Wall clock time and date at job start Tue Mar 31 2020 20:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.49719 * 2 1 4 4 C 1.53046 * 109.52651 * 239.92595 * 2 1 3 5 5 C 1.53044 * 109.53378 * 301.39653 * 4 2 1 6 6 C 1.53631 * 109.24102 * 298.50792 * 5 4 2 7 7 N 1.46932 * 108.54051 * 54.85738 * 6 5 4 8 8 C 1.34774 * 120.62797 * 126.37403 * 7 6 5 9 9 O 1.21523 * 119.99833 * 188.07164 * 8 7 6 10 10 C 1.48111 * 120.00021 * 8.06086 * 8 7 6 11 11 C 1.39344 * 119.70756 * 190.03134 * 10 8 7 12 12 C 1.38523 * 119.07793 * 180.02562 * 11 10 8 13 13 C 1.38767 * 118.47784 * 359.97438 * 12 11 10 14 14 Cl 1.73600 * 120.33945 * 179.97438 * 13 12 11 15 15 C 1.38727 * 119.32496 * 359.97438 * 13 12 11 16 16 N 1.31487 * 120.87583 * 0.02562 * 15 13 12 17 17 C 1.46930 * 118.73904 * 306.09259 * 7 6 5 18 18 H 1.08999 * 109.58891 * 294.07559 * 17 7 6 19 19 C 1.53000 * 109.58377 * 173.64961 * 17 7 6 20 20 N 1.46497 * 109.47282 * 70.13727 * 19 17 7 21 21 C 1.36934 * 120.00191 * 174.65717 * 20 19 17 22 22 H 1.08005 * 119.99855 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00134 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99873 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46860 * 60.00255 * 25 23 21 27 27 H 1.48495 * 109.46897 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47142 * 300.00365 * 25 23 21 29 29 H 1.08995 * 109.46756 * 299.92788 * 1 2 3 30 30 H 1.08994 * 109.47725 * 59.93302 * 1 2 3 31 31 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46125 * 61.40701 * 4 2 1 33 33 H 1.08990 * 109.46024 * 181.37200 * 4 2 1 34 34 H 1.08991 * 109.50141 * 58.58314 * 5 4 2 35 35 H 1.08993 * 109.49616 * 178.68267 * 5 4 2 36 36 H 1.09001 * 109.73738 * 295.12218 * 6 5 4 37 37 H 1.08994 * 109.66794 * 174.55052 * 6 5 4 38 38 H 1.08010 * 120.46269 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.75853 * 180.25793 * 12 11 10 40 40 H 1.07994 * 119.56050 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.46762 * 190.13889 * 19 17 7 42 42 H 1.09005 * 109.47255 * 310.13739 * 19 17 7 43 43 H 0.97000 * 120.00000 * 354.65942 * 20 19 17 44 44 H 0.96996 * 119.99630 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0415 -0.7228 -1.2483 5 6 1.5044 -2.1558 -1.2660 6 6 2.0204 -2.9053 -0.0281 7 7 1.6523 -2.1380 1.1697 8 6 0.9757 -2.7222 2.1783 9 8 0.5493 -2.0478 3.0948 10 6 0.7517 -4.1863 2.1695 11 6 -0.1203 -4.7570 3.0945 12 6 -0.3198 -6.1276 3.0749 13 6 0.3602 -6.8818 2.1292 14 17 0.1467 -8.6033 2.0618 15 6 1.2124 -6.2461 1.2380 16 7 1.3824 -4.9429 1.2799 17 6 2.0414 -0.7234 1.2497 18 1 3.1275 -0.6453 1.2984 19 6 1.4224 -0.0911 2.4979 20 7 2.0772 -0.6281 3.6933 21 6 1.7644 -0.1271 4.9287 22 1 1.0347 0.6637 5.0219 23 6 2.3845 -0.6362 6.0615 24 7 3.2734 -1.6002 5.9481 25 14 1.9572 0.0468 7.7469 26 1 0.5094 -0.1536 8.0097 27 1 2.7505 -0.6612 8.7835 28 1 2.2715 1.4974 7.7873 29 1 -0.3633 0.5127 0.8906 30 1 -0.3634 0.5148 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6993 -0.1958 -2.1389 33 1 3.1311 -0.7435 -1.2349 34 1 0.4147 -2.1361 -1.2543 35 1 1.8499 -2.6627 -2.1669 36 1 3.1048 -3.0014 -0.0816 37 1 1.5655 -3.8947 0.0177 38 1 -0.6335 -4.1392 3.8167 39 1 -0.9927 -6.5980 3.7767 40 1 1.7438 -6.8294 0.5007 41 1 1.5589 0.9897 2.4633 42 1 0.3576 -0.3220 2.5321 43 1 2.7323 -1.3385 3.6097 44 1 3.7069 -1.9557 6.7396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715427981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:30 Heat of formation + Delta-G solvation = 62.062769 kcal Electronic energy + Delta-G solvation = -28333.790993 eV Core-core repulsion = 24507.593094 eV Total energy + Delta-G solvation = -3826.197899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88132 -39.58271 -37.23172 -36.76601 -34.52496 -33.51675 -32.30732 -32.05052 -31.01403 -30.07081 -27.09582 -26.03734 -24.64106 -23.84489 -23.58943 -22.58069 -21.27220 -20.24628 -18.57714 -17.38801 -17.07551 -16.55920 -16.34824 -15.44140 -15.18520 -15.02747 -14.82274 -14.34894 -14.16715 -13.90052 -13.65221 -13.48222 -13.34479 -12.94524 -12.86334 -12.46501 -12.38819 -12.25988 -12.05525 -11.94060 -11.54382 -11.46031 -11.17264 -10.94697 -10.82136 -10.71893 -10.59702 -10.36329 -10.21153 -9.95592 -9.87981 -9.55496 -9.15971 -9.00085 -8.79513 -8.33201 -7.97874 -6.58894 -5.62357 -2.78081 0.53763 1.06197 1.83323 3.03203 3.38973 3.52327 3.55728 3.57062 3.96048 4.20830 4.56727 4.69109 4.70978 4.83383 4.95258 5.02733 5.03612 5.13294 5.28565 5.48718 5.58198 5.70550 5.71979 5.75832 5.78792 5.79693 5.83399 5.97039 6.01517 6.03767 6.10351 6.21634 6.23866 6.31912 6.37673 6.53729 6.57421 6.60148 6.77926 7.00303 7.36883 7.58417 7.81598 8.00881 8.55895 8.84810 9.66526 10.26879 10.60950 11.60812 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008480 B = 0.004975 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.097872 B = 5626.646657 C = 8330.278149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.080 3.920 7 N -0.593 5.593 8 C 0.527 3.473 9 O -0.441 6.441 10 C 0.103 3.897 11 C -0.102 4.102 12 C -0.068 4.068 13 C -0.085 4.085 14 Cl -0.061 7.061 15 C 0.104 3.896 16 N -0.440 5.440 17 C 0.146 3.854 18 H 0.068 0.932 19 C 0.153 3.847 20 N -0.695 5.695 21 C -0.206 4.206 22 H 0.067 0.933 23 C -0.022 4.022 24 N -0.934 5.934 25 Si 0.904 3.096 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.288 1.288 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.015 0.985 42 H 0.053 0.947 43 H 0.380 0.620 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 -9.185 -16.281 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.043 4.043 7 N -0.329 5.329 8 C 0.311 3.689 9 O -0.309 6.309 10 C -0.034 4.034 11 C -0.123 4.123 12 C -0.095 4.095 13 C -0.115 4.115 14 Cl -0.032 7.032 15 C -0.055 4.055 16 N -0.152 5.152 17 C 0.042 3.958 18 H 0.086 0.914 19 C 0.026 3.974 20 N -0.336 5.336 21 C -0.338 4.338 22 H 0.085 0.915 23 C -0.217 4.217 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.215 1.215 27 H -0.219 1.219 28 H -0.215 1.215 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.213 0.787 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.806 -8.377 -16.152 19.099 hybrid contribution -0.322 -0.620 1.494 1.649 sum -6.128 -8.997 -14.658 18.258 Atomic orbital electron populations 1.21842 0.94977 1.01958 1.01274 1.21446 0.96620 0.99247 0.94515 0.90434 1.21549 1.00381 0.95883 0.97304 1.22083 1.01165 0.96000 0.98262 1.22841 1.00470 0.98191 0.82810 1.47530 1.56696 1.10524 1.18127 1.17734 0.82789 0.84971 0.83371 1.91133 1.45301 1.60605 1.33835 1.21789 0.93869 0.95612 0.92174 1.22145 0.97377 0.94343 0.98424 1.21529 0.97937 0.93354 0.96658 1.22203 1.02482 0.86025 1.00794 1.98374 1.96372 1.10559 1.97921 1.22912 0.94866 0.90710 0.97053 1.67829 1.21747 1.04827 1.20822 1.21543 0.98697 0.79806 0.95715 0.91372 1.21102 0.97735 0.93933 0.84592 1.42352 1.46940 1.43097 1.01235 1.19176 1.17116 1.13178 0.84290 0.91510 1.24648 1.00135 0.99379 0.97495 1.69652 1.30790 1.29743 1.28152 0.86294 0.77503 0.78038 0.84596 1.21535 1.21929 1.21528 0.92043 0.93501 0.92510 0.92335 0.92052 0.91725 0.91652 0.92542 0.84446 0.82488 0.83443 0.81628 0.96790 0.92948 0.78702 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.22 37.16 0.31 -1.59 16 2 C -0.10 -1.32 2.79 -90.50 -0.25 -1.58 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.11 -1.28 5.43 -26.69 -0.14 -1.42 16 5 C -0.14 -1.52 5.76 -26.38 -0.15 -1.67 16 6 C 0.08 1.07 5.89 -3.48 -0.02 1.05 16 7 N -0.59 -9.88 2.41 -165.96 -0.40 -10.28 16 8 C 0.53 10.07 7.02 -12.21 -0.09 9.98 16 9 O -0.44 -10.14 10.36 5.35 0.06 -10.08 16 10 C 0.10 1.69 6.57 -83.01 -0.55 1.15 16 11 C -0.10 -1.52 9.63 -39.06 -0.38 -1.90 16 12 C -0.07 -0.82 9.97 -39.28 -0.39 -1.22 16 13 C -0.09 -0.97 6.35 -39.21 -0.25 -1.22 16 14 Cl -0.06 -0.59 28.99 -51.86 -1.50 -2.10 16 15 C 0.10 1.20 10.98 -17.52 -0.19 1.00 16 16 N -0.44 -6.16 6.15 -9.77 -0.06 -6.22 16 17 C 0.15 2.51 2.63 -67.60 -0.18 2.33 16 18 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 19 C 0.15 3.27 4.03 -4.04 -0.02 3.25 16 20 N -0.69 -18.31 3.30 -59.91 -0.20 -18.51 16 21 C -0.21 -5.97 9.78 -15.06 -0.15 -6.12 16 22 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 23 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 24 N -0.93 -29.20 13.06 55.49 0.72 -28.48 16 25 Si 0.90 23.29 29.55 -169.99 -5.02 18.27 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.75 6.34 -51.93 -0.33 0.42 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.14 1.81 4.06 -82.27 -0.33 1.48 16 38 H 0.16 2.45 7.68 -52.48 -0.40 2.05 16 39 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.01 0.31 8.12 -51.93 -0.42 -0.11 16 42 H 0.05 1.18 4.97 -51.93 -0.26 0.93 16 43 H 0.38 10.76 7.13 -40.82 -0.29 10.47 16 44 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -32.61 355.78 -9.62 -42.24 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.04 Total: 8.48 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.54 Total: 1.32 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.07 Total: -63.48 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.06 Total: -10.08 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.61 -9.62 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715427981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.300 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds