Wall clock time and date at job start Tue Mar 31 2020 21:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46892 * 2 1 4 4 N 1.46508 * 109.47514 * 119.99680 * 2 1 3 5 5 C 1.36940 * 119.99800 * 275.00619 * 4 2 1 6 6 H 1.07995 * 120.00048 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99596 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99730 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46965 * 90.00346 * 9 7 5 11 11 H 1.48501 * 109.46740 * 210.00069 * 9 7 5 12 12 H 1.48495 * 109.47117 * 329.99690 * 9 7 5 13 13 C 1.52999 * 109.47478 * 239.99957 * 2 1 3 14 14 H 1.08997 * 109.49903 * 185.05893 * 13 2 1 15 15 C 1.53043 * 109.49572 * 64.99465 * 13 2 1 16 16 C 1.53040 * 109.53578 * 178.68725 * 15 13 2 17 17 C 1.53188 * 109.31367 * 61.36632 * 16 15 13 18 18 N 1.46921 * 108.77611 * 305.36208 * 17 16 15 19 19 C 1.34780 * 120.63373 * 233.63056 * 18 17 16 20 20 O 1.21519 * 119.99942 * 172.28573 * 19 18 17 21 21 C 1.48111 * 119.99743 * 352.28449 * 19 18 17 22 22 C 1.39347 * 119.70284 * 170.51402 * 21 19 18 23 23 C 1.38532 * 119.07034 * 179.74795 * 22 21 19 24 24 C 1.38766 * 118.48084 * 0.52498 * 23 22 21 25 25 Cl 1.73600 * 120.33943 * 179.76582 * 24 23 22 26 26 C 1.38728 * 119.32212 * 359.74280 * 24 23 22 27 27 N 1.31490 * 120.88043 * 359.97438 * 26 24 23 28 28 C 1.46928 * 118.73686 * 53.61229 * 18 17 16 29 29 H 1.09006 * 109.47047 * 299.99838 * 1 2 3 30 30 H 1.08988 * 109.47289 * 60.00331 * 1 2 3 31 31 H 1.09007 * 109.46828 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99486 * 95.00413 * 4 2 1 33 33 H 0.96997 * 119.99683 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46154 * 298.70619 * 15 13 2 35 35 H 1.08995 * 109.45991 * 58.67994 * 15 13 2 36 36 H 1.08999 * 109.49549 * 181.32180 * 16 15 13 37 37 H 1.08999 * 109.49901 * 301.41188 * 16 15 13 38 38 H 1.08994 * 109.58938 * 65.15543 * 17 16 15 39 39 H 1.09002 * 109.58735 * 185.43700 * 17 16 15 40 40 H 1.08001 * 120.46314 * 0.02562 * 22 21 19 41 41 H 1.07997 * 120.75777 * 180.28821 * 23 22 21 42 42 H 1.07999 * 119.55444 * 180.02562 * 26 24 23 43 43 H 1.09005 * 109.58660 * 186.60146 * 28 18 17 44 44 H 1.08998 * 109.59130 * 66.17441 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8925 1.0406 2.4242 7 6 2.6114 -0.6618 3.5093 8 7 2.7375 -0.0050 4.6430 9 14 3.0545 -2.4746 3.4258 10 1 4.4871 -2.6177 3.0620 11 1 2.8145 -3.1042 4.7491 12 1 2.2141 -3.1428 2.4000 13 6 2.0401 -0.7212 -1.2492 14 1 3.1263 -0.8006 -1.2054 15 6 1.6354 0.0686 -2.4960 16 6 2.1733 -0.6347 -3.7443 17 6 1.5612 -2.0357 -3.8398 18 7 1.8220 -2.7523 -2.5840 19 6 2.4133 -3.9635 -2.5944 20 8 2.7508 -4.4838 -1.5494 21 6 2.6516 -4.6601 -3.8795 22 6 3.4352 -5.8121 -3.9055 23 6 3.6453 -6.4562 -5.1138 24 6 3.0727 -5.9192 -6.2582 25 17 3.3098 -6.6836 -7.7987 26 6 2.3086 -4.7657 -6.1585 27 7 2.1214 -4.1785 -4.9969 28 6 1.4264 -2.1233 -1.3164 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2492 -1.6317 1.1526 33 1 3.0602 -0.4624 5.4351 34 1 0.5484 0.1269 -2.5521 35 1 2.0506 1.0748 -2.4391 36 1 1.9048 -0.0592 -4.6302 37 1 3.2582 -0.7154 -3.6774 38 1 0.4858 -1.9548 -3.9978 39 1 2.0131 -2.5760 -4.6717 40 1 3.8690 -6.1998 -2.9956 41 1 4.2441 -7.3535 -5.1646 42 1 1.8609 -4.3448 -7.0466 43 1 1.7911 -2.7222 -0.4818 44 1 0.3400 -2.0493 -1.2685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715320307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:14 Heat of formation + Delta-G solvation = 25.522337 kcal Electronic energy + Delta-G solvation = -27140.127552 eV Core-core repulsion = 23312.345141 eV Total energy + Delta-G solvation = -3827.782411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31030 -39.68881 -37.95822 -37.21139 -35.63164 -33.47965 -32.72694 -31.90961 -31.74262 -30.11045 -28.14449 -26.21780 -24.63191 -24.39857 -23.82409 -22.89790 -21.21824 -20.30330 -18.86951 -17.94493 -17.63307 -17.35845 -16.88710 -15.93419 -15.59212 -15.33565 -14.88762 -14.72259 -14.40609 -14.34576 -14.03446 -13.85512 -13.51890 -13.22111 -13.00751 -12.85418 -12.63209 -12.52787 -12.50009 -12.09046 -11.90976 -11.58028 -11.35272 -11.12641 -10.88476 -10.66580 -10.52907 -10.47544 -10.36920 -10.34115 -10.07226 -9.93046 -9.55314 -9.50831 -9.28292 -8.87256 -8.51703 -7.21138 -5.71136 -3.06194 -0.02099 0.52196 1.37588 2.37160 2.81471 3.30478 3.46720 3.52450 3.55023 3.62897 4.06638 4.16562 4.29877 4.49343 4.66848 4.84223 4.99774 5.01187 5.12748 5.17136 5.23631 5.28250 5.39881 5.50512 5.58388 5.65434 5.68810 5.82483 5.84202 5.86962 6.03872 6.05061 6.15234 6.23206 6.29629 6.33256 6.50832 6.53614 6.68451 6.82733 6.99472 7.08175 7.37054 8.01237 8.05299 8.48076 9.27027 10.00167 10.19624 11.47154 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002846 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.303153 B = 9837.215343 C =11098.052351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.275 1.275 13 C -0.107 4.107 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.073 3.927 18 N -0.585 5.585 19 C 0.562 3.438 20 O -0.526 6.526 21 C 0.092 3.908 22 C -0.098 4.098 23 C -0.068 4.068 24 C -0.074 4.074 25 Cl -0.048 7.048 26 C 0.107 3.893 27 N -0.432 5.432 28 C 0.110 3.890 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.142 0.858 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.174 0.826 43 H 0.093 0.907 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -10.751 -29.160 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.077 0.923 4 N -0.393 5.393 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.710 3.290 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.201 1.201 13 C -0.127 4.127 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.174 4.174 17 C -0.050 4.050 18 N -0.316 5.316 19 C 0.348 3.652 20 O -0.402 6.402 21 C -0.046 4.046 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.103 4.103 25 Cl -0.019 7.019 26 C -0.052 4.052 27 N -0.144 5.144 28 C -0.011 4.011 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.195 0.805 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.158 0.842 40 H 0.178 0.822 41 H 0.172 0.828 42 H 0.191 0.809 43 H 0.111 0.889 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.426 -10.156 -28.444 30.236 hybrid contribution 0.800 -2.045 -0.092 2.198 sum -0.626 -12.202 -28.535 31.041 Atomic orbital electron populations 1.22545 0.99036 1.00877 1.00536 1.20156 0.91988 0.95589 0.84707 0.92346 1.42872 1.79780 1.09470 1.07188 1.19061 1.36778 0.95469 0.85729 0.89212 1.24649 1.01455 0.97416 0.95577 1.69704 1.52842 1.35544 1.00256 0.86613 0.78742 0.86811 0.76802 1.21091 1.21804 1.20051 1.21820 1.01008 0.94091 0.95737 0.90684 1.21616 1.01174 0.98939 0.93524 1.21967 1.00814 0.96036 0.98543 1.22965 1.01418 0.93016 0.87573 1.48022 1.57663 1.16937 1.08957 1.17816 0.78678 0.81743 0.86998 1.90848 1.50964 1.66442 1.31991 1.21478 0.96012 0.94345 0.92725 1.22190 0.96372 0.94006 0.99329 1.21620 0.97526 0.99949 0.90365 1.22352 1.01920 0.97317 0.88695 1.98409 1.95661 1.80611 1.27208 1.23046 0.94626 0.90867 0.96685 1.67847 1.20044 1.28397 0.98134 1.21974 0.99771 0.94100 0.85239 0.92374 0.93918 0.93392 0.80532 0.93149 0.91415 0.91554 0.90958 0.92008 0.91702 0.84206 0.82223 0.82832 0.80910 0.88890 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.76 37.16 0.33 -2.58 16 2 C 0.19 3.51 2.67 -67.93 -0.18 3.33 16 3 H 0.06 1.15 8.08 -51.92 -0.42 0.73 16 4 N -0.75 -18.01 4.86 -53.42 -0.26 -18.27 16 5 C -0.24 -6.87 10.41 -15.06 -0.16 -7.03 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 8 N -0.94 -29.95 13.97 55.49 0.78 -29.17 16 9 Si 0.88 23.27 27.73 -169.99 -4.71 18.55 16 10 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 12 H -0.27 -7.01 6.52 56.52 0.37 -6.64 16 13 C -0.11 -1.68 2.27 -90.50 -0.21 -1.89 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.11 -1.39 4.89 -26.69 -0.13 -1.52 16 16 C -0.14 -1.40 6.08 -26.61 -0.16 -1.56 16 17 C 0.07 0.78 5.88 -3.72 -0.02 0.76 16 18 N -0.58 -8.20 2.97 -173.78 -0.52 -8.71 16 19 C 0.56 8.39 7.65 -12.21 -0.09 8.30 16 20 O -0.53 -9.74 15.79 5.35 0.08 -9.65 16 21 C 0.09 1.04 6.58 -83.01 -0.55 0.49 16 22 C -0.10 -0.91 9.63 -39.06 -0.38 -1.29 16 23 C -0.07 -0.47 9.97 -39.28 -0.39 -0.86 16 24 C -0.07 -0.50 6.35 -39.21 -0.25 -0.75 16 25 Cl -0.05 -0.28 28.99 -51.86 -1.50 -1.78 16 26 C 0.11 0.75 10.98 -17.52 -0.19 0.55 16 27 N -0.43 -4.06 6.12 -9.77 -0.06 -4.12 16 28 C 0.11 1.77 5.19 -3.71 -0.02 1.75 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.60 6.59 -51.94 -0.34 0.25 16 31 H 0.05 0.81 6.23 -51.92 -0.32 0.48 16 32 H 0.36 8.81 4.34 -40.82 -0.18 8.63 16 33 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 34 H 0.07 0.77 6.63 -51.93 -0.34 0.43 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.14 1.39 4.01 -85.00 -0.34 1.05 16 40 H 0.16 1.46 7.67 -52.49 -0.40 1.06 16 41 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.09 1.79 5.82 -51.93 -0.30 1.49 16 44 H 0.08 1.17 6.06 -51.93 -0.31 0.86 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.87 360.76 -9.19 -43.07 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.94 Total: 6.91 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.50 Total: -2.25 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.06 Total: -60.28 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.71 Total: 18.55 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.50 Total: -1.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.87 -9.19 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.589 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds