -2.3952 -4.2410 34 1 1.8715 1.0336 2.4879 35 1 0.4391 -0.0223 2.5104 36 1 1.7189 -0.1760 4.6387 37 1 3.1545 -0.7032 3.7273 38 1 0.4693 -2.1481 3.8929 39 1 2.0112 -2.6792 4.6127 40 1 4.1820 -6.1128 2.1161 41 1 4.5104 -7.3325 -0.0241 42 1 1.7837 -4.6036 -1.8656 43 1 0.4424 -2.1681 1.1583 44 1 1.9697 -2.7099 0.4162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715320306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:05 Heat of formation + Delta-G solvation = 4.860789 kcal Electronic energy + Delta-G solvation = -28033.157173 eV Core-core repulsion = 24204.478810 eV Total energy + Delta-G solvation = -3828.678363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07318 -40.50638 -39.18513 -37.68601 -36.75456 -34.63018 -34.02131 -33.18734 -32.19182 -31.24221 -29.30484 -27.10500 -26.07354 -25.17124 -24.95460 -24.28898 -22.41898 -21.12488 -20.10471 -19.19117 -18.50507 -18.26233 -17.52459 -16.94885 -16.66116 -16.44878 -16.04975 -15.79585 -15.46705 -15.37876 -15.13989 -15.00185 -14.61012 -14.28864 -14.15450 -13.92151 -13.80422 -13.47863 -13.22516 -13.08781 -12.85237 -12.77658 -12.63243 -12.38551 -12.24265 -12.09509 -11.84203 -11.79253 -11.72377 -11.43203 -11.35880 -11.16797 -10.98761 -10.83237 -10.12462 -9.95628 -9.56835 -8.87131 -7.81771 -5.07638 -0.63071 0.03380 0.91120 1.50401 1.51384 1.51893 1.57525 1.89276 2.62363 2.62851 2.95180 3.47018 3.51979 3.63885 3.76335 3.80145 3.92895 3.98599 4.02262 4.13678 4.25513 4.35799 4.48883 4.58659 4.64003 4.67075 4.72914 4.79940 4.83613 4.87772 5.00921 5.03715 5.12443 5.16392 5.18213 5.26383 5.33931 5.45184 5.48322 5.62559 5.72202 5.80204 6.25216 6.40095 6.50332 6.98063 7.47595 8.24203 8.50001 9.39946 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.007207 B = 0.006241 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3883.994230 B = 4485.564405 C = 7989.066039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.175 3.825 3 H 0.040 0.960 4 N -0.735 5.735 5 C -0.239 4.239 6 H 0.068 0.932 7 C -0.065 4.065 8 N -0.951 5.951 9 Si 0.959 3.041 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.283 1.283 13 C -0.097 4.097 14 H 0.042 0.958 15 C -0.110 4.110 16 C -0.124 4.124 17 C 0.103 3.897 18 N -0.586 5.586 19 C 0.567 3.433 20 O -0.563 6.563 21 C 0.055 3.945 22 C -0.099 4.099 23 C -0.060 4.060 24 C -0.067 4.067 25 Cl -0.040 7.040 26 C 0.117 3.883 27 N -0.440 5.440 28 C 0.081 3.919 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.378 0.622 33 H 0.248 0.752 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.171 0.829 41 H 0.187 0.813 42 H 0.164 0.836 43 H 0.071 0.929 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -6.806 12.222 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.066 3.934 3 H 0.058 0.942 4 N -0.377 5.377 5 C -0.371 4.371 6 H 0.086 0.914 7 C -0.258 4.258 8 N -0.601 5.601 9 Si 0.789 3.211 10 H -0.213 1.213 11 H -0.224 1.224 12 H -0.210 1.210 13 C -0.117 4.117 14 H 0.061 0.939 15 C -0.148 4.148 16 C -0.162 4.162 17 C -0.018 4.018 18 N -0.315 5.315 19 C 0.355 3.645 20 O -0.443 6.443 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.096 4.096 25 Cl -0.011 7.011 26 C -0.043 4.043 27 N -0.152 5.152 28 C -0.041 4.041 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.212 0.788 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.189 0.811 41 H 0.205 0.795 42 H 0.181 0.819 43 H 0.089 0.911 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.283 -6.235 12.605 14.247 hybrid contribution 0.815 -0.420 -1.715 1.944 sum -1.468 -6.655 10.890 12.847 Atomic orbital electron populations 1.22387 0.97533 1.01003 1.00680 1.20369 0.93067 0.94632 0.85322 0.94201 1.42657 1.78436 1.10663 1.05963 1.19481 1.35194 0.93953 0.88520 0.91429 1.25301 1.03197 0.96926 1.00370 1.69747 1.52054 1.09476 1.28834 0.85446 0.77530 0.77406 0.80687 1.21342 1.22367 1.20985 1.21667 0.98963 0.95330 0.95747 0.93914 1.21625 1.01653 0.99189 0.92343 1.21864 1.00545 0.94468 0.99312 1.21899 1.01039 0.93647 0.85257 1.48119 1.53525 1.20749 1.09150 1.18018 0.78096 0.81313 0.87118 1.90712 1.51533 1.69332 1.32732 1.21425 0.97621 0.96447 0.92724 1.22231 0.96480 0.93368 0.99940 1.21878 0.97246 1.00172 0.89290 1.22391 1.00463 0.96983 0.89742 1.98396 1.96271 1.77237 1.29217 1.23050 0.95157 0.90081 0.95987 1.67781 1.22644 1.25865 0.98873 1.23040 1.00855 0.93465 0.86768 0.94814 0.93457 0.90782 0.78786 0.94275 0.90903 0.89973 0.87675 0.93004 0.89457 0.89484 0.81113 0.79529 0.81891 0.91095 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 8.80 71.98 0.63 -4.58 16 2 C 0.17 6.65 2.72 44.99 0.12 6.77 16 3 H 0.04 1.57 8.08 -2.38 -0.02 1.55 16 4 N -0.74 -35.62 5.04 -322.94 -1.63 -37.25 16 5 C -0.24 -12.90 9.93 84.04 0.83 -12.07 16 6 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 8 N -0.95 -54.33 13.06 21.65 0.28 -54.04 16 9 Si 0.96 45.37 29.55 68.60 2.03 47.39 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C -0.10 -3.14 2.33 -10.72 -0.02 -3.17 16 14 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 15 C -0.11 -2.61 4.78 30.62 0.15 -2.46 16 16 C -0.12 -2.59 6.08 30.67 0.19 -2.41 16 17 C 0.10 2.43 6.44 86.36 0.56 2.98 16 18 N -0.59 -17.66 2.97 -822.00 -2.44 -20.10 16 19 C 0.57 18.60 7.65 86.87 0.66 19.27 16 20 O -0.56 -19.62 15.79 -3.79 -0.06 -19.68 16 21 C 0.05 1.73 6.57 41.90 0.28 2.00 16 22 C -0.10 -2.51 9.63 22.60 0.22 -2.29 16 23 C -0.06 -1.33 9.97 22.47 0.22 -1.11 16 24 C -0.07 -1.82 6.35 22.51 0.14 -1.68 16 25 Cl -0.04 -1.03 28.99 -2.72 -0.08 -1.11 16 26 C 0.12 3.85 10.98 84.86 0.93 4.78 16 27 N -0.44 -14.98 6.14 -184.82 -1.13 -16.11 16 28 C 0.08 2.64 4.66 86.36 0.40 3.05 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.60 6.32 -2.39 -0.02 1.58 16 31 H 0.07 1.93 6.46 -2.39 -0.02 1.91 16 32 H 0.38 19.31 6.17 -92.71 -0.57 18.74 16 33 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.73 6.50 -2.39 -0.02 1.71 16 36 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 2.12 7.00 -2.38 -0.02 2.10 16 40 H 0.17 3.65 7.67 -2.91 -0.02 3.63 16 41 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.16 5.88 8.06 -2.91 -0.02 5.86 16 43 H 0.07 2.28 6.18 -2.39 -0.01 2.26 16 44 H 0.14 5.15 2.62 -64.99 -0.17 4.98 16 Total: -1.00 -63.90 363.36 3.05 -60.85 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.30 Total: 34.07 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.78 Total: 5.99 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -4.92 Total: -127.51 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.06 Total: -19.68 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -63.90 3.05 -60.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.710 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds