Wall clock time and date at job start Tue Mar 31 2020 21:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46892 * 2 1 4 4 N 1.46508 * 109.47514 * 119.99680 * 2 1 3 5 5 C 1.36940 * 119.99800 * 275.00619 * 4 2 1 6 6 H 1.07995 * 120.00048 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99596 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99730 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46965 * 90.00346 * 9 7 5 11 11 H 1.48501 * 109.46740 * 210.00069 * 9 7 5 12 12 H 1.48495 * 109.47117 * 329.99690 * 9 7 5 13 13 C 1.52999 * 109.47478 * 239.99957 * 2 1 3 14 14 H 1.08997 * 109.49903 * 185.05893 * 13 2 1 15 15 C 1.53043 * 109.49572 * 64.99465 * 13 2 1 16 16 C 1.53040 * 109.53578 * 178.68725 * 15 13 2 17 17 C 1.53188 * 109.31367 * 61.36632 * 16 15 13 18 18 N 1.46921 * 108.77611 * 305.36208 * 17 16 15 19 19 C 1.34780 * 120.63373 * 233.63056 * 18 17 16 20 20 O 1.21519 * 119.99942 * 172.28573 * 19 18 17 21 21 C 1.48111 * 119.99743 * 352.28449 * 19 18 17 22 22 C 1.39347 * 119.70284 * 170.51402 * 21 19 18 23 23 C 1.38532 * 119.07034 * 179.74795 * 22 21 19 24 24 C 1.38766 * 118.48084 * 0.52498 * 23 22 21 25 25 Cl 1.73600 * 120.33943 * 179.76582 * 24 23 22 26 26 C 1.38728 * 119.32212 * 359.74280 * 24 23 22 27 27 N 1.31490 * 120.88043 * 359.97438 * 26 24 23 28 28 C 1.46928 * 118.73686 * 53.61229 * 18 17 16 29 29 H 1.09006 * 109.47047 * 299.99838 * 1 2 3 30 30 H 1.08988 * 109.47289 * 60.00331 * 1 2 3 31 31 H 1.09007 * 109.46828 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99486 * 95.00413 * 4 2 1 33 33 H 0.96997 * 119.99683 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46154 * 298.70619 * 15 13 2 35 35 H 1.08995 * 109.45991 * 58.67994 * 15 13 2 36 36 H 1.08999 * 109.49549 * 181.32180 * 16 15 13 37 37 H 1.08999 * 109.49901 * 301.41188 * 16 15 13 38 38 H 1.08994 * 109.58938 * 65.15543 * 17 16 15 39 39 H 1.09002 * 109.58735 * 185.43700 * 17 16 15 40 40 H 1.08001 * 120.46314 * 0.02562 * 22 21 19 41 41 H 1.07997 * 120.75777 * 180.28821 * 23 22 21 42 42 H 1.07999 * 119.55444 * 180.02562 * 26 24 23 43 43 H 1.09005 * 109.58660 * 186.60146 * 28 18 17 44 44 H 1.08998 * 109.59130 * 66.17441 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8925 1.0406 2.4242 7 6 2.6114 -0.6618 3.5093 8 7 2.7375 -0.0050 4.6430 9 14 3.0545 -2.4746 3.4258 10 1 4.4871 -2.6177 3.0620 11 1 2.8145 -3.1042 4.7491 12 1 2.2141 -3.1428 2.4000 13 6 2.0401 -0.7212 -1.2492 14 1 3.1263 -0.8006 -1.2054 15 6 1.6354 0.0686 -2.4960 16 6 2.1733 -0.6347 -3.7443 17 6 1.5612 -2.0357 -3.8398 18 7 1.8220 -2.7523 -2.5840 19 6 2.4133 -3.9635 -2.5944 20 8 2.7508 -4.4838 -1.5494 21 6 2.6516 -4.6601 -3.8795 22 6 3.4352 -5.8121 -3.9055 23 6 3.6453 -6.4562 -5.1138 24 6 3.0727 -5.9192 -6.2582 25 17 3.3098 -6.6836 -7.7987 26 6 2.3086 -4.7657 -6.1585 27 7 2.1214 -4.1785 -4.9969 28 6 1.4264 -2.1233 -1.3164 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2492 -1.6317 1.1526 33 1 3.0602 -0.4624 5.4351 34 1 0.5484 0.1269 -2.5521 35 1 2.0506 1.0748 -2.4391 36 1 1.9048 -0.0592 -4.6302 37 1 3.2582 -0.7154 -3.6774 38 1 0.4858 -1.9548 -3.9978 39 1 2.0131 -2.5760 -4.6717 40 1 3.8690 -6.1998 -2.9956 41 1 4.2441 -7.3535 -5.1646 42 1 1.8609 -4.3448 -7.0466 43 1 1.7911 -2.7222 -0.4818 44 1 0.3400 -2.0493 -1.2685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715320307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:13 Heat of formation + Delta-G solvation = 3.986711 kcal Electronic energy + Delta-G solvation = -27141.061407 eV Core-core repulsion = 23312.345141 eV Total energy + Delta-G solvation = -3828.716266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13857 -40.65910 -39.19450 -37.75406 -37.10410 -34.82809 -33.79281 -33.29538 -32.50583 -31.77237 -29.58708 -27.19823 -26.18991 -25.10824 -24.77936 -24.35182 -22.37090 -21.49874 -20.26674 -19.61249 -18.61912 -18.30138 -17.61043 -16.99094 -16.70577 -16.59214 -16.22334 -15.95216 -15.74203 -15.25323 -15.13151 -14.99714 -14.62523 -14.45061 -14.36175 -14.19957 -13.96098 -13.61483 -13.50570 -13.18126 -13.01363 -12.96567 -12.69378 -12.51160 -12.27008 -12.03358 -11.90817 -11.86413 -11.80185 -11.50716 -11.42601 -11.28581 -11.07524 -11.01405 -10.20383 -10.08934 -9.62282 -9.32816 -8.05161 -5.35876 -0.73033 -0.05823 0.83790 1.32731 1.35041 1.41262 1.46556 1.80466 2.43503 2.51957 2.86967 3.26904 3.43641 3.52400 3.56570 3.68947 3.79438 3.85581 3.90847 3.99442 4.19283 4.35163 4.39778 4.53016 4.58348 4.59833 4.66183 4.72087 4.75734 4.82842 4.87948 5.02972 5.07236 5.08924 5.13852 5.20817 5.27782 5.37877 5.46218 5.63602 5.68505 5.77097 6.20519 6.22292 6.42899 6.93874 7.06108 7.84486 8.00968 9.16662 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002846 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.303153 B = 9837.215343 C =11098.052351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 H 0.050 0.950 4 N -0.756 5.756 5 C -0.219 4.219 6 H 0.064 0.936 7 C -0.059 4.059 8 N -0.981 5.981 9 Si 0.942 3.058 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.265 1.265 13 C -0.095 4.095 14 H 0.051 0.949 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.069 3.931 18 N -0.585 5.585 19 C 0.553 3.447 20 O -0.577 6.577 21 C 0.070 3.930 22 C -0.104 4.104 23 C -0.060 4.060 24 C -0.067 4.067 25 Cl -0.032 7.032 26 C 0.113 3.887 27 N -0.437 5.437 28 C 0.115 3.885 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.360 0.640 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.179 0.821 42 H 0.206 0.794 43 H 0.053 0.947 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 -11.733 -33.689 35.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.068 0.932 4 N -0.399 5.399 5 C -0.350 4.350 6 H 0.082 0.918 7 C -0.251 4.251 8 N -0.633 5.633 9 Si 0.770 3.230 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.191 1.191 13 C -0.115 4.115 14 H 0.070 0.930 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.051 4.051 18 N -0.315 5.315 19 C 0.341 3.659 20 O -0.457 6.457 21 C -0.066 4.066 22 C -0.125 4.125 23 C -0.086 4.086 24 C -0.096 4.096 25 Cl -0.003 7.003 26 C -0.047 4.047 27 N -0.149 5.149 28 C -0.008 4.008 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.197 0.803 42 H 0.223 0.777 43 H 0.072 0.928 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.164 -11.119 -33.056 34.943 hybrid contribution 1.007 -1.711 1.118 2.279 sum -1.158 -12.830 -31.938 34.438 Atomic orbital electron populations 1.22390 0.96933 1.01274 1.01290 1.20450 0.93381 0.95073 0.84213 0.93165 1.42987 1.80060 1.09443 1.07452 1.19073 1.34245 0.94523 0.87202 0.91763 1.25312 1.02863 1.01388 0.95501 1.69846 1.55148 1.37233 1.01030 0.85613 0.78368 0.82210 0.76761 1.21125 1.21786 1.19054 1.21646 0.99378 0.94400 0.96037 0.93037 1.21615 1.02284 0.98672 0.92156 1.21959 0.99999 0.95908 0.98817 1.23256 1.02557 0.93009 0.86298 1.48145 1.57160 1.16947 1.09234 1.18416 0.77792 0.81794 0.87904 1.90804 1.53134 1.67664 1.34125 1.20983 0.98371 0.95318 0.91904 1.22187 0.96374 0.93770 1.00207 1.21851 0.97088 1.00274 0.89360 1.22450 1.00953 0.97042 0.89162 1.98426 1.95488 1.80306 1.26119 1.23547 0.93931 0.90633 0.96592 1.67679 1.20130 1.28917 0.98197 1.21749 1.00100 0.93505 0.85428 0.94867 0.89869 0.93145 0.80717 0.93409 0.89757 0.90912 0.87520 0.93150 0.90187 0.82943 0.82980 0.80323 0.77733 0.92803 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 8.76 71.98 0.63 -4.64 16 2 C 0.18 6.69 2.67 44.99 0.12 6.81 16 3 H 0.05 1.99 8.08 -2.38 -0.02 1.97 16 4 N -0.76 -37.13 4.86 -322.92 -1.57 -38.70 16 5 C -0.22 -12.91 10.41 84.03 0.87 -12.04 16 6 H 0.06 4.06 8.06 -2.91 -0.02 4.04 16 7 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 8 N -0.98 -64.92 13.97 21.65 0.30 -64.62 16 9 Si 0.94 49.76 27.73 68.60 1.90 51.66 16 10 H -0.28 -14.93 7.11 99.48 0.71 -14.22 16 11 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 12 H -0.27 -13.43 6.52 99.48 0.65 -12.79 16 13 C -0.09 -2.94 2.27 -10.71 -0.02 -2.96 16 14 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 15 C -0.11 -2.35 4.89 30.62 0.15 -2.20 16 16 C -0.13 -2.25 6.08 30.67 0.19 -2.07 16 17 C 0.07 1.31 5.88 86.36 0.51 1.81 16 18 N -0.59 -16.02 2.97 -822.02 -2.44 -18.46 16 19 C 0.55 16.77 7.65 86.86 0.66 17.43 16 20 O -0.58 -22.45 15.79 -3.78 -0.06 -22.51 16 21 C 0.07 1.53 6.58 41.90 0.28 1.81 16 22 C -0.10 -1.86 9.63 22.61 0.22 -1.65 16 23 C -0.06 -0.68 9.97 22.47 0.22 -0.45 16 24 C -0.07 -0.68 6.35 22.51 0.14 -0.54 16 25 Cl -0.03 -0.27 28.99 -2.72 -0.08 -0.35 16 26 C 0.11 1.17 10.98 84.86 0.93 2.11 16 27 N -0.44 -7.13 6.12 -184.82 -1.13 -8.26 16 28 C 0.11 3.66 5.19 86.36 0.45 4.10 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.08 2.07 6.59 -2.39 -0.02 2.06 16 31 H 0.05 1.64 6.23 -2.38 -0.01 1.62 16 32 H 0.36 17.94 4.34 -92.71 -0.40 17.54 16 33 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 34 H 0.08 1.57 6.63 -2.39 -0.02 1.55 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.15 2.56 4.01 -67.68 -0.27 2.29 16 40 H 0.15 2.88 7.67 -2.91 -0.02 2.86 16 41 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.05 2.15 5.82 -2.38 -0.01 2.14 16 44 H 0.09 2.58 6.06 -2.39 -0.01 2.57 16 Total: -1.00 -77.65 360.76 3.06 -74.59 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.31 Total: 22.29 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.82 Total: 4.35 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -4.84 Total: -130.04 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.90 Total: 51.66 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -77.65 3.06 -74.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715320307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.579 kcal (2) G-P(sol) polarization free energy of solvation -77.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds